Works matching DE "AMINO acid sequence"

Results: 5000

Exploring hydrophilic sequence space to search for uncharted foldable proteins by AlphaFold2.

Published in:

Biophysics & Physicobiology, 2025, v. 22, n. 1, p. 1, doi. 10.2142/biophysico.bppb-v22.0005

By:

Naoki Tomita;
Hiroki Onoda;
Chavas, Leonard M. G.;
Chikenji, George

Publication type:

Article

Accurate prediction of virulence factors using pre-train protein language model and ensemble learning.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11694-8

By:

Li, Guanghui;
Zhou, Jian;
Luo, Jiawei;
Liang, Cheng

Publication type:

Article

番茄 SIMYB52 基因鉴定、亚细胞定位及表达分析: 基因的表达受高盐、低温.

Published in:

Acta Agriculturae Zhejiangensis, 2025, v. 37, n. 4, p. 808, doi. 10.3969/j.issn.1004-1524.20240596

By:

狄延翠;
嵇泽琳;
王媛媛;
娄世浩;
张涛;
国志信;
申顺善;
朴风植;
杜南山;
董晓星;
董韩

Publication type:

Article

Identification and characterization of a novel haemolytic and haemagglutinating bifunctional lectin from the coral Acropora millepora.

Published in:

Journal of Biochemistry, 2025, v. 177, n. 5, p. 375, doi. 10.1093/jb/mvaf010

By:

Takahashi, Yuki;
Kamimura, Ryosuke;
Toyama, Ryo;
Kita, Shun;
Ushijima, Yuki;
Taniyama, Shigeto;
Unno, Hideaki;
Hatakeyama, Tomomitsu;
Goda, Shuichiro

Publication type:

Article

不同种植物中 HMGR 基因的生物信息学分析.

Published in:

Journal of Shanxi Agricultural Sciences, 2025, v. 53, n. 3, p. 27, doi. 10.3969/j.issn.1002-2481.2025.03.04

By:

李娜;
樊裕璇;
韩红艳;
宋宇琴;
李六林;
赵红梅

Publication type:

Article

Interaction and Digestive Characteristics of Yak Skin Peptide with EGCG.

Published in:

Modern Food Science & Technology, 2025, v. 41, n. 4, p. 152, doi. 10.13982/j.mfst.1673-9078.2025.4.0335

By:

HUANG Yurong;
YU Jiale;
ZHANG Ziyao;
WANG Hongze;
CAO Mengyun;
JIN Yan;
ZHANG Min

Publication type:

Article

Actinobacteria of the Genus Streptomyces–A Reservoir of Aminoglycoside Acetyltransferase Genes.

Published in:

Russian Journal of Genetics, 2025, v. 61, n. 4, p. 365, doi. 10.1134/S102279542470176X

By:

Alekseeva, M. G.;
Ratkin, A. V.;
Galanova, O. O.;
Danilenko, V. N.

Publication type:

Article

Epidemiology and genetic diversity of respiratory syncytial virus in adults 50 years and older with acute respiratory infections in Accra, Ghana.

Published in:

BMC Infectious Diseases, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12879-025-11071-6

By:

Antwi, Comfort Nuamah;
Dzudzor, Bartholomew;
Aboagye, James Odame;
Abayateye, Vishnu Nene Limon;
Quarcoo, Joseph Ahia;
Anang, Asantewa Sisi Yaa;
Whyte, Gloria Gifty;
Odoom, John Kofi;
Obodai, Evangeline

Publication type:

Article

Purification and Molecular Characterization of a Mammalian Neurotoxin as a Pharmaceutical Tool from the Venom of Iranian Scorpion Androctonus crassicauda.

Published in:

Journal of Arthropod-Borne Diseases, 2024, v. 18, n. 3, p. 238, doi. 10.18502/jad.v18i3.18575

By:

Rabiei, Hadi;
Zare-Mirakabadi, Abbas;
Mohtat, Bita;
Mirza, Behrooz

Publication type:

Article

CaLMPhosKAN: prediction of general phosphorylation sites in proteins via fusion of codon aware embeddings with amino acid aware embeddings and wavelet-based Kolmogorov–Arnold network Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf124

By:

Pratyush, Pawel;
Carrier, Callen;
Pokharel, Suresh;
Ismail, Hamid D;
Chaudhari, Meenal;
KC, Dukka B

Publication type:

Article

Identification, Molecular Characterization and Preliminary Functional Analysis of Three SLC27A Full-CDS cDNAs from Water Buffalo (Bubalus bubalis).

Published in:

Indian Journal of Animal Research, 2025, v. 59, n. 4, p. 548, doi. 10.18805/IJAR.BF-1828

By:

Fangting Zhou

Publication type:

Article

ACE2 Expression Patterns Across Mammals and Key Findings for SARS-CoV-2 Model Development for Human and Animal Research.

