Works matching Gene libraries

Results: 5000

Construction of Gene Library of 20 kb DNAs from Parasporal Crystal in Bacillus thuringiensis Strain 4.0718: Phylogenetic Analysis and Molecular Docking.

Published in:

Current Microbiology, 2012, v. 64, n. 2, p. 106, doi. 10.1007/s00284-011-0038-7

By:

Wu, Feng;
Zhao, Xinmin;
Sun, Yunjun;
Li, Wenping;
Xia, Liqiu;
Ding, Xuezhi;
Yin, Jia;
Hu, Shengbiao;
Yu, Ziquan;
Tang, Ying

Publication type:

Article

Novel Antibiotic Resistance Genes Identified by Functional Gene Library Screening in Stenotrophomonas maltophilia and Chryseobacterium spp. Bacteria of Soil Origin.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 7, p. 6037, doi. 10.3390/ijms24076037

By:

Klimkaitė, Laurita;
Ragaišis, Ignas;
Krasauskas, Renatas;
Ružauskas, Modestas;
Sužiedėlienė, Edita;
Armalytė, Julija

Publication type:

Article

Robust synthetic gene network design via library-based search method.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2700, doi. 10.1093/bioinformatics/btr465

By:

Wu, Chih-Hung;
Lee, Hsiao-Ching;
Chen, Bor-Sen

Publication type:

Article

A knockout cell library of GPI biosynthetic genes for functional studies of GPI-anchored proteins.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02337-1

By:

Liu, Si-Si;
Liu, Yi-Shi;
Guo, Xin-Yu;
Murakami, Yoshiko;
Yang, Ganglong;
Gao, Xiao-Dong;
Kinoshita, Taroh;
Fujita, Morihisa

Publication type:

Article

Massive integration of large gene libraries in the chromosome of Escherichia coli.

Published in:

Microbial Biotechnology, 2024, v. 17, n. 1, p. 1, doi. 10.1111/1751-7915.14367

By:

Cerdán, Lidia;
Álvarez, Beatriz;
Fernández, Luis Ángel

Publication type:

Article

Identification and characterization of a novel methionine γ-lyase gene from deep-sea sediment metagenomic library.

Published in:

World Journal of Microbiology & Biotechnology, 2011, v. 27, n. 11, p. 2729, doi. 10.1007/s11274-011-0748-9

By:

Li, Huixian;
Huang, Yali;
Zhang, Jiong;
Du, Jikun;
Tan, Hongming;
Lu, Yongjun;
Zhou, Shining

Publication type:

Article

K-shuff: A Novel Algorithm for Characterizing Structural and Compositional Diversity in Gene Libraries.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167634

By:

Jangid, Kamlesh;
Kao, Ming-Hung;
Lahamge, Aishwarya;
Williams, Mark A.;
Rathbun, Stephen L.;
Whitman, William B.

Publication type:

Article

CRISPR/Cas‐based screening of a gene activation library in Saccharomyces cerevisiae identifies a crucial role of OLE1 in thermotolerance.

Published in:

Microbial Biotechnology, 2019, v. 12, n. 6, p. 1154, doi. 10.1111/1751-7915.13333

By:

Li, Pengsong;
Fu, Xiaofen;
Zhang, Lei;
Li, Shizhong

Publication type:

Article

A Robust and Versatile Method of Combinatorial Chemical Synthesis of Gene Libraries via Hierarchical Assembly of Partially Randomized Modules.

Published in:

PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0136778

By:

Popova, Blagovesta;
Schubert, Steffen;
Bulla, Ingo;
Buchwald, Daniela;
Kramer, Wilfried

Publication type:

Article

Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 97, doi. 10.1186/1471-2105-12-97

By:

Milnthorpe, Andrew T.;
Soloviev, Mikhail

Publication type:

Article

Vanadium bromoperoxidase-coupled fluorescent assay for flow cytometry sorting of glucose oxidase gene libraries in double emulsions.

