Works matching IS 1553734X AND DT 2010 AND VI 6 AND IP 4

Results: 44

A Quantitative Model of Transcriptional Regulation Reveals the Influence of Binding Location on Expression.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000773

By:

MacIsaac, Kenzie D.;
Lo, Kinyui A.;
Gordon, William;
Motola, Shmulik;
Mazor, Tali;
Fraenkel, Ernest

Publication type:

Article

Polyglutamine Induced Misfolding of Huntingtin Exon1 is Modulated by the Flanking Sequences.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000772

By:

Lakhani, Vinal V.;
Feng Ding;
Dokholyan, Nikolay V.

Publication type:

Article

A New Approach for Determining Phase Response Curves Reveals that Purkinje Cells Can Act as Perfect Integrators.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000768

By:

Phoka, Elena;
Cuntz, Hermann;
Roth, Arnd;
Häusser, Michael

Publication type:

Article

Accurately Measuring Recombination between Closely Related HIV-1 Genomes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000766

By:

Schlub, Timothy E.;
Smyth, Redmond P.;
Grimm, Andrew J.;
Mak, Johnson;
Davenport, Miles P.

Publication type:

Article

The Brain's Router: A Cortical Network Model of Serial Processing in the Primate Brain.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000765

By:

Zylberberg, Ariel;
Fernández Slezak, Diego;
Roelfsema, Pieter R.;
Dehaene, Stanislas;
Sigman, Mariano

Publication type:

Article

A Critical Quantity for Noise Attenuation in Feedback Systems.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000764

By:

Liming Wang;
Jack Xin;
Qing Nie

Publication type:

Article

Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000763

By:

Ting, Daniel;
Guoli Wang;
Shapovalov, Maxim;
Mitra, Rajib;
Jordan, Michael I.;
Dunbrack Jr., Roland L.

Publication type:

Article

Asymmetric Switching in a Homodimeric ABC Transporter: A Simulation Study.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000762

By:

Aittoniemi, Jussi;
de Wet, Heidi;
Ashcroft, Frances M.;
Sansom, Mark S. P.

Publication type:

Article

Learning "graph-mer" Motifs that Predict Gene Expression Trajectories in Development.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000761

By:

Xuejing Li;
Panea, Casandra;
Wiggins, Chris H.;
Reinke, Valerie;
Leslie, Christina

Publication type:

Article

Robustness under Functional Constraint: The Genetic Network for Temporal Expression in Drosophila Neurogenesis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000760

By:

Nakajima, Akihiko;
Isshiki, Takako;
Kaneko, Kunihiko;
Ishihara, Shuji

Publication type:

Article

How Informative Are Spatial CA3 Representations Established by the Dentate Gyrus?

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000759

By:

Cerasti, Erika;
Treves, Alessandro

Publication type:

Article

Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000758

By:

Helbing, Dirk;
Szolnoki, Attila;
Perc, Matjaž;
Szabó, György

Publication type:

Article

Independent Component Analysis in Spiking Neurons.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000757

By:

Savin, Cristina;
Joshi, Prashant;
Triesch, Jochen

Publication type:

Article

Simulating Microdosimetry in a Virtual Hepatic Lobule.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000756

By:

Wambaugh, John;
Shah, Imran

Publication type:

Article

Vertical Binocular Disparity is Encoded Implicitly within a Model Neuronal Population Tuned to Horizontal Disparity and Orientation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000754

By:

Read, Jenny C. A.

Publication type:

Article

Ion Channel Density Regulates Switches between Regular and Fast Spiking in Soma but Not in Axons.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000753

By:

Zeberg, Hugo;
Blomberg, Clas;
Århem, Peter

Publication type:

Article

Accurate Distinction of Pathogenic from Benign CNVs in Mental Retardation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000752

By:

Hehir-Kwa, Jayne Y.;
Wieskamp, Nienke;
Webber, Caleb;
Pfundt, Rolph;
Brunner, Han G.;
Gilissen, Christian;
de Vries, Bert B. A.;
Ponting, Chris P.;
Veltman, Joris A.

Publication type:

Article

Coordinate Dependence of Variability Analysis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000751

By:

Sternad, Dagmar;
Se-Woong Park;
Müller, Hermann;
Hogan, Neville

Publication type:

Article

Structural Characteristics of Novel Protein Folds.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000750

By:

Fernandez-Fuentes, Narcis;
Dybas, Joseph M.;
Fiser, Andras

Publication type:

Article

A Reaction-Diffusion Model of Human Brain Development.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000749

By:

Lefèvre, Julien;
Mangin, Jean-François

Publication type:

Article

Efficient Physical Embedding of Topologically Complex Information Processing Networks in Brains and Computer Circuits.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000748

By:

Bassett, Danielle S.;
Greenfield, Daniel L.;
Meyer-Lindenberg, Andreas;
Weinberger, Daniel R.;
Moore, Simon W.;
Bullmore, Edward T.

Publication type:

Article

Charge as a Selection Criterion for Translocation through the Nuclear Pore Complex.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000747

By:

Colwell, Lucy J.;
Brenner, Michael P.;
Ribbeck, Katharina

Publication type:

Article

PLoS Computational Biology Conference Postcards from PSB 2010.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000746

By:

Datta, Ruchira S.;
Lux, Matthew W.;
Bourne, Philip E.

