Works matching IS 1553734X AND DT 2010 AND VI 6 AND IP 2

Results: 33

Interpreting Metabolomic Profiles using Unbiased Pathway Models.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000692

By:

Deo, Rahul C.;
Hunter, Luke;
Lewis, Gregory D.;
Pare, Guillaume;
Vasan, Ramachandran S.;
Chasman, Daniel;
Wang, Thomas J.;
Gerszten, Robert E.;
Roth, Frederick P.

Publication type:

Article

Temporal Sensitivity of Protein Kinase A Activation in Late-Phase Long Term Potentiation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000691

By:

MyungSook Kim;
Huang, Ted;
Abel, Ted;
Blackwell, Kim T.

Publication type:

Article

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000690

By:

Freilich, Shiri;
Kreimer, Anat;
Borenstein, Elhanan;
Gophna, Uri;
Sharan, Roded;
Ruppin, Eytan

Publication type:

Article

Unfolding Simulations Reveal the Mechanism of Extreme Unfolding Cooperativity in the Kinetically Stable α-Lytic Protease.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000689

By:

Salimi, Neema L.;
Ho, Bosco;
Agard, David A.

Publication type:

Article

Stochastic Model of Integrin-Mediated Signaling and Adhesion Dynamics at the Leading Edges of Migrating Cells.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000688

By:

Cirit, Murat;
Krajcovic, Matej;
Choi, Colin K.;
Welf, Erik S.;
Horwitz, Alan F.;
Haugh, Jason M.

Publication type:

Article

A Review of 2009 for PLoS Computational Biology.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000687

By:

Dickin, Rosemary;
Marden, Cecy;
Nancarrow, Catherine;
Bourne, Philip E.

Publication type:

Article

Spatial Simulations of Myxobacterial Development.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000686

By:

Holmes, Antony B.;
Kalvala, Sara;
Whitworth, David E.

Publication type:

Article

Computational Complementation: A Modelling Approach to Study Signalling Mechanisms during Legume Autoregulation of Nodulation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000685

By:

Liqi Han;
Hanan, Jim;
Gresshoff, Peter M.

Publication type:

Article

Amplification of Asynchronous Inhibition-Mediated Synchronization by Feedback in Recurrent Networks.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000679

By:

Marella, Sashi;
Ermentrout, Bard

Publication type:

Article

A Bayesian Approach to Quantifying the Effects of Mass Poultry Vaccination upon the Spatial and Temporal Dynamics of H5N1 in Northern Vietnam.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000683

By:

Walker, Patrick G. T.;
Cauchemez, Simon;
Métras, Raphaëlle;
Do Huu Dung;
Pfeiffer, Dirk;
Ghani, Azra C.

Publication type:

Article

Numerical Modelling Of The V-J Combinations Of The T Cell Receptor TRA/TRD Locus.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000682

By:

Thuderoz, Florence;
Simonet, Maria-Ana;
Hansen, Olivier;
Pasqual, Nicolas;
Dariz, Aurélie;
Baum, Thierry Pascal;
Hierle, Vivien;
Demongeot, Jacques;
Marche, Patrice Noël;
Jouvin-Marche, Evelyne

Publication type:

Article

Identifying the Rules of Engagement Enabling Leukocyte Rolling, Activation, and Adhesion.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000681

By:

Tang, Jonathan;
Hunt, C. Anthony

Publication type:

Article

Self versus Environment Motion in Postural Control.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000680

By:

Dokka, Kalpana;
Kenyon, Robert V.;
Keshner, Emily A.;
Kording, Konrad P.

