Works matching IS 20492618 AND DT 2019 AND VI 7 AND IP 1

Results: 159

The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities.

Published in:

Microbiome, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40168-019-0772-9

By:

Gohli, Jostein;
Bøifot, Kari Oline;
Moen, Line Victoria;
Pastuszek, Paulina;
Skogan, Gunnar;
Udekwu, Klas I.;
Dybwad, Marius

Publication type:

Article

Beneath the surface: community assembly and functions of the coral skeleton microbiome.

Published in:

Microbiome, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40168-019-0762-y

By:

Ricci, Francesco;
Rossetto Marcelino, Vanessa;
Blackall, Linda L.;
Kühl, Michael;
Medina, Mónica;
Verbruggen, Heroen

Publication type:

Article

Discordant transmission of bacteria and viruses from mothers to babies at birth.

Published in:

Microbiome, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40168-019-0766-7

By:

Maqsood, Rabia;
Rodgers, Rachel;
Rodriguez, Cynthia;
Handley, Scott A.;
Ndao, I. Malick;
Tarr, Phillip I.;
Warner, Barbara B.;
Lim, Efrem S.;
Holtz, Lori R.

Publication type:

Article

Applying indirect open-circuit calorimetry to study energy expenditure in gnotobiotic mice harboring different human gut microbial communities.

Published in:

Microbiome, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40168-019-0769-4

By:

Halatchev, Ilia G.;
O'Donnell, David;
Hibberd, Matthew C.;
Gordon, Jeffrey I.

Publication type:

Article

Diversity, evolution, and classification of virophages uncovered through global metagenomics.

Published in:

Microbiome, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40168-019-0768-5

By:

Paez-Espino, David;
Zhou, Jinglie;
Roux, Simon;
Nayfach, Stephen;
Pavlopoulos, Georgios A.;
Schulz, Frederik;
McMahon, Katherine D.;
Walsh, David;
Woyke, Tanja;
Ivanova, Natalia N.;
Eloe-Fadrosh, Emiley A.;
Tringe, Susannah G.;
Kyrpides, Nikos C.

Publication type:

Article

Impacts of florfenicol on the microbiota landscape and resistome as revealed by metagenomic analysis.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0773-8

By:

Zeng, Qifan;
Liao, Chao;
Terhune, Jeffery;
Wang, Luxin

Publication type:

Article

Advancing functional and translational microbiome research using meta-omics approaches.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0767-6

By:

Zhang, Xu;
Li, Leyuan;
Butcher, James;
Stintzi, Alain;
Figeys, Daniel

Publication type:

Article

Molecular biogeography of planktonic and benthic diatoms in the Yangtze River.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0771-x

By:

Wang, Jiawen;
Liu, Qingxiang;
Zhao, Xianfu;
Borthwick, Alistair G. L.;
Liu, Yuxin;
Chen, Qian;
Ni, Jinren

Publication type:

Article

Niche differentiation rather than biogeography shapes the diversity and composition of microbiome of Cycas panzhihuaensis.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0770-y

By:

Zheng, Ying;
Gong, Xun

Publication type:

Article

Ochratoxin A induces liver inflammation: involvement of intestinal microbiota.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0761-z

By:

Wang, Wence;
Zhai, Shuangshuang;
Xia, Yaoyao;
Wang, Hao;
Ruan, Dong;
Zhou, Ting;
Zhu, Yongwen;
Zhang, Hongfu;
Zhang, Minhong;
Ye, Hui;
Ren, Wenkai;
Yang, Lin

Publication type:

Article

Gut microbiota from NLRP3-deficient mice ameliorates depressive-like behaviors by regulating astrocyte dysfunction via circHIPK2.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0733-3

By:

Zhang, Yuan;
Huang, Rongrong;
Cheng, Mengjing;
Wang, Lirui;
Chao, Jie;
Li, Junxu;
Zheng, Peng;
Xie, Peng;
Zhang, Zhijun;
Yao, Honghong

Publication type:

Article

Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0731-5

By:

Cabello-Yeves, Pedro J.;
Rodriguez-Valera, Francisco

Publication type:

Article

Compositional homogeneity in the pathobiome of a new, slow-spreading coral disease.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0759-6

By:

Sweet, Michael;
Burian, Alfred;
Fifer, James;
Bulling, Mark;
Elliott, David;
Raymundo, Laurie

Publication type:

Article

Correction to: Competitive interaction with keystone taxa induced negative priming under biochar amendments.

