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Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53784-3
By:
- Nou, Nancy O.;
- Covington, Jonathan K.;
- Lai, Dengxun;
- Mayali, Xavier;
- Seymour, Cale O.;
- Johnston, Juliet;
- Jiao, Jian-Yu;
- Buessecker, Steffen;
- Mosier, Damon;
- Muok, Alise R.;
- Torosian, Nicole;
- Cook, Allison M.;
- Briegel, Ariane;
- Woyke, Tanja;
- Eloe-Fadrosh, Emiley;
- Shapiro, Nicole;
- Bryan, Scott G.;
- Sleezer, Savannah;
- Dimapilis, Joshua;
- Gonzalez, Cristina
Publication type:
Article
From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology.
Published in:
2024
By:
- Anthony, Winston E.;
- Allison, Steven D.;
- Broderick, Caitlin M.;
- Chavez Rodriguez, Luciana;
- Clum, Alicia;
- Cross, Hugh;
- Eloe-Fadrosh, Emiley;
- Evans, Sarah;
- Fairbanks, Dawson;
- Gallery, Rachel;
- Gontijo, Júlia Brandão;
- Jones, Jennifer;
- McDermott, Jason;
- Pett-Ridge, Jennifer;
- Record, Sydne;
- Rodrigues, Jorge Luiz Mazza;
- Rodriguez-Reillo, William;
- Shek, Katherine L.;
- Takacs-Vesbach, Tina;
- Blanchard, Jeffrey L.
Publication type:
Letter
COVID-19 pandemic reveals the peril of ignoring metadata standards.
Published in:
Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0524-5
By:
- Schriml, Lynn M.;
- Chuvochina, Maria;
- Davies, Neil;
- Eloe-Fadrosh, Emiley A.;
- Finn, Robert D.;
- Hugenholtz, Philip;
- Hunter, Christopher I.;
- Hurwitz, Bonnie L.;
- Kyrpides, Nikos C.;
- Meyer, Folker;
- Mizrachi, Ilene Karsch;
- Sansone, Susanna-Assunta;
- Sutton, Granger;
- Tighe, Scott;
- Walls, Ramona
Publication type:
Article
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3
By:
- Högfors-Rönnholm, Eva;
- Lopez-Fernandez, Margarita;
- Christel, Stephan;
- Brambilla, Diego;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Roux, Simon;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Copeland, Alex;
- Chen, I-Min A.;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Harmon-Smith, Miranda;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D666, doi. 10.1093/nar/gky901
By:
- Chen, I-Min A;
- Chu, Ken;
- Palaniappan, Krishna;
- Pillay, Manoj;
- Ratner, Anna;
- Huang, Jinghua;
- Huntemann, Marcel;
- Varghese, Neha;
- White, James R;
- Seshadri, Rekha;
- Smirnova, Tatyana;
- Kirton, Edward;
- Jungbluth, Sean P;
- Woyke, Tanja;
- Eloe-Fadrosh, Emiley A;
- Ivanova, Natalia N;
- Kyrpides, Nikos C
Publication type:
Article
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D678, doi. 10.1093/nar/gky1127
By:
- Paez-Espino, David;
- Roux, Simon;
- Chen, I-Min A;
- Palaniappan, Krishna;
- Ratner, Anna;
- Chu, Ken;
- Huntemann, Marcel;
- Reddy, T B K;
- Pons, Joan Carles;
- Llabrés, Mercè;
- Eloe-Fadrosh, Emiley A;
- Ivanova, Natalia N;
- Kyrpides, Nikos C
Publication type:
Article
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25646-9
By:
- Martin, Kara;
- Schmidt, Katrin;
- Toseland, Andrew;
- Boulton, Chris A.;
- Barry, Kerrie;
- Beszteri, Bánk;
- Brussaard, Corina P. D.;
- Clum, Alicia;
- Daum, Chris G.;
- Eloe-Fadrosh, Emiley;
- Fong, Allison;
- Foster, Brian;
- Foster, Bryce;
- Ginzburg, Michael;
- Huntemann, Marcel;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Lindquist, Erika;
- Mukherjee, Supratim;
- Palaniappan, Krishnaveni
Publication type:
Article
Ecology and molecular targets of hypermutation in the global microbiome.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23402-7
By:
- Roux, Simon;
- Paul, Blair G.;
- Bagby, Sarah C.;
- Nayfach, Stephen;
- Allen, Michelle A.;
- Attwood, Graeme;
- Cavicchioli, Ricardo;
- Chistoserdova, Ludmila;
- Gruninger, Robert J.;
- Hallam, Steven J.;
- Hernandez, Maria E.;
- Hess, Matthias;
- Liu, Wen-Tso;
- McAllister, Tim A.;
- O'Malley, Michelle A.;
- Peng, Xuefeng;
- Rich, Virginia I.;
- Saleska, Scott R.;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society.