Publication type:

Article

Molecular Predictors of 3D Morphogenesis by Breast Cancer Cell Lines in 3D Culture.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000684

By:

Ju Han;
Hang Chang;
Giricz, Orsi;
Lee, Genee Y.;
Baehner, Frederick L.;
Gray, Joe W.;
Bissell, Mina J.;
Kenny, Paraic A.;
Parvin, Bahram

Publication type:

Article

Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000678

By:

Junier, Ivan;
Martin, Olivier;
Képès, François

Publication type:

Article

Design of a Trichromatic Cone Array.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000677

By:

Garrigan, Patrick;
Ratliff, Charles P.;
Klein, Jennifer M.;
Sterling, Peter;
Brainard, David H.;
Balasubramanian, Vijay

Publication type:

Article

Adaptable Functionality of Transcriptional Feedback in Bacterial Two-Component Systems.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000676

By:

Ray, J. Christian J.;
Igoshin, Oleg A.

Publication type:

Article

A Dynamic Model of Interactions of Ca2+, Calmodulin, and Catalytic Subunits of Ca2+/Calmodulin-Dependent Protein Kinase II.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000675

By:

Pepke, Shirley;
Kinzer-Ursem, Tamara;
Mihalas, Stefan;
Kennedy, Mary B.

Publication type:

Article

Minimization of Biosynthetic Costs in Adaptive Gene Expression Responses of Yeast to Environmental Changes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000674

By:

Vilaprinyo, Ester;
Alves, Rui;
Sorribas, Albert

Publication type:

Article

Will Widgets and Semantic Tagging Change Computational Biology?

Published in:

2010

By:

Bourne, Philip E.;
Beran, Bojan;
Chunxiao Bi;
Bluhm, Wolfgang;
Dunbrack, Roland;
Prlić, Andreas;
Quinn, Greg;
Rose, Peter;
Shah, Raship;
Tao, Wendy;
Weitzner, Brian;
Yukich, Ben

Publication type:

Opinion

Conditions for the Evolution of Gene Clusters in Bacterial Genomes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000672

By:

Ballouz, Sara;
Francis, Andrew R.;
Ruiting Lan;
Tanaka, Mark M.

Publication type:

Article

Characterizing Dynamic Changes in the Human Blood Transcriptional Network.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000671

By:

Jun Zhu;
Yanqing Chen;
Leonardson, Amy S.;
Kai Wang;
Lamb, John R.;
Emilsson, Valur;
Schadt, Eric E.

Publication type:

Article

A Kinetic Model of Dopamine- and Calcium-Dependent Striatal Synaptic Plasticity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000670

By:

Nakano, Takashi;
Doi, Tomokazu;
Yoshimoto, Junichiro;
Doya, Kenji

Publication type:

Article

A Variant of TNFR2-Fc Fusion Protein Exhibits Improved Efficacy in Treating Experimental Rheumatoid Arthritis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000669

By:

Tong Yang;
Zheng Wang;
Fang Wu;
Jingwei Tan;
Yijun Shen;
Erguang Li;
Jingzhi Dai;
Ronghai Shen;
Gang Li;
Jinsong Wu;
Luochun Wang;
Haibo Wang;
Yanjun Liu

Publication type:

Article

The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000668

By:

Davis, Fred P.;
Sali, Andrej

Publication type:

Article

A Primer on Metagenomics.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000667

By:

Wooley, John C.;
Godzik, Adam;
Friedberg, Iddo

Publication type:

Article

Explicit Kinetic Heterogeneity: Mathematical Models for Interpretation of Deuterium Labeling of Heterogeneous Cell Populations.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000666

By:

Ganusov, Vitaly V.;
Borghans, José A. M.;
De Boer, Rob J.

Publication type:

Article

Predicted Functions of MdmX in Fine-Tuning the Response of p53 to DNA Damage.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000665

By:

Sohyoung Kim;
Aladjem, Mirit I.;
McFadden, Geoffrey B.;
Kohn, Kurt W.

Publication type:

Article

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000664

By:

Wanjun Gu;
Tong Zhou;
Wilke, Claus O.

Publication type:

Article

In Silico Analysis of the Apolipoprotein E and the Amyloid β Peptide Interaction: Misfolding Induced by Frustration of the Salt Bridge Network.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000663

By:

Jinghui Luo;
Maréchal, Jean-Didier;
Wärmländer, Sebastian;
Gräslund, Astrid;
Perálvarez-Marín, Alex

Publication type:

Article

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000662

By:

Suthram, Silpa;
Dudley, Joel T.;
Chiang, Annie P.;
Rong Chen;
Hastie, Trevor J.;
Butte, Atul J.

