Works matching IS 1553734X AND DT 2010 AND VI 6 AND IP 7

Results: 37

The Roots of Bioinformatics in Protein Evolution.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000875

By:

Doolittle, Russell F.

Publication type:

Article

More Than 1,001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000867

By:

Wing-Cheong Wong;
Maurer-Stroh, Sebastian;
Eisenhaber, Frank

Publication type:

Article

Mechanism of MicroRNA-Target Interaction: Molecular Dynamics Simulations and Thermodynamics Analysis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000866

By:

Yonghua Wang;
Yan Li;
Zhi Ma;
Wei Yang;
Chunzhi Ai

Publication type:

Article

A Comprehensive, Quantitative, and Genome-Wide Model of Translation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000865

By:

Siwiak, Marlena;
Zielenkiewicz, Piotr

Publication type:

Article

Knotted vs. Unknotted Proteins: Evidence of Knot- Promoting Loops.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000864

By:

Potestio, Raffaello;
Micheletti, Cristian;
Orland, Henri

Publication type:

Article

Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000863

By:

MacPherson, Jamie I.;
Dickerson, Jonathan E.;
Pinney, John W.;
Robertson, David L.

Publication type:

Article

Defining the Plasticity of Transcription Factor Binding Sites by Deconstructing DNA Consensus Sequences: The PhoP-Binding Sites among Gamma/Enterobacteria.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000862

By:

Harari, Oscar;
Sun-Yang Park;
Henry Huang;
Eduardo A. Groisman;
Zwir, Igor

Publication type:

Article

G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in Saccharomyces cerevisiae.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000861

By:

Capra, John A.;
Paeschke, Katrin;
Singh, Mona;
Zakian, Virginia A.

Publication type:

Article

Coding Efficiency of Fly Motion Processing Is Set by Firing Rate, Not Firing Precision.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000860

By:

Spavieri Jr., Deusdedit Lineu;
Eichner, Hubert;
Borst, Alexander

Publication type:

Article

Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000859

By:

Bordel, Sergio;
Agren, Rasmus;
Nielsen, Jens

Publication type:

Article

Categorial Compositionality: A Category Theory Explanation for the Systematicity of Human Cognition.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000858

By:

Phillips, Steven;
Wilson, William H.

Publication type:

Article

Risk-Sensitive Optimal Feedback Control Accounts for Sensorimotor Behavior under Uncertainty.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000857

By:

Nagengast, Arne J.;
Braun, Daniel A.;
Wolpert, Daniel M.

Publication type:

Article

Do Humans Optimally Exploit Redundancy to Control Step Variability in Walking?

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000856

By:

Dingwell, Jonathan B.;
John, Joby;
Cusumano, Joseph P.

Publication type:

Article

Organization of Cellular Receptors into a Nanoscale Junction during HIV-1 Adhesion.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000855

By:

Dobrowsky, Terrence M.;
Daniels, Brian R.;
Siliciano, Robert F.;
Sun, Sean X.;
Wirtz, Denis

Publication type:

Article

Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000853

By:

Andrey, Philippe;
Kiêu, Kiên;
Kress, Clémence;
Lehmann, Gaätan;
Tirichine, Leïla;
Zichuan Liu;
Biot, Eric;
Adenot, Pierre-Gaäl;
Hue-Beauvais, Cathy;
Houba-Hérin, Nicole;
Duranthon, Véronique;
Devinoy, Eve;
Beaujean, Nathalie;
Gaudin, Valérie;
Maurin, Yves;
Debey, Pascale

Publication type:

Article

Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium Deinococcus radiodurans.

Published in:

2010

By:

Awile, Omar;
Krisko, Anita;
Sbalzarini, Ivo F.;
Zagrovic, Bojan

Publication type:

Case Study

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000852

By:

Altschul, Stephen F.;
Wootton, John C.;
Zaslavsky, Elena;
Yi-Kuo Yu

Publication type:

Article

Large-Scale Analysis of Network Bistability for Human Cancers.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000851

By:

Shiraishi, Tetsuya;
Matsuyama, Shinako;
Kitano, Hiroaki

Publication type:

Article

A Threshold Equation for Action Potential Initiation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000850

By:

Platkiewicz, Jonathan;
Brette, Romain

Publication type:

Article

Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000849

By:

Wagner, James R.;
Bing Ge;
Pokholok, Dmitry;
Gunderson, Kevin L.;
Pastinen, Tomi;
Blanchette, Mathieu

Publication type:

Article

Redundancy and the Evolution of Cis-Regulatory Element Multiplicity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000848

By:

Paixão, Tiago;
Azevedo, Ricardo B. R.