Published in:
Microbial Biotechnology, 2024, v. 17, n. 5, p. 1, doi. 10.1111/1751-7915.14456
By:
- Timmis, Kenneth;
- Hallsworth, John E.;
- McGenity, Terry J.;
- Armstrong, Rachel;
- Colom, María Francisca;
- Karahan, Zeynep Ceren;
- Chavarría, Max;
- Bernal, Patricia;
- Boyd, Eric S.;
- Ramos, Juan Luis;
- Kaltenpoth, Martin;
- Pruzzo, Carla;
- Clarke, Gerard;
- López‐Garcia, Purificación;
- Yakimov, Michail M.;
- Perlmutter, Jessamyn;
- Greening, Chris;
- Eloe‐Fadrosh, Emiley;
- Verstraete, Willy;
- Nunes, Olga C.
Publication type:
Article
CheckV assesses the quality and completeness of metagenome-assembled viral genomes.
Published in:
Nature Biotechnology, 2021, v. 39, n. 5, p. 578, doi. 10.1038/s41587-020-00774-7
By:
- Nayfach, Stephen;
- Camargo, Antonio Pedro;
- Schulz, Frederik;
- Eloe-Fadrosh, Emiley;
- Roux, Simon;
- Kyrpides, Nikos C.
Publication type:
Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2018, v. 36, n. 7, p. 660, doi. 10.1038/nbt0718-660a
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Published in:
Nature Biotechnology, 2018, v. 36, n. 4, p. 368, doi. 10.1038/nbt0418-368c
By:
- Mukherjee, Supratim;
- Seshadri, Rekha;
- Varghese, Neha J;
- Eloe-Fadrosh, Emiley A;
- Meier-Kolthoff, Jan P;
- Göker, Markus;
- Coates, R Cameron;
- Hadjithomas, Michalis;
- Pavlopoulos, Georgios A;
- Paez-Espino, David;
- Yoshikuni, Yasuo;
- Visel, Axel;
- Whitman, William B;
- Garrity, George M;
- Eisen, Jonathan A;
- Hugenholtz, Philip;
- Pati, Amrita;
- Ivanova, Natalia N;
- Woyke, Tanja;
- Klenk, Hans-Peter
Publication type:
Article
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.
Published in:
Nature Biotechnology, 2018, v. 36, n. 4, p. 359, doi. 10.1038/nbt.4110
By:
- Seshadri, Rekha;
- Leahy, Sinead C;
- Attwood, Graeme T;
- Teh, Koon Hoong;
- Lambie, Suzanne C;
- Cookson, Adrian L;
- Eloe-Fadrosh, Emiley A;
- Pavlopoulos, Georgios A;
- Hadjithomas, Michalis;
- Varghese, Neha J;
- Paez-Espino, David;
- Perry, Rechelle;
- Henderson, Gemma;
- Creevey, Christopher J;
- Terrapon, Nicolas;
- Lapebie, Pascal;
- Drula, Elodie;
- Lombard, Vincent;
- Rubin, Edward;
- Kyrpides, Nikos C
Publication type:
Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2018, v. 36, n. 2, p. 196, doi. 10.1038/nbt0218-196a
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2017, v. 35, n. 8, p. 725, doi. 10.1038/nbt.3893
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Published in:
Nature Biotechnology, 2017, v. 35, n. 7, p. 676, doi. 10.1038/nbt.3886
By:
- Mukherjee, Supratim;
- Seshadri, Rekha;
- Varghese, Neha J;
- Eloe-Fadrosh, Emiley A;
- Meier-Kolthoff, Jan P;
- Göker, Markus;
- Coates, R Cameron;
- Hadjithomas, Michalis;
- Pavlopoulos, Georgios A;
- Paez-Espino, David;
- Yoshikuni, Yasuo;
- Visel, Axel;
- Whitman, William B;
- Garrity, George M;
- Eisen, Jonathan A;
- Hugenholtz, Philip;
- Pati, Amrita;
- Ivanova, Natalia N;
- Woyke, Tanja;
- Klenk, Hans-Peter
Publication type:
Article
Aerosol Mycobacterium tuberculosis Infection Causes Rapid Loss of Diversity in Gut Microbiota.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0097048
By:
- Winglee, Kathryn;
- Eloe-Fadrosh, Emiley;
- Gupta, Shashank;
- Guo, Haidan;
- Fraser, Claire;
- Bishai, William
Publication type:
Article
Ecotype Diversity and Conversion in Photobacterium profundum Strains.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096953
By:
- Lauro, Federico M.;
- Eloe-Fadrosh, Emiley A.;
- Richter, Taylor K. S.;
- Vitulo, Nicola;
- Ferriera, Steven;
- Johnson, Justin H.;
- Bartlett, Douglas H.