Published in:

Pakistan Veterinary Journal, 2025, v. 45, n. 1, p. 312, doi. 10.29261/pakvetj/2025.142

By:

Ali, Ashiq;
Irshad, Urooj;
Ziyi Ji;
Azmat, Urooj;
Akbar, Kaynaat;
Tong Xin;
Zhongjing Su

Publication type:

Article

Morphology, Molecular Characterization, and Phylogeny of Travassosius rufus Khalil, 1922 (Strongylidea: Trichostrongylidae), a Parasite from Endangered Sino-Mongolian Beaver (Castor fiber birulai) in Xinjiang, China.

Published in:

Animals (2076-2615), 2025, v. 15, n. 9, p. 1339, doi. 10.3390/ani15091339

By:

Jia, Huiping;
Chu, Wenwen;
Zhang, Dong;
Li, Kai;
Huang, Wenpu;
Li, Xiaoyun

Publication type:

Article

Identifying the DNA methylation preference of transcription factors using ProtBERT and SVM.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012513

By:

Li, Yanchao;
Zou, Quan;
Dai, Qi;
Stalin, Antony;
Luo, Ximei

Publication type:

Article

Effect of Reactive Oxygen and Nitrogen Species Generated by Electric Discharges on the Primary Structure of Proteins and Biological Materials.

Published in:

High Energy Chemistry, 2025, v. 59, n. 2, p. 202, doi. 10.1134/S0018143924701716

By:

Piskarev, I. M.;
Ivanova, I. P.

Publication type:

Article

LiSENCE: A Hybrid Ligand and Sequence Encoder Network for Predicting CYP450 Inhibitors in Safe Multidrug Administration.

Published in:

Mathematics (2227-7390), 2025, v. 13, n. 9, p. 1376, doi. 10.3390/math13091376

By:

Atwereboannah, Abena Achiaa;
Wu, Wei-Ping;
Yussif, Sophyani B.;
Abdullah, Muhammed Amin;
Tenagyei, Edwin K.;
Ukuoma, Chiagoziem C.;
Gu, Yeong Hyeon;
Al-antari, Mugahed A.

Publication type:

Article

Phylogenomic Inference Suggests Differential Deep Time Phylogenetic Signals from Nuclear and Organellar Genomes in Gymnosperms.

Published in:

Plants (2223-7747), 2025, v. 14, n. 9, p. 1335, doi. 10.3390/plants14091335

By:

Lin, Yu-En;
Wu, Chung-Shien;
Wu, Yu-Wei;
Chaw, Shu-Miaw

Publication type:

Article

Genomic Analysis of Two Histamine-Producing Strains Isolated from Yellowfin Tuna.

Published in:

Foods, 2025, v. 14, n. 9, p. 1532, doi. 10.3390/foods14091532

By:

Wang, Yazhe;
Wang, Di;
Chen, Shengjun;
Yu, Gang;
Ma, Zhenhua;
Wei, Ya;
Li, Chunsheng;
Wang, Yueqi;
Shen, Chaoming;
Zhao, Yongqiang

Publication type:

Article

De Novo Gene Birth.

Published in:

Molecular Biology, 2025, v. 59, n. 1, p. 17, doi. 10.1134/S0026893324700687

By:

Aristova, E. O.;
Volkhin, I. A.;
Denisova, A. A.;
Nikitin, P. A.;
Petrukhin, E. R.

Publication type:

Article

Genotypic diversity and molecular characterization of DENV-2 in a Peruvian endemic region from 2016 to 2022: displacement of American/Asian genotype.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1558761

By:

Tarazona-Castro, Yordi;
Aguilar-Luis, Miguel Angel;
Silva-Caso, Wilmer;
Watson, Hugh;
Zavaleta-Gavidia, Victor;
Aquino-Ortega, Ronald;
Del Valle, Luis J.;
Bazan-Mayra, Jorge;
Mayta Huatuco, Egma;
del Valle-Mendoza, Juana

Publication type:

Article

Chromosome-level genome assembly of the doctor fish (Garra rufa).

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05101-w

By:

Kon, Tetsuo;
Kon-Nanjo, Koto;
Handayani, Kiki Syaputri;
Zang, Liqing;
Fahrurrozi, Fahrurrozi;
Simakov, Oleg;
Gultom, Victor David Nico;
Shimada, Yasuhito

Publication type:

Article

A Method for Functional Protein Classification Enhanced by Multiple Sequence Alignment.

Published in:

IAENG International Journal of Computer Science, 2025, v. 52, n. 3, p. 637

By:

Pengda Zhang

Publication type:

Article

In-Silico and Computational Active Site-Driven Design and Characterization of Beta-NGF-Aβ Fusion Protein as a Novel and Targeted Alzheimer's Disease Therapy.