Published in:

Analytical & Bioanalytical Chemistry, 2012, v. 404, n. 5, p. 1439, doi. 10.1007/s00216-012-6234-x

By:

Prodanovic, Radivoje;
Ostafe, Raluca;
Blanusa, Milan;
Schwaneberg, Ulrich

Publication type:

Article

Chimeric Gene Library Construction by a Simple and Highly Versatile Method Using Recombination-Dependent Exponential Amplification.

Published in:

Biotechnology Progress, 2003, v. 19, n. 5, p. 1460, doi. 10.1021/bp034029t

By:

Ikeuchi;
A.;
Kawarasaki;
Y.;
Shinbata;
T.;
Yamane

Publication type:

Article

Towards genetic genome projects: genomic library screening and gene-targeting vector construction in a single step.

Published in:

Nature Genetics, 2002, v. 30, n. 1, p. 31, doi. 10.1038/ng797

By:

Zhang, Pumin;
Li, Mamei Z.;
Elledge, Stephen J.

Publication type:

Article

Fine-tuning the expression of pathway gene in yeast using a regulatory library formed by fusing a synthetic minimal promoter with different Kozak variants.

Published in:

Microbial Cell Factories, 2021, v. 20, n. 1, p. 1, doi. 10.1186/s12934-021-01641-z

By:

Xu, Liping;
Liu, Pingping;
Dai, Zhubo;
Fan, Feiyu;
Zhang, Xueli

Publication type:

Article

The Effect of Protozoa on the Composition of Rumen Bacteria in Cattle Using 16S rRNA Gene Clone Libraries.

Published in:

Bioscience, Biotechnology & Biochemistry, 2005, v. 69, n. 3, p. 499, doi. 10.1271/bbb.69.499

By:

Ozutsumi, Yuhei;
Tajima, Kiyoshi;
Takenaka, Akio;
Itabashi, Hisao

Publication type:

Article

Mechanism-dependent selection of immunoglobulin gene library for obtaining covalent biocatalysts.

Published in:

Doklady Biochemistry & Biophysics, 2007, v. 415, n. 1, p. 179, doi. 10.1134/S1607672907040047

By:

Reshetnyak, A.;
Armentano, M.;
Morse, H.;
Friboulet, A.;
Makker, S.;
Tramontano, A.;
Knorre, V.;
Gabibov, A.;
Ponomarenko, N.

Publication type:

Article

Construction of hybrid gene libraries involving the circular permutation of DNA.

Published in:

Biotechnology Letters, 2001, v. 23, n. 4, p. 303, doi. 10.1023/A:1005642725295

By:

Ostermeier, Marc;
Benkovic, Stephen J.

Publication type:

Article

Novel genes are enriched in normalized cDNA libraries from drought-stressed seedlings of rice (Oryza sativa L. subsp. indica cv. Nagina 22).

Published in:

Genome, 2002, v. 45, n. 1, p. 204, doi. 10.1139/g01-114

By:

Reddy, Arjula R;
Ramakrishna, W;
Sekhar, A Chandra;
Ithal, Nagabhushana;
Babu, P Ravindra;
Bonaldo, M F;
Soares, M B;
Bennetzen, Jeffrey L

Publication type:

Article

ERgene: Python library for screening endogenous reference genes.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-75586-5

By:

Zeng, Zehua;
Xiong, Yuzhe;
Guo, Wenhuan;
Du, Hongwu

Publication type:

Article

A High-Throughput Screening System Based on Droplet Microfluidics for Glucose Oxidase Gene Libraries.

Published in:

Molecules, 2020, v. 25, n. 10, p. 2418, doi. 10.3390/molecules25102418

By:

Prodanović, Radivoje;
Ung, W. Lloyd;
Ilić Đurđić, Karla;
Fischer, Rainer;
Weitz, David A.;
Ostafe, Raluca;
Vladisavljević, Goran T.;
Bolognesi, Guido

Publication type:

Article

Arrayed CRISPRi library to suppress genes required for Schizosaccharomyces pombe viability.