Publication type:

Article

Promoter Complexity and Tissue-Specific Expression of Stress Response Components in Mytilus galloprovincialis, a Sessile Marine Invertebrate Species.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000847

By:

Pantzartzi, Chrysa;
Drosopoulou, Elena;
Yiangou, Minas;
Drozdov, Ignat;
Tsoka, Sophia;
Ouzounis, Christos A.;
Scouras, Zacharias G.

Publication type:

Article

Avalanches in a Stochastic Model of Spiking Neurons.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000846

By:

Benayoun, Marc;
Cowan, Jack D.;
van Drongelen, Wim;
Wallace, Edward

Publication type:

Article

Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000845

By:

Haliloglu, Turkan;
Gul, Ahmet;
Erman, Burak

Publication type:

Article

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000844

By:

Schloss, Patrick D.

Publication type:

Article

Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000843

By:

Guohua Xu, Augix;
Liu He;
Zhongshan Li;
Ying Xu;
Mingfeng Li;
Xing Fu;
Zheng Yan;
Yuan Yuan;
Menzel, Corinna;
Na Li;
Somel, Mehmet;
Hao Hu;
Wei Chen;
Svante Pääbo;
Khaitovich, Philipp

Publication type:

Article

Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000842

By:

Sevim, Volkan;
Gong, Xinwei;
Socolar, Joshua E. S.

Publication type:

Article

Computer Simulation of Cellular Patterning Within the Drosophila Pupal Eye.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000841

By:

Larson, David E.;
Johnson, Ruth I.;
Swat, Maciej;
Cordero, Julia B.;
Glazier, James A.;
Cagan, Ross L.

Publication type:

Article

Action Potential Energy Efficiency Varies Among Neuron Types in Vertebrates and Invertebrates.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000840

By:

Sengupta, Biswa;
Stemmler, Martin;
Laughlin, Simon B.;
Niven, Jeremy E.

Publication type:

Article

Dual Coding with STDP in a Spiking Recurrent Neural Network Model of the Hippocampus.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000839

By:

Bush, Daniel;
Philippides, Andrew;
Phil Husbands;
Michael O'Shea

Publication type:

Article

Conductance Ratios and Cellular Identity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000838

By:

Hudson, Amber E.;
Prinz, Astrid A.

Publication type:

Article

A Comprehensive Benchmark of Kernel Methods to Extract Protein-Protein Interactions from Literature.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000837

By:

Tikk, Domonkos;
Thomas, Philippe;
Palaga, Peter;
Jörg Hakenberg;
Ulf Leser

Publication type:

Article

Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of Escherichia coli.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000836

By:

Marr, Carsten;
Theis, Fabian J.;
Liebovitch, Larry S.;
Hütt, Marc-Thorsten

Publication type:

Article

The Energy Landscape, Folding Pathways and the Kinetics of a Knotted Protein.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000835

By:

Prentiss, Michael C.;
Wales, David J.;
Wolynes, Peter G.

Publication type:

Article

Learning a Weighted Sequence Model of the Nucleosome Core and Linker Yields More Accurate Predictions in Saccharomyces cerevisiae and Homo sapiens.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000834

By:

Reynolds, Sheila M.;
Bilmes, Jeff A.;
Noble, William Stafford

Publication type:

Article

Effects of Macromolecular Crowding on Protein Conformational Changes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000833

By:

Hao Dong;
Sanbo Qin;
Huan-Xiang Zhou

Publication type:

Article

RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000832

By:

Kazan, Hilal;
Ray, Debashish;
Chan, Esther T.;
Hughes, Timothy R.;
Morris, Quaid

Publication type:

Article