Published in:

2019

By:

Chen, Lijun;
Jiang, Yuji;
Liang, Chao;
Luo, Yu;
Xu, Qinsong;
Han, Cheng;
Zhao, Qiguo;
Sun, Bo

Publication type:

Correction Notice

An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0729-z

By:

Li, Chenhao;
Chng, Kern Rei;
Kwah, Junmei Samantha;
Av-Shalom, Tamar V.;
Tucker-Kellogg, Lisa;
Nagarajan, Niranjan

Publication type:

Article

Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle.

Published in:

2019

By:

Auffret, Marc D.;
Dewhurst, Richard J.;
Duthie, Carol-Anne;
Rooke, John A.;
Wallace, R. John;
Freeman, Tom C.;
Stewart, Robert;
Watson, Mick;
Roehe, Rainer

Publication type:

Correction Notice

Correction to: Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons.

Published in:

2019

By:

Chen, Weidong;
Ren, Kexin;
Isabwe, Alain;
Chen, Huihuang;
Liu, Min;
Yang, Jun

Publication type:

Correction Notice

Microbiome of vineyard soils is shaped by geography and management.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0758-7

By:

Coller, Emanuela;
Cestaro, Alessandro;
Zanzotti, Roberto;
Bertoldi, Daniela;
Pindo, Massimo;
Larger, Simone;
Albanese, Davide;
Mescalchin, Enzo;
Donati, Claudio

Publication type:

Article

Microbial communities of the house fly Musca domestica vary with geographical location and habitat.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0748-9

By:

Park, Rahel;
Dzialo, Maria C.;
Spaepen, Stijn;
Nsabimana, Donat;
Gielens, Kim;
Devriese, Herman;
Crauwels, Sam;
Tito, Raul Y.;
Raes, Jeroen;
Lievens, Bart;
Verstrepen, Kevin J.

Publication type:

Article

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0756-9

By:

Schmidt, Jennifer E.;
Kent, Angela D.;
Brisson, Vanessa L.;
Gaudin, Amélie C. M.

Publication type:

Article

Antibiotic-modulated microbiome suppresses lethal inflammation and prolongs lifespan in Treg-deficient mice.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0751-1

By:

He, Baokun;
Liu, Yuying;
Hoang, Thomas K.;
Tian, Xiangjun;
Taylor, Christopher M.;
Luo, Meng;
Tran, Dat Q.;
Tatevian, Nina;
Rhoads, J. Marc

Publication type:

Article

Suppressed N fixation and diazotrophs after four decades of fertilization.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0757-8

By:

Fan, Kunkun;
Delgado-Baquerizo, Manuel;
Guo, Xisheng;
Wang, Daozhong;
Wu, Yanying;
Zhu, Mo;
Yu, Wei;
Yao, Huaiying;
Zhu, Yong-guan;
Chu, Haiyan

Publication type:

Article

Quantifying the contribution of microbial immigration in engineered water systems.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0760-0

By:

Mei, Ran;
Liu, Wen-Tso

Publication type:

Article

A conceptual framework for the phylogenetically constrained assembly of microbial communities.