Published in:

Journal of Cell Biology, 2025, v. 224, n. 1, p. 1, doi. 10.1083/jcb.202404085

By:

Ken Ishikawa;
Saeko Soejima;
Takashi Nishimura;
Shigeaki Saitoh

Publication type:

Article

MitoGeneExtractor: Efficient extraction of mitochondrial genes from next‐generation sequencing libraries.

Published in:

Methods in Ecology & Evolution, 2023, v. 14, n. 4, p. 1017, doi. 10.1111/2041-210X.14075

By:

Brasseur, Marie V.;
Astrin, Jonas J.;
Geiger, Matthias F.;
Mayer, Christoph

Publication type:

Article

CLONING, EXPRESSION AND CHARACTERIZATION OF AN ESTERASE GENE IN A METAGENOMIC LIBRARY OF TRADITIONAL FERMENTED FOOD.

Published in:

Acta Universitatis Cinbinesis, Series E : Food Technology, 2018, v. 22, n. 2, p. 33, doi. 10.2478/aucft-2018-0010

By:

Mao YE;
Maocheng DENG

Publication type:

Article

Methodology optimizing SAGE library tag-to-gene mapping: application to Leishmania.

Published in:: BMC Research Notes, 2012, v. 5, n. 1, p. 74, doi. 10.1186/1756-0500-5-74
Publication type:: Article

Amplification of complex gene libraries by emulsion PCR.

Published in:

Nature Methods, 2006, v. 3, n. 7, p. 545, doi. 10.1038/nmeth896

By:

Williams, Richard;
Peisajovich, Sergio G.;
Miller, Oliver J.;
Magdassi, Shlomo;
Tawfik, Dan S.;
Griffiths, Andrew D.

Publication type:

Article

USER friendly DNA recombination (USERec): a simple and flexible near homology-independent method for gene library construction.

Published in:

PEDS: Protein Engineering, Design & Selection, 2010, v. 23, n. 1, p. 1, doi. 10.1093/protein/gzp063

By:

Villiers, B. R. M.;
Stein, V.;
Hollfelder, F.

Publication type:

Article

Identification and Characterization of Immunogenic Genes from Genomic Expression Library of Mycoplasma ovipneumoniae.

Published in:

Kafkas Universitesi Veteriner Fakultesi Dergisi, 2020, v. 26, n. 2, p. 201, doi. 10.9775/kvfd.2019.22730

By:

Mengfan QIAO;
Cheng CHEN;
Sufang YANG;
Xingxing ZHANG;
Lulu TIAN;
Haiting LU;
Shasha GONG;
Xuepeng CAI;
Qingling MENG;
Jun QIAO

Publication type:

Article

Construction and Application of Cultural Gene Library of Ancestral Hall in Canton Region.

Published in:

Technical Gazette / Tehnički Vjesnik, 2024, v. 31, n. 3, p. 993, doi. 10.17559/TV-20231013001023

By:

Yanling ZHANG;
Xu LUO;
Xiaohe XU;
MAK, Kaman;
RUAN, Dandan

Publication type:

Article

Characterization of rubber tree microRNA in phytohormone response using large genomic DNA libraries, promoter sequence and gene expression analysis.

Published in:

Molecular Genetics & Genomics, 2014, v. 289, n. 5, p. 921, doi. 10.1007/s00438-014-0862-0

By:

Kanjanawattanawong, Supanath;
Tangphatsornruang, Sithichoke;
Triwitayakorn, Kanokporn;
Ruang-areerate, Panthita;
Sangsrakru, Duangjai;
Poopear, Supannee;
Somyong, Suthasinee;
Narangajavana, Jarunya

Publication type:

Article

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.19760

By:

Horlbeck, Max A.;
Gilbert, Luke A.;
Villalta, Jacqueline E.;
Adamson, Britt;
Pak, Ryan A.;
Yuwen Chen;
Fields, Alexander P.;
Chong Yon Park;
Corn, Jacob E.;
Kampmann, Martin;
Weissman, Jonathan S.