Publication type:
Article
Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0064212
By:
- Seekatz, Anna M.;
- Panda, Aruna;
- Rasko, David A.;
- Toapanta, Franklin R.;
- Eloe-Fadrosh, Emiley A.;
- Khan, Abdul Q.;
- Liu, Zhenqiu;
- Shipley, Steven T.;
- DeTolla, Louis J.;
- Sztein, Marcelo B.;
- Fraser, Claire M.
Publication type:
Article
Impact of Oral Typhoid Vaccination on the Human Gut Microbiota and Correlations with S. Typhi-Specific Immunological Responses.
Published in:
PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0062026
By:
- Eloe-Fadrosh, Emiley A.;
- McArthur, Monica A.;
- Seekatz, Anna M.;
- Drabek, Elliott F.;
- Rasko, David A.;
- Sztein, Marcelo B.;
- Fraser, Claire M.
Publication type:
Article
In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay.
Published in:
Microbial Ecology, 2021, v. 81, n. 3, p. 601, doi. 10.1007/s00248-020-01621-7
By:
- Rasmussen, Anna N.;
- Damashek, Julian;
- Eloe-Fadrosh, Emiley A.;
- Francis, Christopher A.
Publication type:
Article
Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long‐term warming.
Published in:
Global Change Biology, 2023, v. 29, n. 6, p. 1574, doi. 10.1111/gcb.16544
By:
- Domeignoz‐Horta, Luiz A.;
- Pold, Grace;
- Erb, Hailey;
- Sebag, David;
- Verrecchia, Eric;
- Northen, Trent;
- Louie, Katherine;
- Eloe‐Fadrosh, Emiley;
- Pennacchio, Christa;
- Knorr, Melissa A.;
- Frey, Serita D.;
- Melillo, Jerry M.;
- DeAngelis, Kristen M.
Publication type:
Article
Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.
Published in:
Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7
By:
- Martínez-Hidalgo, Pilar;
- Humm, Ethan A.;
- Still, David W.;
- Shi, Baochen;
- Pellegrini, Matteo;
- de la Roca, Gabriela;
- Veliz, Esteban;
- Maymon, Maskit;
- Bru, Pierrick;
- Huntemann, Marcel;
- Clum, Alicia;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Shapiro, Nicole;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem.
Published in:
Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01666-z
By:
- Coclet, Clement;
- Sorensen, Patrick O.;
- Karaoz, Ulas;
- Wang, Shi;
- Brodie, Eoin L.;
- Eloe-Fadrosh, Emiley A.;
- Roux, Simon
Publication type:
Article
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.
Published in:
Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01254-7
By:
- Duncan, Anthony;
- Barry, Kerrie;
- Daum, Chris;
- Eloe-Fadrosh, Emiley;
- Roux, Simon;
- Schmidt, Katrin;
- Tringe, Susannah G.;
- Valentin, Klaus U.;
- Varghese, Neha;
- Salamov, Asaf;
- Grigoriev, Igor V.;
- Leggett, Richard M.;
- Moulton, Vincent;
- Mock, Thomas
Publication type:
Article
Ecological and genomic analyses of candidate phylum WPS‐2 bacteria in an unvegetated soil.
Published in:
Environmental Microbiology, 2020, v. 22, n. 8, p. 3143, doi. 10.1111/1462-2920.15054
By:
- Sheremet, Andriy;
- Jones, Gareth M.;
- Jarett, Jessica;
- Bowers, Robert M.;
- Bedard, Isaac;
- Culham, Cassandra;
- Eloe‐Fadrosh, Emiley A.;
- Ivanova, Natalia;
- Malmstrom, Rex R.;
- Grasby, Stephen E.;
- Woyke, Tanja;
- Dunfield, Peter F.
Publication type:
Article
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.