Published in:

2019

By:

Aguirre de Cárcer, Daniel

Publication type:

Letter

The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0753-z

By:

Wagner, Josef;
Harrison, Ewan M.;
Martinez Del Pero, Marcos;
Blane, Beth;
Mayer, Gert;
Leierer, Johannes;
Gopaluni, Seerapani;
Holmes, Mark A.;
Parkhill, Julian;
Peacock, Sharon J.;
Jayne, David R. W.;
Kronbichler, Andreas

Publication type:

Article

Microbiota analysis optimization for human bronchoalveolar lavage fluid.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0755-x

By:

Schneeberger, Pierre H. H.;
Prescod, Janice;
Levy, Liran;
Hwang, David;
Martinu, Tereza;
Coburn, Bryan

Publication type:

Article

Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0750-2

By:

Chen, Shuaimin;
Waghmode, Tatoba R.;
Sun, Ruibo;
Kuramae, Eiko E.;
Hu, Chunsheng;
Liu, Binbin

Publication type:

Article

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0749-8

By:

Chen, Weidong;
Ren, Kexin;
Isabwe, Alain;
Chen, Huihuang;
Liu, Min;
Yang, Jun

Publication type:

Article

Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0752-0

By:

Kavagutti, Vinicius S.;
Andrei, Adrian-Ştefan;
Mehrshad, Maliheh;
Salcher, Michaela M.;
Ghai, Rohit

Publication type:

Article

Novel facultative Methylocella strains are active methane consumers at terrestrial natural gas seeps.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0741-3

By:

Farhan Ul Haque, Muhammad;
Crombie, Andrew T.;
Murrell, J. Colin

Publication type:

Article

The occurrence of Listeria monocytogenes is associated with built environment microbiota in three tree fruit processing facilities.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0726-2

By:

Tan, Xiaoqing;
Chung, Taejung;
Chen, Yi;
Macarisin, Dumitru;
LaBorde, Luke;
Kovac, Jasna

Publication type:

Article

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0727-1

By:

Pérez-Jaramillo, Juan E.;
de Hollander, Mattias;
Ramírez, Camilo A.;
Mendes, Rodrigo;
Raaijmakers, Jos M.;
Carrión, Víctor J.

Publication type:

Article

Commensal-derived metabolites govern Vibrio cholerae pathogenesis in host intestine.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0746-y

By:

You, Jin Sun;
Yong, Ji Hyun;
Kim, Gwang Hee;
Moon, Sungmin;
Nam, Ki Taek;
Ryu, Ji Hwan;
Yoon, Mi Young;
Yoon, Sang Sun

Publication type:

Article

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0743-1

By:

Rausch, Philipp;
Rühlemann, Malte;
Hermes, Britt M.;
Doms, Shauni;
Dagan, Tal;
Dierking, Katja;
Domin, Hanna;
Fraune, Sebastian;
von Frieling, Jakob;
Hentschel, Ute;
Heinsen, Femke-Anouska;
Höppner, Marc;
Jahn, Martin T.;
Jaspers, Cornelia;
Kissoyan, Kohar Annie B.;
Langfeldt, Daniela;
Rehman, Ateequr;
Reusch, Thorsten B. H.;
Roeder, Thomas;
Schmitz, Ruth A.

Publication type:

Article

A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0747-x

By:

Scepanovic, Petar;
Hodel, Flavia;
Mondot, Stanislas;
Partula, Valentin;
Byrd, Allyson;
Hammer, Christian;
Alanio, Cécile;
Bergstedt, Jacob;
Patin, Etienne;
Touvier, Mathilde;
Lantz, Olivier;
Albert, Matthew L.;
Duffy, Darragh;
Quintana-Murci, Lluis;
Fellay, Jacques

Publication type:

Article

Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0745-z

By:

Ingham, Anna Cäcilia;
Kielsen, Katrine;
Cilieborg, Malene Skovsted;
Lund, Ole;
Holmes, Susan;
Aarestrup, Frank M.;
Müller, Klaus Gottlob;
Pamp, Sünje Johanna

Publication type:

Article

Challenges in the construction of knowledge bases for human microbiome-disease associations.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0742-2

By:

Badal, Varsha Dave;
Wright, Dustin;
Katsis, Yannis;
Kim, Ho-Cheol;
Swafford, Austin D.;
Knight, Rob;
Hsu, Chun-Nan

Publication type:

Article

The fungicide azoxystrobin promotes freshwater cyanobacterial dominance through altering competition.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0744-0

By:

Lu, Tao;
Zhang, Qi;
Lavoie, Michel;
Zhu, Youchao;
Ye, Yizhi;
Yang, Jun;
Paerl, Hans W.;
Qian, Haifeng;
Zhu, Yong-Guan

Publication type:

Article

Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0738-y

By:

Randall, David William;
Kieswich, Julius;
Swann, Jonathan;
McCafferty, Kieran;
Thiemermann, Christoph;
Curtis, Michael;
Hoyles, Lesley;
Yaqoob, Muhammed Magdi

Publication type:

Article

Diet-induced remission in chronic enteropathy is associated with altered microbial community structure and synthesis of secondary bile acids.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0740-4

By:

Wang, Shuai;
Martins, Rene;
Sullivan, Megan C.;
Friedman, Elliot S.;
Misic, Ana M.;
El-Fahmawi, Ayah;
De Martinis, Elaine Cristina Pereira;
O'Brien, Kevin;
Chen, Ying;
Bradley, Charles;
Zhang, Grace;
Berry, Alexander S. F.;
Hunter, Christopher A.;
Baldassano, Robert N.;
Rondeau, Mark P.;
Beiting, Daniel P.

Publication type:

Article

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0736-0

By:

Kerdraon, Lydie;
Barret, Matthieu;
Laval, Valérie;
Suffert, Frédéric

Publication type:

Article

Testing the relationship between microbiome composition and flux of carbon and nutrients in Caribbean coral reef sponges.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0739-x

By:

Gantt, Shelby E.;
McMurray, Steven E.;
Stubler, Amber D.;
Finelli, Christopher M.;
Pawlik, Joseph R.;
Erwin, Patrick M.

Publication type:

Article

Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0735-1

By:

Gupta, Suraj;
Arango-Argoty, Gustavo;
Zhang, Liqing;
Pruden, Amy;
Vikesland, Peter

Publication type:

Article

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0734-2

By:

Shi, Chenyan;
Beller, Leen;
Deboutte, Ward;
Yinda, Kwe Claude;
Delang, Leen;
Vega-Rúa, Anubis;
Failloux, Anna-Bella;
Matthijnssens, Jelle

Publication type:

Article

Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0730-6

By:

Wang, Yulin;
Niu, Qigui;
Zhang, Xu;
Liu, Lei;
Wang, Yubo;
Chen, Yiqiang;
Negi, Mishty;
Figeys, Daniel;
Li, Yu-You;
Zhang, Tong

Publication type:

Article

Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0737-z

By:

Suzuki, Yoshihiko;
Nishijima, Suguru;
Furuta, Yoshikazu;
Yoshimura, Jun;
Suda, Wataru;
Oshima, Kenshiro;
Hattori, Masahira;
Morishita, Shinichi

Publication type:

Article

Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0724-4

By:

Jiang, Peng;
Green, Stefan J.;
Chlipala, George E.;
Turek, Fred W.;
Vitaterna, Martha Hotz

Publication type:

Article

Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0728-0

By:

Kusstatscher, Peter;
Zachow, Christin;
Harms, Karsten;
Maier, Johann;
Eigner, Herbert;
Berg, Gabriele;
Cernava, Tomislav

Publication type:

Article

Baseline microbiota composition modulates antibiotic-mediated effects on the gut microbiota and host.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0725-3

By:

Lavelle, Aonghus;
Hoffmann, Thomas Walter;
Pham, Hang-Phuong;
Langella, Philippe;
Guédon, Eric;
Sokol, Harry

Publication type:

Article

The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0716-4

By:

Boelsen, Laura K.;
Dunne, Eileen M.;
Mika, Moana;
Eggers, Stefanie;
Nguyen, Cattram D.;
Ratu, F. Tupou;
Russell, Fiona M.;
Mulholland, E. Kim;
Hilty, Markus;
Satzke, Catherine

Publication type:

Article