Publication type:

Article

A Multi-Variant, Viral Dynamic Model of Genotype 1 HCV to Assess the in vivo Evolution of Protease-Inhibitor Resistant Variants.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000745

By:

Adiwijaya, Bambang S.;
Herrmann, Eva;
Hare, Brian;
Kieffer, Tara;
Chao Lin;
Kwong, Ann D.;
Garg, Varun;
Randle, John C. R.;
Sarrazin, Christoph;
Zeuzem, Stefan;
Caron, Paul R.

Publication type:

Article

OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000744

By:

Ranganathan, Sridhar;
Suthers, Patrick F.;
Maranas, Costas D.

Publication type:

Article

Prediction of Co-Receptor Usage of HIV-1 from Genotype.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000743

By:

Dybowski, J. Nikolaj;
Heider, Dominik;
Hoffmann, Daniel

Publication type:

Article

Simultaneous Clustering of Multiple Gene Expression and Physical Interaction Datasets.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000742

By:

Narayanan, Manikandan;
Vetta, Adrian;
Schadt, Eric E.;
Jun Zhu

Publication type:

Article

Flow-Based Cytometric Analysis of Cell Cycle via Simulated Cell Populations.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000741

By:

Brown, M. Rowan;
Summers, Huw D.;
Rees, Paul;
Smith, Paul J.;
Chappell, Sally C.;
Errington, Rachel J.

Publication type:

Article

Predicting Odor Pleasantness with an Electronic Nose.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000740

By:

Haddad, Rafi;
Abebe Medhanie;
Yehudah Roth;
David Harel;
Noam Sobel

Publication type:

Article

Global Entrainment of Transcriptional Systems to Periodic Inputs.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000739

By:

Russo, Giovanni;
di Bernardo, Mario;
Sontag, Eduardo D.

Publication type:

Article

On the Conservation of the Slow Conformational Dynamics within the Amino Acid Kinase Family: NAGK the Paradigm.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000738

By:

Marcos, Enrique;
Crehuet, Ramon;
Bahar, Ivet

Publication type:

Article

New Insights into the Genetic Control of Gene Expression using a Bayesian Multi-tissue Approach.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000737

By:

Petretto, Enrico;
Bottolo, Leonardo;
Langley, Sarah R.;
Heinig, Matthias;
McDermott-Roe, Chris;
Sarwar, Rizwan;
Pravenec, Michal;
Hübner, Norbert;
Aitman, Timothy J.;
Cook, Stuart A.;
Richardson, Sylvia

Publication type:

Article

Dynamics and Control of Diseases in Networks with Community Structure.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000736

By:

Salathé, Marcel;
Jones, James H.

Publication type:

Article

Quantitative Modeling of Escherichia coli Chemotactic Motion in Environments Varying in Space and Time.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000735

By:

Lili Jiang;
Qi Ouyang;
Yuhai Tu

Publication type:

Article

Genome-Wide Modeling of Transcription Preinitiation Complex Disassembly Mechanisms using ChIP-chip Data.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000733

By:

Samorodnitsky, Eric;
Pugh, B. Franklin

Publication type:

Article

Why Genes Evolve Faster on Secondary Chromosomes in Bacteria.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000732

By:

Cooper, Vaughn S.;
Vohr, Samuel H.;
Wrocklage, Sarah C.;
Hatcher, Philip J.

Publication type:

Article

A Stevedore's Protein Knot.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000731

By:

Bölinger, Daniel;
Sulkowska, Joanna I.;
Hsiao-Ping Hsu;
Mirny, Leonid A.;
Kardar, Mehran;
Onuchic, José N.;
Virnau, Peter

Publication type:

Article

Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000730

By:

Younghee Lee;
Xinan Yang;
Yong Huang;
Hanli Fan;
Qingbei Zhang;
Youngfei Wu;
Jianrong Li;
Rifat Hasina;
Chao Cheng;
Lingen, Mark W.;
Gerstein, Mark B.;
Weichselbaum, Ralph R.;
Xing, H. Rosie;
Lussier, Yves A.

Publication type:

Article

Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000729

By:

Zelezniak, Aleksej;
Pers, Tune H.;
Soares, Simão;
Patti, Mary Elizabeth;
Patil, Kiran Raosaheb

Publication type:

Article

Somitogenesis Clock-Wave Initiation Requires Differential Decay and Multiple Binding Sites for Clock Protein.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000728

By:

Campanelli, Mark;
Gedeon, Tomáš

Publication type:

Article

Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000727

By:

Kundrotas, Petras J.;
Vakser, Ilya A.

Publication type:

Article

The Origins of Time-Delay in Template Biopolymerization Processes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000726

By:

Mier-y-Terán-Romero, Luis;
Silber, Mary;
Hatzimanikatis, Vassily

Publication type:

Article

Quantifying Aggregated Uncertainty in Plasmodium falciparum Malaria Prevalence and Populations at Risk via Efficient Space-Time Geostatistical Joint Simulation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000724

By:

Gething, Peter W.;
Patil, Anand P.;
Hay, Simon I.

Publication type:

Article

Signatures of Arithmetic Simplicity in Metabolic Network Architecture.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000725

By:

Riehl, William J.;
Krapivsky, Paul L.;
Redner, Sidney;
Segre, Daniel

Publication type:

Article