Published in:
Nature Communications, 2016, v. 7, n. 1, p. 10476, doi. 10.1038/ncomms10476
By:
- Eloe-Fadrosh, Emiley A.;
- Paez-Espino, David;
- Jarett, Jessica;
- Dunfield, Peter F.;
- Hedlund, Brian P.;
- Dekas, Anne E.;
- Grasby, Stephen E.;
- Brady, Allyson L.;
- Dong, Hailiang;
- Briggs, Brandon R.;
- Li, Wen-Jun;
- Goudeau, Danielle;
- Malmstrom, Rex;
- Pati, Amrita;
- Pett-Ridge, Jennifer;
- Rubin, Edward M.;
- Woyke, Tanja;
- Kyrpides, Nikos C.;
- Ivanova, Natalia N.
Publication type:
Article
Terabase-scale metagenome coassembly with MetaHipMer.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67416-5
By:
- Hofmeyr, Steven;
- Egan, Rob;
- Georganas, Evangelos;
- Copeland, Alex C.;
- Riley, Robert;
- Clum, Alicia;
- Eloe-Fadrosh, Emiley;
- Roux, Simon;
- Goltsman, Eugene;
- Buluç, Aydın;
- Rokhsar, Daniel;
- Oliker, Leonid;
- Yelick, Katherine
Publication type:
Article
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.7265
By:
- Trubl, Gareth;
- Roux, Simon;
- Solonenko, Natalie;
- Li, Yueh-Fen;
- Bolduc, Benjamin;
- Rodríguez-Ramos, Josué;
- Eloe-Fadrosh, Emiley A.;
- Rich, Virginia I.;
- Sullivan, Matthew B.
Publication type:
Article
Optimizing de novo genome assembly from PCR-amplified metagenomes.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.6902
By:
- Roux, Simon;
- Trubl, Gareth;
- Goudeau, Danielle;
- Nath, Nandita;
- Couradeau, Estelle;
- Ahlgren, Nathan A.;
- Yuanchao Zhan;
- Marsan, David;
- Feng Chen;
- Fuhrman, Jed A.;
- Northen, Trent R.;
- Sullivan, Matthew B.;
- Rich, Virginia I.;
- Malmstrom, Rex R.;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
Genomic variation and biogeography of Antarctic haloarchaea.
Published in:
Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0495-3
By:
- Tschitschko, Bernhard;
- Erdmann, Susanne;
- DeMaere, Matthew Z.;
- Roux, Simon;
- Panwar, Pratibha;
- Allen, Michelle A.;
- Williams, Timothy J.;
- Brazendale, Sarah;
- Hancock, Alyce M.;
- Eloe-Fadrosh, Emiley A.;
- Cavicchioli, Ricardo
Publication type:
Article
Towards a balanced view of the bacterial tree of life.
Published in:
Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0360-9
By:
- Schulz, Frederik;
- Eloe-Fadrosh, Emiley A.;
- Bowers, Robert M.;
- Jarett, Jessica;
- Nielsen, Torben;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Woyke, Tanja
Publication type:
Article
Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.583361
By:
- Palmer, Marike;
- Hedlund, Brian P.;
- Roux, Simon;
- Tsourkas, Philippos K.;
- Doss, Ryan K.;
- Stamereilers, Casey;
- Mehta, Astha;
- Dodsworth, Jeremy A.;
- Lodes, Michael;
- Monsma, Scott;
- Glavina del Rio, Tijana;
- Schoenfeld, Thomas W.;
- Eloe-Fadrosh, Emiley A.;
- Mead, David A.