Publication type:

Article

The GNAT library for local and remote gene mention normalization.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2769, doi. 10.1093/bioinformatics/btr455

By:

Hakenberg, Jörg;
Gerner, Martin;
Haeussler, Maximilian;
Solt, Illés;
Plake, Conrad;
Schroeder, Michael;
Gonzalez, Graciela;
Nenadic, Goran;
Bergman, Casey M.

Publication type:

Article

GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data.

Published in:

Genes, 2023, v. 14, n. 2, p. 269, doi. 10.3390/genes14020269

By:

Schmitt, Pauline;
Sorin, Baptiste;
Frouté, Timothée;
Parisot, Nicolas;
Calevro, Federica;
Peignier, Sergio

Publication type:

Article

Functional Genomic Identification of Cadmium Resistance Genes from a High GC Clone Library by Coupling the Sanger and PacBio Sequencing Strategies.

Published in:

Genes, 2020, v. 11, n. 1, p. 7, doi. 10.3390/genes11010007

By:

Chen, Jinghao;
Xing, Chao;
Zheng, Xin;
Li, Xiaofang

Publication type:

Article

Sequence analysis of a rainbow trout cDNA library and creation of a gene index.

Published in:

Cytogenetic & Genome Research, 2003, v. 102, n. 1-4, p. 347, doi. 10.1159/000075773

By:

Rexroad III, Caird E.;
Lee, Y.;
Keele, J. W.;
Karamycheva, S.;
Brown, G.;
Koop, B.;
Gahr, S. A.;
Palti, Y.;
Quackenbush, J.

Publication type:

Article

Characterization of alginate lyase gene using a metagenomic library constructed from the gut microflora of abalone.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2012, v. 39, n. 4, p. 585, doi. 10.1007/s10295-011-1054-0

By:

Sim, Su-Jung;
Baik, Keun;
Park, Seong;
Choe, Han;
Seong, Chi;
Shin, Tai-Sun;
Woo, Hee;
Cho, Jeong-Yong;
Kim, Duwoon

Publication type:

Article

A genome‐scale yeast library with inducible expression of individual genes.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 6, p. 1, doi. 10.15252/msb.202110207

By:

Arita, Yuko;
Kim, Griffin;
Li, Zhijian;
Friesen, Helena;
Turco, Gina;
Wang, Rebecca Y;
Climie, Dale;
Usaj, Matej;
Hotz, Manuel;
Stoops, Emily H;
Baryshnikova, Anastasia;
Boone, Charles;
Botstein, David;
Andrews, Brenda J;
McIsaac, R Scott

Publication type:

Article

Construction of a Spinach Bacterial Artificial Chromosome (BAC) Library as a Resource for Gene Identification and Marker Development.

Published in:

Plant Molecular Biology Reporter, 2015, v. 33, n. 6, p. 1996, doi. 10.1007/s11105-015-0891-9

By:

Feng, Chunda;
Bluhm, Burt;
Correll, James

Publication type:

Article

Burkholderia pseudomallei natural competency and DNA catabolism: Identification and characterization of relevant genes from a constructed fosmid library.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189018

By:

Norris, Michael H.;
Heacock-Kang, Yun;
Zarzycki-Siek, Jan;
Bluhm, Andrew P.;
McMillan, Ian A.;
Schweizer, Herbert P.;
Hoang, Tung T.

Publication type:

Article

Creation of genome-wide protein expression libraries using random activation of gene expression.

Published in:

Nature Biotechnology, 2001, v. 19, n. 5, p. 440, doi. 10.1038/88107

By:

Harrington, John J.;
Sherf, Bruce;
Rundlett, Stephen;
Jackson, P. David;
Perry, Rob;
Cain, Scott;
Leventhal, Christina;
Thornton, Mark;
Ramachandran, Rakesh;
Whittington, Jessica;
Lerner, Laura;
Costanzo, Dana;
McElligott, Karen;
Boozer, Sherry;
Mays, Robert;
Smith, Emery;
Veloso, Neil;
Klika, Alison;
Hess, Jennifer

Publication type:

Article

Functional genomics screen with pooled shRNA library and gene expression profiling with extracts of Azadirachta indica identify potential pathways for therapeutic targets in head and neck squamous cell carcinoma.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6464

By:

Krishnan, Neeraja M.;
Hiroto Katoh;
Palve, Vinayak;
Pareek, Manisha;
Reiko Sato;
Shumpei Ishikawa;
Panda, Binay

Publication type:

Article

Express sequence tag analysis - Identification of anseriformes trypsin genes from full-length cDNA library of the duck ( Anas platyrhynchos) and characterization of their structure and function.

