Works matching IS 20492618 AND DT 2015 AND VI 3 AND IP 1

Results: 49

Ecology of bacteria in the human gastrointestinal tract--identification of keystone and foundation taxa.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0107-4

By:

Trosvik, Pål;
de Muinck, Eric Jacques

Publication type:

Article

Phylogenetic approaches to microbial community classification.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0114-5

By:

Jie Ning;
Beiko, Robert G.

Publication type:

Article

An accurate and efficient experimental approach for characterization of the complex oral microbiota.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0110-9

By:

Wei Zheng;
Tsompana, Maria;
Ruscitto, Angela;
Sharma, Ashu;
Genco, Robert;
Yijun Sun;
Buck, Michael J.

Publication type:

Article

Passive dust collectors for assessing airborne microbial material.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0112-7

By:

Adams, Rachel I.;
Yilin Tian;
Taylor, John W.;
Bruns, Thomas D.;
Hyvärinen, Anne;
Täubel, Martin

Publication type:

Article

Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0105-6

By:

Franzén, Oscar;
Jianzhong Hu;
Xiuliang Bao;
Itzkowitz, Steven H.;
Peter, Inga;
Bashir, Ali

Publication type:

Article

Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs).

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0106-5

By:

Auchtung, Jennifer M.;
Robinson, Catherine D.;
Britton, Robert A.

Publication type:

Article

The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0104-7

By:

Praveen, Paurush;
Jordan, Ferenc;
Priami, Corrado;
Morine, Melissa J.

Publication type:

Article

Intestinal microbial communities associated with acute enteric infections and disease recovery.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0109-2

By:

Singh, Pallavi;
Teal, Tracy K.;
Marsh, Terence L.;
Tiedje, James M.;
Mosci, Rebekah;
Jernigan, Katherine;
Zell, Angela;
Newton, Duane W.;
Salimnia, Hossein;
Lephart, Paul;
Sundin, Daniel;
Khalife, Walid;
Britton, Robert A.;
Rudrik, James T.;
Manning, Shannon D.

Publication type:

Article

Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0103-8

By:

Fricke, W. Florian;
Yang Song;
An-Jiang Wang;
Smith, Allen;
Grinchuk, Viktoriya;
Chenlin Pei;
Bing Ma;
Nonghua Lu;
Urban Jr., Joseph F.;
Shea-Donohue, Terez;
Aiping Zhao

Publication type:

Article

Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0099-0

By:

Satinsky, Brandon M.;
Fortunato, Caroline S.;
Doherty, Mary;
Smith, Christa B.;
Sharma, Shalabh;
Ward, Nicholas D.;
Krusche, Alex V.;
Yager, Patricia L.;
Richey, Jeffrey E.;
Moran, Mary Ann;
Crump, Byron C.

Publication type:

Article

The effect of dietary resistant starch type 2 on the microbiota and markers of gut inflammation in rural Malawi children.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0102-9

By:

Ordiz, M. Isabel;
May, Thaddaeus D.;
Mihindukulasuriya, Kathie;
Martin, John;
Crowley, Jan;
Tarr, Phillip I.;
Ryan, Kelsey;
Mortimer, Elissa;
Gopalsamy, Geetha;
Maleta, Ken;
Mitreva, Makedonka;
Young, Graeme;
Manary, Mark J.

Publication type:

Article

In silico analyses of metagenomes from human atherosclerotic plaque samples.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0100-y

By:

Mitra, Suparna;
Drautz-Moses, Daniela I.;
Alhede, Morten;
Maw, Myat T.;
Yang Liu;
Purbojati, Rikky W.;
Yap, Zhei H.;
Kushwaha, Kavita K.;
Gheorghe, Alexandra G.;
Bjarnsholt, Thomas;
Hansen, Gorm M.;
Sillesen, Henrik H.;
Hougen, Hans P.;
Hansen, Peter R.;
Liang Yang;
Tolker-Nielsen, Tim;
Schuster, Stephan C.;
Givskov, Michael