Publication type:

Article

How to Understand the Cell by Breaking It: Network Analysis of Gene Perturbation Screens.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000655

By:

Markowetz, Florian

Publication type:

Article

Ten Simple Rules for Organizing a Virtual Conference--Anywhere.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000650

By:

Gichora, Nelson N.;
Fatumo, Segun A.;
Ngara, Mtakai V.;
Chelbat, Noura;
Ramdayal, Kavisha;
Opap, Kenneth B.;
Siwo, Geoffrey H.;
Adebiyi, Marion O.;
El Gonnouni, Amina;
Zofou, Denis;
Maurady, Amal A. M.;
Adebiyi, Ezekiel F.;
de Villiers, Etienne P.;
Masiga, Daniel K.;
Bizzaro, Jeffrey W.;
Suravajhala, Prashanth;
Ommeh, Sheila C.;
Hide, Winston

Publication type:

Article

Works matching IS 1553734X AND DT 2010 AND VI 6 AND IP 2

Interpreting Metabolomic Profiles using Unbiased Pathway Models.

Temporal Sensitivity of Protein Kinase A Activation in Late-Phase Long Term Potentiation.

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species.

Unfolding Simulations Reveal the Mechanism of Extreme Unfolding Cooperativity in the Kinetically Stable α-Lytic Protease.

Stochastic Model of Integrin-Mediated Signaling and Adhesion Dynamics at the Leading Edges of Migrating Cells.

A Review of 2009 for PLoS Computational Biology.

Spatial Simulations of Myxobacterial Development.

Computational Complementation: A Modelling Approach to Study Signalling Mechanisms during Legume Autoregulation of Nodulation.

Amplification of Asynchronous Inhibition-Mediated Synchronization by Feedback in Recurrent Networks.

A Bayesian Approach to Quantifying the Effects of Mass Poultry Vaccination upon the Spatial and Temporal Dynamics of H5N1 in Northern Vietnam.

Numerical Modelling Of The V-J Combinations Of The T Cell Receptor TRA/TRD Locus.

Identifying the Rules of Engagement Enabling Leukocyte Rolling, Activation, and Adhesion.

Self versus Environment Motion in Postural Control.

Molecular Predictors of 3D Morphogenesis by Breast Cancer Cell Lines in 3D Culture.

Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization.

Design of a Trichromatic Cone Array.

Adaptable Functionality of Transcriptional Feedback in Bacterial Two-Component Systems.

A Dynamic Model of Interactions of Ca<sup>2+</sup>, Calmodulin, and Catalytic Subunits of Ca<sup>2+</sup>/Calmodulin-Dependent Protein Kinase II.

Minimization of Biosynthetic Costs in Adaptive Gene Expression Responses of Yeast to Environmental Changes.

Will Widgets and Semantic Tagging Change Computational Biology?

Conditions for the Evolution of Gene Clusters in Bacterial Genomes.

Characterizing Dynamic Changes in the Human Blood Transcriptional Network.

A Kinetic Model of Dopamine- and Calcium-Dependent Striatal Synaptic Plasticity.

A Variant of TNFR2-Fc Fusion Protein Exhibits Improved Efficacy in Treating Experimental Rheumatoid Arthritis.

The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures.

A Primer on Metagenomics.

Explicit Kinetic Heterogeneity: Mathematical Models for Interpretation of Deuterium Labeling of Heterogeneous Cell Populations.

Predicted Functions of MdmX in Fine-Tuning the Response of p<sup>53</sup> to DNA Damage.

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes.

In Silico Analysis of the Apolipoprotein E and the Amyloid β Peptide Interaction: Misfolding Induced by Frustration of the Salt Bridge Network.

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets.

How to Understand the Cell by Breaking It: Network Analysis of Gene Perturbation Screens.

Ten Simple Rules for Organizing a Virtual Conference--Anywhere.