Published in:

Biochemistry (00062979), 2016, v. 81, n. 2, p. 152, doi. 10.1134/S0006297916020097

By:

Yu, Haining;
Cai, Shasha;
Gao, Jiuxiang;
Wang, Chen;
Qiao, Xue;
Wang, Hui;
Feng, Lan;
Wang, Yipeng

Publication type:

Article

Microbial community in persistent apical periodontitis: a 16S r RNA gene clone library analysis.

Published in:

International Endodontic Journal, 2015, v. 48, n. 8, p. 717, doi. 10.1111/iej.12361

By:

Zakaria, M. N.;
Takeshita, T.;
Shibata, Y.;
Maeda, H.;
Wada, N.;
Akamine, A.;
Yamashita, Y.

Publication type:

Article

Identification of a new gene encoding 5-enolpyruvylshikimate-3-phosphate synthase using genomic library construction strategy.

Published in:

Molecular Biology Reports, 2012, v. 39, n. 12, p. 10939, doi. 10.1007/s11033-012-1994-0

By:

Zhou, Chang-Yan;
Tian, Yong-Sheng;
Xu, Zhi-Sheng;
Zhao, Wei;
Chen, Chen;
Bao, Wen-Hua;
Bian, Lin;
Cai, Run;
Wu, Ai-Zhong

Publication type:

Article

Construction and evaluation of Brassica rapa orphan genes overexpression library.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1532449

By:

Jiang, Mingliang;
Zhan, Zongxiang;
Li, Xiaonan;
Piao, Zhongyun

Publication type:

Article

Construction of a tunable promoter library to optimize gene expression in Methylomonas sp. DH-1, a methanotroph, and its application to cadaverine production.

Published in:

Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-021-02077-8

By:

Lee, Hyang-Mi;
Ren, Jun;
Yu, Myeong-Sang;
Kim, Hyunjoo;
Kim, Woo Young;
Shen, Junhao;
Yoo, Seung Min;
Eyun, Seong-il;
Na, Dokyun

Publication type:

Article

Gene discovery by ribozyme and siRNA libraries.

Published in:

Nature Reviews Molecular Cell Biology, 2005, v. 6, n. 5, p. 413, doi. 10.1038/nrm1646

By:

Akashi, Hideo;
Matsumoto, Sahohime;
Taira, Kazunari

Publication type:

Article

PascalX: a Python library for GWAS gene and pathway enrichment tests.

Published in:

Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad296

By:

Krefl, Daniel;
Cammarata, Alessandro Brandulas;
Bergmann, Sven

Publication type:

Article

BYASE: a Python library for estimating gene and isoform level allele-specific expression.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4955, doi. 10.1093/bioinformatics/btaa636

By:

Dong, Lili;
Wang, Jianan;
Wang, Guohua

Publication type:

Article

High throughput method of 16S rRNA gene sequencing library preparation for plant root microbial community profiling.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-23943-x

By:

Kumaishi, Kie;
Usui, Erika;
Suzuki, Kenta;
Kobori, Shungo;
Sato, Takumi;
Toda, Yusuke;
Takanashi, Hideki;
Shinozaki, Satoshi;
Noda, Munehiro;
Takakura, Akiko;
Matsumoto, Kayoko;
Yamasaki, Yuji;
Tsujimoto, Hisashi;
Iwata, Hiroyoshi;
Ichihashi, Yasunori

Publication type:

Article

Accurate gene consensus at low nanopore coverage.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac102

By:

Espada, Rocío;
Zarevski, Nikola;
Dramé-Maigné, Adèle;
Rondelez, Yannick

Publication type:

Article