Works matching IS 1553734X AND DT 2009 AND VI 5 AND IP 3

Results: 39

On the Growth of Scientific Knowledge: Yeast Biology as a Case Study.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000320

By:

Xionglei He;
Jianzhi Zhang

Publication type:

Article

Robustness in Glyoxylate Bypass Regulation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000297

By:

Shinar, Guy;
Rabinowitz, Joshua D.;
Alon, Uri

Publication type:

Article

Accurate Prediction of Peptide Binding Sites on Protein Surfaces.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000335

By:

Petsalaki, Evangelia;
Stark, Alexander;
García-Urdiales, Eduardo;
Russell, Robert B.

Publication type:

Article

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000334

By:

Bohland, Jason W.;
Caizhi Wu;
Barbas, Helen;
Bokil, Hemant;
Bota, Mihail;
Breiter, Hans C.;
Cline, Hollis T.;
Doyle, John C.;
Freed, Peter J.;
Greenspan, Ralph J.;
Haber, Suzanne N.;
Hawrylycz, Michael;
Herrera, Daniel G.;
Hilgetag, Claus C.;
Huang, Z. Josh;
Jones, Allan;
Jones, Edward G.;
Karten, Harvey J.;
Kleinfeld, David;
Kötter, Rolf

Publication type:

Article

BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000333

By:

Bryan Jr., Allen W.;
Menke, Matthew;
Cowen, Lenore J.;
Lindquist, Susan L.;
Berger, Bonnie

Publication type:

Article

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000331

By:

Pascual-García, Alberto;
Abia, David;
Ortiz, Ángel R.;
Bastolla, Ugo

Publication type:

Article

Positional Information Generated by Spatially Distributed Signaling Cascades.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000330

By:

Muñoz-García, Javier;
Neufeld, Zoltan;
Kholodenko, Boris N.

Publication type:

Article

''I Look in Your Eyes, Honey'': Internal Face Features Induce Spatial Frequency Preference for Human Face Processing.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000329

By:

Keil, Matthias S.

Publication type:

Article

Estimation of Thalamocortical and Intracortical Network Models from Joint Thalamic Single-Electrode and Cortical Laminar-Electrode Recordings in the Rat Barrel System.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000328

By:

Blomquist, Patrick;
Devor, Anna;
Indahl, Ulf G.;
Ulbert, Istvan;
Einevoll, Gaute T.;
Dale, Anders M.

Publication type:

Article

T-Cell Epitope Prediction: Rescaling Can Mask Biological Variation between MHC Molecules.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000327

By:

MacNamara, Aidan;
Kadolsky, Ulrich;
Bangham, Charles R. M.;
Asquith, Becca

Publication type:

Article

A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000326

By:

Krouk, Gabriel;
Tranchina, Daniel;
Lejay, Laurence;
Cruikshank, Alexis A.;
Shasha, Dennis;
Coruzzi, Gloria M.;
Gutiérrez, Rodrigo A.

Publication type:

Article

Ras Conformational Switching: Simulating Nucleotide- Dependent Conformational Transitions with Accelerated Molecular Dynamics.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000325

By:

Grant, Barry J.;
Gorfe, Alemayehu A.;
McCammon, J. Andrew

Publication type:

Article

Hypertrophy and/or Hyperplasia: Dynamics of Adipose Tissue Growth.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000324

By:

Junghyo Jo;
Gavrilova, Oksana;
Pack, Stephanie;
Jou, William;
Mullen, Shawn;
Sumner, Anne E.;
Cushman, Samuel W.;
Periwal, Vipul

Publication type:

Article

Modeling Signal Propagation Mechanisms and Ligand- Based Conformational Dynamics of the Hsp90 Molecular Chaperone Full-Length Dimer.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000323

By:

Morra, Giulia;
Verkhivker, Gennady;
Colombo, Giorgio

Publication type:

Article

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000322

By:

Hibbs, Matthew A.;
Myers, Chad L.;
Huttenhower, Curtis;
Hess, David C.;
Kai Li;
Caudy, Amy A.;
Troyanskaya, Olga G.

Publication type:

Article

Computational Model of the Insect Pheromone Transduction Cascade.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000321

By:

Yuqiao Gu;
Lucas, Philippe;
Rospars, Jean-Pierre

Publication type:

Article

Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000319

By:

Coelho, Pedro M. B. M.;
Salvador, Armindo;
Savageau, Michael A.