Publication type:
Article
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D164, doi. 10.1093/nar/gkad964
By:
- Camargo, Antonio Pedro;
- Call, Lee;
- Roux, Simon;
- Nayfach, Stephen;
- Huntemann, Marcel;
- Palaniappan, Krishnaveni;
- Ratner, Anna;
- Chu, Ken;
- Mukherjeep, Supratim;
- Reddy, T B K;
- Chen, I-Min A;
- Ivanova, Natalia N;
- Eloe-Fadrosh, Emiley A;
- Woyke, Tanja;
- Baltrus, David A;
- Castañeda-Barba, Salvador;
- de la Cruz, Fernando;
- Funnell, Barbara E;
- Hall, James P J;
- Mukhopadhyay, Aindrila
Publication type:
Article
IMG/M data management and analysis system v.7: content updates and new features.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D723, doi. 10.1093/nar/gkac976
By:
- Chen, I-Min A;
- Chu, Ken;
- Palaniappan, Krishnaveni;
- Ratner, Anna;
- Huang, Jinghua;
- Huntemann, Marcel;
- Hajek, Patrick;
- Ritter, Stephan J;
- Webb, Cody;
- Wu, Dongying;
- Varghese, Neha J;
- Reddy, T B K;
- Mukherjee, Supratim;
- Ovchinnikova, Galina;
- Nolan, Matt;
- Seshadri, Rekha;
- Roux, Simon;
- Visel, Axel;
- Woyke, Tanja;
- Eloe-Fadrosh, Emiley A
Publication type:
Article
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D733, doi. 10.1093/nar/gkac1037
By:
- Camargo, Antonio Pedro;
- Nayfach, Stephen;
- Chen, I-Min A;
- Palaniappan, Krishnaveni;
- Ratner, Anna;
- Chu, Ken;
- Ritter, Stephan J;
- Reddy, T B K;
- Mukherjee, Supratim;
- Schulz, Frederik;
- Call, Lee;
- Neches, Russell Y;
- Woyke, Tanja;
- Ivanova, Natalia N;
- Eloe-Fadrosh, Emiley A;
- Kyrpides, Nikos C;
- Roux, Simon
Publication type:
Article
National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D828, doi. 10.1093/nar/gkab990
By:
- Eloe-Fadrosh, Emiley A;
- Ahmed, Faiza;
- Anubhav;
- Babinski, Michal;
- Baumes, Jeffrey;
- Borkum, Mark;
- Bramer, Lisa;
- Canon, Shane;
- Christianson, Danielle S;
- Corilo, Yuri E;
- Davenport, Karen W;
- Davis, Brandon;
- Drake, Meghan;
- Duncan, William D;
- Flynn, Mark C;
- Hays, David;
- Hu, Bin;
- Huntemann, Marcel;
- Kelliher, Julia;
- Lebedeva, Sofya
Publication type:
Article
Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community.
Published in:
Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00889-8
By:
- Panwar, Pratibha;
- Allen, Michelle A.;
- Williams, Timothy J.;
- Hancock, Alyce M.;
- Brazendale, Sarah;
- Bevington, James;
- Roux, Simon;
- Páez-Espino, David;
- Nayfach, Stephen;
- Berg, Maureen;
- Schulz, Frederik;
- Chen, I-Min A.;
- Huntemann, Marcel;
- Shapiro, Nicole;
- Kyrpides, Nikos C.;
- Woyke, Tanja;
- Eloe-Fadrosh, Emiley A.;
- Cavicchioli, Ricardo
Publication type:
Article
Diversity, evolution, and classification of virophages uncovered through global metagenomics.
Published in:
Microbiome, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40168-019-0768-5
By:
- Paez-Espino, David;
- Zhou, Jinglie;
- Roux, Simon;
- Nayfach, Stephen;
- Pavlopoulos, Georgios A.;
- Schulz, Frederik;
- McMahon, Katherine D.;
- Walsh, David;
- Woyke, Tanja;
- Ivanova, Natalia N.;
- Eloe-Fadrosh, Emiley A.;
- Tringe, Susannah G.;
- Kyrpides, Nikos C.
Publication type:
Article
Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti.
Published in:
Frontiers in Microbiology, 2020, v. 10, p. 1, doi. 10.3389/fmicb.2019.03044
By:
- Flores-Núñez, Víctor M.;
- Fonseca-García, Citlali;
- Desgarennes, Damaris;
- Eloe-Fadrosh, Emiley;
- Woyke, Tanja;
- Partida-Martínez, Laila P.
Publication type:
Article
Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures.
Published in:
Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01427
By:
- Thomas, Scott C.;
- Tamadonfar, Kevin O.;
- Seymour, Cale O.;
- Lai, Dengxun;
- Dodsworth, Jeremy A.;
- Murugapiran, Senthil K.;
- Eloe-Fadrosh, Emiley A.;
- Dijkstra, Paul;
- Hedlund, Brian P.
Publication type:
Article
Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH.
Published in:
Environmental Microbiology, 2023, v. 25, n. 9, p. 1644, doi. 10.1111/1462-2920.16375
By:
- Blum, Laura N.;
- Colman, Daniel R.;
- Eloe‐Fadrosh, Emiley A.;
- Kellom, Matthew;
- Boyd, Eric S.;
- Zhaxybayeva, Olga;
- Leavitt, William D.
Publication type:
Article

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