Published in:

Journal of Computational Biophysics & Chemistry, 2025, v. 24, n. 8, p. 1023, doi. 10.1142/S2737416525500085

By:

Naveed, Muhammad;
Ibrahim, Shumaila;
Aziz, Tariq;
Khatoon, Khadija;
Asim, Muhammad;
Majeed, Muhammad Nouman;
Hussain, Nageen;
Alhomrani, Majid;
Alsanie, Walaa F.;
Alamri, Abdulhakeem S.

Publication type:

Article

Therapeutic peptides: chemical strategies fortify peptides for enhanced disease treatment efficacy.

Published in:

Amino Acids, 2025, v. 57, n. 1, p. 1, doi. 10.1007/s00726-025-03454-5

By:

Li, Qingmei;
Chao, Wen;
Qiu, Lijuan

Publication type:

Article

Comparison of Classical and Hybrid Quantum Models in Secondary Structure Protein Prediction.

Published in:

International Journal of High School Research, 2025, v. 7, n. 3, p. 87, doi. 10.36838/v7i3.14

By:

Shubin, Quaid

Publication type:

Article

Sensitivity analysis on protein-protein interaction networks through deep graph networks.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06140-1

By:

Dipalma, Alessandro;
Fontanesi, Michele;
Micheli, Alessio;
Milazzo, Paolo;
Podda, Marco

Publication type:

Article

Finding patterns in lung cancer protein sequences for drug repurposing.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0322546

By:

Otero-Carrasco, Belén;
Nevado, Paloma Tejera;
Muñoz, Rafael Artiñano;
Ferreiro, Gema Díaz;
Pérez, Aurora Pérez;
Caraça-Valente Hernández, Juan Pedro;
Rodríguez-González, Alejandro

Publication type:

Article

中国辣椒 ADH 基因家族鉴定及表达分析.

Published in:

Guangdong Agricultural Sciences, 2025, v. 52, n. 2, p. 95, doi. 10.16768/j.issn.1004-874X.2025.02.008

By:

叶楚;
林蔚;
王川;
谢炳春;
徐小万;
徐晓美;
王恒明;
吕俊恒;
邓明华;
吴智明;
李涛;
衡周

Publication type:

Article

Cloning and Characterization of Adiponectin Receptors in Rana amurensis During Aeromonas hydrophila Infection.

Published in:

Aquaculture Research, 2025, v. 2025, p. 1, doi. 10.1155/are/3562469

By:

Sun, Yugang;
Xu, Dongmei;
A, Jinhan;
Ren, Huimin;
Hassan, Hina;
Liu, Yufen;
Liu, Peng;
Zhao, Wenge

Publication type:

Article

iSeqSearch: incremental protein search for iBlast/iMMSeqs2/iDiamond.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19171

By:

Yoo, Hyunwoo;
Refahi, Mohammadsaleh;
Polikar, Robi;
Sokhansanj, Bahrad A.;
Brown, James R.;
Rosen, Gail L.

Publication type:

Article

Study of the Effect of X-Ray Radiation on the Structural Characteristics of Bovine Serum Albumin Protein Using High-Resolution Liquid Chromatography−Mass Spectrometry.

Published in:

Journal of Analytical Chemistry, 2025, v. 80, n. 3, p. 515, doi. 10.1134/S1061934824701983

By:

Brown, A. V.;
Bliznyuk, U. A.;
Borshchegovskaya, P. Yu.;
Ipatova, V. S.;
Chernyaev, A. P.;
Ananieva, I. A.;
Rodin, I. A.

Publication type:

Article

DEKP: a deep learning model for enzyme kinetic parameter prediction based on pretrained models and graph neural networks.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf187

By:

Wang, Yizhen;
Cheng, Li;
Zhang, Yanyun;
Cao, Yujia;
Alghazzawi, Daniyal

Publication type:

Article

ScFold: a GNN-based model for efficient inverse folding of short-chain proteins via spatial reduction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf156

By:

Zhong, Jiancheng;
Zou, Zhiwei;
Qiu, Jie;
Wang, Shaokai

Publication type:

Article

Deep generative model for protein subcellular localization prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf152

By:

Yuan, Guo-Hua;
Li, Jinzhe;
Yang, Zejun;
Chen, Yao-Qi;
Yuan, Zhonghang;
Chen, Tao;
Ouyang, Wanli;
Dong, Nanqing;
Yang, Li

Publication type:

Article

|$\mathcal{S}$|able: bridging the gap in protein structure understanding with an empowering and versatile pre-training paradigm.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf120

By:

Li, Jiashan;
Chen, Xi;
Huang, He;
Zeng, Mingliang;
Yu, Jingcheng;
Gong, Xinqi;
Ye, Qiwei

Publication type:

Article

Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf114

By:

Qiu, Sizhe;
Hu, Bozhen;
Zhao, Jing;
Xu, Weiren;
Yang, Aidong

Publication type:

Article

Exploring diverse approaches for predicting interferon-gamma release: utilizing MHC class II and peptide sequences.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf101

By:

Omran, Abir;
Amberg, Alexander;
Ecker, Gerhard F

Publication type:

Article

Integration of proteomics profiling data to facilitate discovery of cancer neoantigens: a survey.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf087

By:

Luo, Shifu;
Peng, Hui;
Shi, Ying;
Cai, Jiaxin;
Zhang, Songming;
Shao, Ningyi;
Li, Jinyan

Publication type:

Article

Correction: Complete genome and molecular characterization of spiranthes mosaic virus 3 from Phlox paniculata.

Published in:

2025

By:

Motsar, Elena;
Sharko, Fedor;
Sheveleva, Anna;
Savostyanova, Larisa;
Mitrofanova, Irina;
Chirkov, Sergei

Publication type:

Correction Notice

Alphanudiviral segments found in transcriptomes of the two-spotted spider mite, Tetranychus urticae (Acari: Tetranychidae).

Published in:

Virus Genes, 2025, v. 61, n. 3, p. 365, doi. 10.1007/s11262-025-02150-6

By:

Santos, Ethiane Rozo;
Petersen, Jirka Manuel;
Santana, Thaís Danielle Duarte;
Harrison, Robert L.;
Ardisson-Araújo, Daniel M. P.

Publication type:

Article

Upadacitinib and PD29 have anti-inflammatory and anti-oxidant effects on MCF-7 cells.

Published in:

Annals of Medical of Research, 2023, v. 30, n. 5, p. 590, doi. 10.5455/annalsmedres.2023.02.051

By:

Kocak, Ayse;
Yucebas, Irem;
Altin, Eslem

Publication type:

Article

Reconstruction of Ancestral Protein Sequences Using Autoregressive Generative Models.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf070

By:

Leonardis, Matteo De;
Pagnani, Andrea;
Barrat-Charlaix, Pierre

Publication type:

Article

Phyloformer: Fast, Accurate, and Versatile Phylogenetic Reconstruction with Deep Neural Networks.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf051

By:

Nesterenko, Luca;
Blassel, Luc;
Veber, Philippe;
Boussau, Bastien;
Jacob, Laurent

Publication type:

Article

In silico-based vaccine design against Naegleria fowleri causing primary amebic meningoencephalitis.

Published in:

Indian Journal of Pharmacology, 2024, v. 56, n. 2, p. 148, doi. 10.4103/ijp.ijp_482_23

By:

Yethindra, Vityala;
Ramanujam, Sai Kiran;
Mummadi, Dharani;
Kanteti, Krishna Priya;
Vityala, Srilaxmi;
Damineni, Ujwala

Publication type:

Article

Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes.

Published in:

PLoS Biology, 2016, v. 14, n. 5, p. 1, doi. 10.1371/journal.pbio.1002452

By:

Jack, Benjamin R.;
Meyer, Austin G.;
Echave, Julian;
Wilke, Claus O.

Publication type:

Article

Expanding the Regulatory Repertoire of GEFs.

Published in:

PLoS Biology, 2013, v. 11, n. 9, p. 1, doi. 10.1371/journal.pbio.1001654

By:

Robinson, Richard

Publication type:

Article

Genome Sequence of the Pea Aphid Acyrthosiphon pisum.

Published in:: PLoS Biology, 2010, v. 8, n. 2, p. 1, doi. 10.1371/journal.pbio.1000313
Publication type:: Article

Gene Sharing Yields an Enzyme with Two Binding Sites in One Subunit.

Published in:

PLoS Biology, 2009, v. 7, n. 3, p. e1000064, doi. 10.1371/journal.pbio.1000064

By:

Sedwick, Caitlin

Publication type:

Article

Systematic In Vivo Analysis of the Intrinsic Determinants of Amyloid β Pathogenicity.

Published in:

PLoS Biology, 2007, v. 5, n. 11, p. e290, doi. 10.1371/journal.pbio.0050290

By:

Luheshi, Leila M.;
Tartaglia, Gian Gaetano;
Brorsson, Ann-Christin;
Pawar, Amol P.;
Watson, Ian E.;
Chiti, Fabrizio;
Vendruscolo, Michele;
Lomas, David A.;
Dobson, Christopher M.;
Crowther, Damian C.

Publication type:

Article

Splicing and the Evolution of Proteins in Mammals.

Published in:

PLoS Biology, 2007, v. 5, n. 2, p. 343, doi. 10.1371/journal.pbio.0050014

By:

Parmley, Joanna L.;
Urrutia, Araxi O.;
Potrzebowski, Lukasz;
Kaessmann, Henrik;
Hurst, Laurence D.

Publication type:

Article