Publication type:

Article

Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000318

By:

Westesson, Oscar;
Holmes, Ian

Publication type:

Article

Robust Detection and Genotyping of Single Feature Polymorphisms from Gene Expression Data.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000317

By:

Minghui Wang;
Xiaohua Hu;
Gang Li;
Leach, Lindsey J.;
Potokina, Elena;
Druka, Arnis;
Waugh, Robbie;
Kearsey, Michael J.;
Zewei Luo

Publication type:

Article

Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000316

By:

Fong, Jessica H.;
Shoemaker, Benjamin A.;
Garbuzynskiy, Sergiy O.;
Lobanov, Michail Y.;
Galzitskaya, Oxana V.;
Panchenko, Anna R.

Publication type:

Article

Sm/Lsm Genes Provide a Glimpse into the Early Evolution of the Spliceosome.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000315

By:

Veretnik, Stella;
Wills, Christopher;
Youkharibache, Philippe;
Valas, Ruben E.;
Bourne, Philip E.

Publication type:

Article

Broadband Criticality of Human Brain Network Synchronization.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000314

By:

Kitzbichler, Manfred G.;
Smith, Marie L.;
Christensen, Søren R.;
Bullmore, Ed

Publication type:

Article

Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000313

By:

Alexandrov, Boian S.;
Gelev, Vladimir;
Sang Wook Yoo;
Bishop, Alan R.;
Rasmussen, Kim Ø.;
Usheva, Anny

Publication type:

Article

Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000312

By:

Thiele, Ines;
Jamshidi, Neema;
Fleming, Ronan M. T.;
Palsson, Bernhard Ø.

Publication type:

Article

Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000311

By:

Chun Ye;
Galbraith, Simon J.;
Liao, James C.;
Eskin, Eleazar

Publication type:

Article

Cortical Factor Feedback Model for Cellular Locomotion and Cytofission.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000310

By:

Nishimura, Shin I.;
Ueda, Masahiro;
Sasai, Masaki

Publication type:

Article

Mechanism of Action of Cyclophilin A Explored by Metadynamics Simulations.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000309

By:

Leone, Vanessa;
Lattanzi, Gianluca;
Molteni, Carla;
Carloni, Paolo

Publication type:

Article

GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000308

By:

Kumar, Vinay Satish;
Maranas, Costas D.

Publication type:

Article

Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000307

By:

Bahrami, Arash;
Assadi, Amir H.;
Markley, John L.;
Eghbalnia, Hamid R.

Publication type:

Article

Mechanical Network in Titin Immunoglobulin from Force Distribution Analysis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000306

By:

Stacklies, Wolfram;
Vega, M. Cristina;
Wilmanns, Matthias;
Gräter, Frauke

Publication type:

Article

Timing the Emergence of Resistance to Anti-HIV Drugs with Large Genetic Barriers.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000305

By:

Arora, Pankhuri;
Dixit, Narendra M.

Publication type:

Article

Detection of Alpha-Rod Protein Repeats Using a Neural Network and Application to Huntingtin.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000304

By:

Palidwor, Gareth A.;
Shcherbinin, Sergey;
Huska, Matthew R.;
Rasko, Tamas;
Stelzl, Ulrich;
Arumughan, Anup;
Foulle, Raphaele;
Porras, Pablo;
Sanchez-Pulido, Luis;
Wanker, Erich E.;
Andrade-Navarro, Miguel A.

Publication type:

Article

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000303

By:

Surkova, Svetlana;
Spirov, Alexander V.;
Gursky, Vitaly V.;
Janssens, Hilde;
Kim, Ah-Ram;
Radulescu, Ovidiu;
Vanario-Alonso, Carlos E.;
Sharp, David H.;
Samsonova, Maria;
Reinitz, John

Publication type:

Article

The Modulation Transfer Function for Speech Intelligibility.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000302

By:

Elliott, Taffeta M.;
Theunissen, Frédéric E.

Publication type:

Article

Understanding Pitch Perception as a Hierarchical Process with Top-Down Modulation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000301

By:

Balaguer-Ballester, Emili;
Clark, Nicholas R.;
Coath, Martin;
Krumbholz, Katrin;
Denham, Susan L.

Publication type:

Article

Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000300

By:

Schwartz, Schraga;
Gal-Mark, Nurit;
Kfir, Nir;
Oren, Ram;
Kim, Eddo;
Ast, Gil

Publication type:

Article

Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000299

By:

Xin He;
Xu Ling;
Sinha, Saurabh

Publication type:

Article

Steady-State Kinetic Modeling Constrains Cellular Resting States and Dynamic Behavior.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000298

By:

Purvis, Jeremy E.;
Radhakrishnan, Ravi;
Diamond, Scott L.

Publication type:

Article

Biomedical Discovery Acceleration, with Applications to Craniofacial Development.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000215

By:

Leach, Sonia M.;
Tipney, Hannah;
Weiguo Feng;
Baumgartner Jr., William A.;
Kasliwal, Priyanka;
Schuyler, Ronald P.;
Williams, Trevor;
Spritz, Richard A.;
Hunter, Lawrence

Publication type:

Article