Works matching IS 1553734X AND DT 2012 AND VI 8 AND IP 1

Results: 39

SnIPRE: Selection Inference Using a Poisson Random Effects Model.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002806

By:

Eilertson, Kirsten E.;
Booth, James G.;
Bustamante, Carlos D.

Publication type:

Article

Sensitivity Analysis of Flux Determination in Heart by H<sub>2</sub><sup>18</sup>O -provided Labeling Using a Dynamic Isotopologue Model of Energy Transfer Pathways.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002795

By:

Schryer, David W.;
Peterson, Pearu;
Illaste, Ardo;
Vendelin, Marko

Publication type:

Article

Quantitative Dynamics of Telomere Bouquet Formation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002812

By:

Richards, David M.;
Greer, Emma;
Martin, Azahara C.;
Moore, Graham;
Shaw, Peter J.;
Howard, Martin

Publication type:

Article

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002798

By:

Wilczynski, Bartek;
Ya-Hsin Liu;
Zhen Xuan Yeo;
Furlong, Eileen E. M.

Publication type:

Article

Electron Transfer Interactome of Cytochrome c.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002807

By:

Volkov, Alexander N.;
van Nuland, Nico A. J.

Publication type:

Article

A Review of 2011 for PLoS Computational Biology.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002387

By:

Dickin, Rosemary;
Hall, Chris James;
Taylor, Laura K.;
Collings, Andrew M.;
Nussinov, Ruth;
Bourne, Philip E.

Publication type:

Article

Prediction by Promoter Logic in Bacterial Quorum Sensing.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002361

By:

Rai, Navneet;
Anand, Rajat;
Ramkumar, Krishna;
Sreenivasan, Varun;
Dabholkar, Sugat;
Venkatesh, K. V.;
Thattai, Mukund

Publication type:

Article

HIV-1 Polymerase Inhibition by Nucleoside Analogs: Cellular- and Kinetic Parameters of Efficacy, Susceptibility and Resistance Selection.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1

By:

Kleist, Maxvon;
Metzner, Philipp;
Marquet, Roland;
Schütte, Christof

Publication type:

Article

Membrane Properties and the Balance between Excitation and Inhibition Control Gamma-Frequency Oscillations Arising from Feedback Inhibition.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002354

By:

Economo, Michael N.;
White, John A.

Publication type:

Article

Residual Structures, Conformational Fluctuations, and Electrostatic Interactions in the Synergistic Folding of Two Intrinsically Disordered Proteins.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002353

By:

Zhang, Weihong;
Ganguly, Debabani;
Chen, Jianhan

Publication type:

Article

Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1

By:

Achcar, Fiona;
Kerkhoven, Eduard J.;
Consortium, The SilicoTryp;
Bakker, Barbara M.;
Barrett, Michael P.;
Breitling, Rainer

Publication type:

Article

Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002351

By:

Moal, Iain H.;
Bates, Paul A.

Publication type:

Article

Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002350

By:

Yang, Xinan;
Regan, Kelly;
Huang, Yong;
Zhang, Qingbei;
Jianrong Li;
Seiwer, Tanguy Y.;
Cohen, Ezra E. W.;
Xing, H. Rosie;
Lussier, Yves A.

Publication type:

Article

A Theory of Rate Coding Control by Intrinsic Plasticity Effects.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1

By:

Naudé, J.;
Paz, J. T.;
Berry, H.;
Delord, B.

Publication type:

Article

Maximization of Learning Speed in the Motor Cortex Due to Neuronal Redundancy.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002348

By:

Takiyama, Ken;
Okada, Masato

Publication type:

Article

Learning and Generalization under Ambiguity: An fMRI Study.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002346

By:

Chumbley, J. R.;
Flandin, G.;
Bach, D. R.;
Daunizeau, J.;
Fehr, E.;
Dolan, R. J.;
Friston, K. J.

Publication type:

Article

A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002337

By:

Cheng, Yu-Kang;
Beroukhim, Rameen;
Levine, Ross L.;
Mellinghoff, Ingo K.;
Holland, Eric C.;
Michor, Franziska

Publication type:

Article

A Model of Ant Route Navigation Driven by Scene Familiarity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002336

By:

Baddeley, Bart;
Graham, Paul;
Husbands, Philip;
Philippides, Andrew

Publication type:

Article

A Dynamic View of Domain-Motif Interactions.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002341

By:

Akiva, Eyal;
Friedlander, Gilgi;
Itzhaki, Zohar;
Margalit, Hanah

Publication type:

Article

A Viral Dynamic Model for Treatment Regimens with Direct-acting Antivirals for Chronic Hepatitis C Infection.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002339

By:

Adiwijaya, Bambang S.;
Kieffer, Tara L.;
Henshaw, Joshua;
Eisenhauer, Karen;
Kimko, Holly;
Alam, John J.;
Kauffman, Robert S.;
Garg, Varun

Publication type:

Article

Macro-level Modeling of the Response of C. elegans Reproduction to Chronic Heat Stress.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002338

By:

McMullen, Patrick D.;
Aprison, Erin Z.;
Winter, Peter B.;
Amaral, Luis A. N.;
Morimoto, Richard I.;
Ruvinsky, Ilya

Publication type:

Article

Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002345

By:

Thakar, Juilee;
Pathak, Ashutosh K.;
Murphy, Lisa;
Albert, Reacute;ka;
Cattadori, Isabella M.

Publication type:

Article

Adjusting Phenotypes by Noise Control.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002344

By:

Kim, Kyung H.;
Sauro, Herbert M.

Publication type:

Article

Protein Design Using Continuous Rotamers.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002335

By:

Gainza, Pablo;
Roberts, Kyle E.;
Donald, Bruce R.

Publication type:

Article

Balancing Feed-Forward Excitation and Inhibition via Hebbian Inhibitory Synaptic Plasticity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002334

By:

Luz, Yotam;
Shamir, Maoz

Publication type:

Article

Global Analysis of Small Molecule Binding to Related Protein Targets.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002333

By:

Kruger, Felix A.;
Overington, John P.

Publication type:

Article

A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002331

By:

Hsia, Justin;
Holtz, William J.;
Huang, Daniel C.;
Arcak, Murat;
Maharbiz, Michel M.

Publication type:

Article

Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002330

By:

Fusi, Nicoló;
Stegle, Oliver;
Lawrence, Neil D.

Publication type:

Article

A Dynamical Model of Oocyte Maturation Unveils Precisely Orchestrated Meiotic Decisions.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002329

By:

Pfeuty, Benjamin;
Bodart, Jean-Francois;
Blossey, Ralf;
Lefranc, Marc

Publication type:

Article

Landscape Epidemiology and Control of Pathogens with Cryptic and Long-Distance Dispersal: Sudden Oak Death in Northern Californian Forests.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1

By:

Filipe, Joäo A. N.;
Cobb, Richard C.;
Meentemeyer, Ross K.;
Lee, Christopher A.;
Valachovic, Yana S.;
Cook, Alex R.;
Rizzo, David M.;
Gilligan, Christopher A.

Publication type:

Article

Dopamine, Affordance and Active Inference.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002327

By:

Friston, Karl J.;
Shiner, Tamara;
FitzGerald, Thomas;
Galea, Joseph M.;
Adams, Rick;
Brown, Harriet;
Dolan, Raymond J.;
Moran, Rosalyn;
Stephan, Klaas Enno;
Bestmann, Sven

Publication type:

Article

Senescent Cells in Growing Tumors: Population Dynamics and Cancer Stem Cells.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002316

By:

La Porta, Caterina A. M.;
Zapperi, Stefano;
Sethna, James P.

Publication type:

Article

Failure of Adaptive Self-Organized Criticality during Epileptic Seizure Attacks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002312

By:

Meisel, Christian;
Storch, Alexander;
Hallmeyer-Elgner, Susanne;
Bullmore, Ed;
Gross, Thilo

Publication type:

Article

Beyond Statistical Significance: Implications of Network Structure on Neuronal Activity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002311

By:

Vlachos, Ioannis;
Aertsen, Ad;
Kumar, Arvind

Publication type:

Article

Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002308

By:

Mann, Richard P.;
Perna, Andrea;
Strömbom, Daniel;
Garnett, Roman;
Herbert-Read, James E.;
Sumpter, David J. T.;
Ward, Ashley J. W.

Publication type:

Article

Short Conduction Delays Cause Inhibition Rather than Excitation to Favor Synchrony in Hybrid Neuronal Networks of the Entorhinal Cortex.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002306

By:

Wang, Shuoguo;
Chandrasekaran, Lakshmi;
Fernandez, Fernando R.;
White, John A.;
Canavie, Carmen C.

Publication type:

Article

Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarsegrained Simulations.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002299

By:

Koivuniemi, Artturi;
Vuorela, Timo;
Kovanen, Petri T.;
Vattulainen, Ilpo;
Hyvönen, Marja T.

Publication type:

Article

Computational and Statistical Analysis of Protein Mass Spectrometry Data.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002296

By:

Noble, William Stafford;
MacCoss, Michael J.

Publication type:

Article

Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002286

By:

Seifert, Michael;
Gohr, André;
Strickert, Marc;
Grosse, Ivo

Publication type:

Article