Publication type:

Article

Structure and function of the healthy pre-adolescent pediatric gut microbiome.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0101-x

By:

Hollister, Emily B.;
Riehle, Kevin;
Luna, Ruth Ann;
Weidler, Erica M.;
Rubio-Gonzales, Michelle;
Mistretta, Toni-Ann;
Raza, Sabeen;
Doddapaneni, Harsha V.;
Metcalf, Ginger A.;
Muzny, Donna M.;
Gibbs, Richard A.;
Petrosino, Joseph F.;
Shulman, Robert J.;
Versalovic, James

Publication type:

Article

Humanized microbiota mice as a model of recurrent Clostridium difficile disease.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0097-2

By:

Collins, James;
Auchtung, Jennifer M.;
Schaefer, Laura;
Eaton, Kathryn A.;
Britton, Robert A.

Publication type:

Article

Xander: employing a novel method for efficient gene-targeted metagenomic assembly.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0093-6

By:

Qiong Wang;
Fish, Jordan A.;
Gilman, Mariah;
Yanni Sun;
Brown, C. Titus;
Tiedje, James M.;
Cole, James R.

Publication type:

Article

Collection media and delayed freezing effects on microbial composition of human stool.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0092-7

By:

Flores, Roberto;
Jianxin Shi;
Guoqin Yu;
Bing Ma;
Ravel, Jacques;
Goedert, James J.;
Sinha, Rashmi

Publication type:

Article

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0081-x

By:

Yan He;
Caporaso, J. Gregory;
Xiao-Tao Jiang;
Hua-Fang Sheng;
Susan M. Huse;
Rideout, Jai Ram;
Edgar, Robert C.;
Kopylova, Evguenia;
Walters, William A.;
Knight, Rob;
Hong-Wei Zhou

Publication type:

Article

Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.

Published in:: Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0098-1
Publication type:: Article

Amplicon sequencing for the quantification of spoilage microbiota in complex foods including bacterial spores.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0096-3

By:

de Boer, Paulo;
Caspers, Martien;
Sanders, Jan-Willem;
Kemperman, Robèr;
Wijman, Janneke;
Lommerse, Gijs;
Roeselers, Guus;
Montijn, Roy;
Abee, Tjakko;
Kort, Remco

Publication type:

Article

Erratum: Gut resistome development in healthy twin pairs in the first year of life.

Published in:: Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0095-4
Publication type:: Article

The vocabulary of microbiome research: a proposal.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0094-5

By:

Marchesi, Julian R.;
Ravel, Jacques

Publication type:

Article

Diet shapes the gut microbiome of pigs during nursing and weaning.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0091-8

By:

Frese, Steven A.;
Parker, Kent;
Chris Calvert, C.;
Mills, David A.

Publication type:

Article

Gut resistome development in healthy twin pairs in the first year of life.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0090-9

By:

Moore, Aimee M.;
Ahmadi, Sara;
Patel, Sanket;
Gibson, Molly K.;
Wang, Bin;
Ndao, I. Malick;
Deych, Elena;
Shannon, William;
Tarr, Phillip I.;
Warner, Barbara B.;
Dantas, Gautam

Publication type:

Article

Gut resistome development in healthy twin pairs in the first year of life.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0090-9

By:

Moore, Aimee M.;
Ahmadi, Sara;
Patel, Sanket;
Gibson, Molly K.;
Bin Wang;
Ndao, Malick I.;
Deych, Elena;
Shannon, William;
Tarr, Phillip I.;
Warner, Barbara B.;
Dantas, Gautam

Publication type:

Article

Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0089-2

By:

Gough, Ethan K.;
Stephens, David A.;
Moodie, Erica E. M.;
Prendergast, Andrew J.;
Stoltzfus, Rebecca J.;
Humphrey, Jean H.;
Manges, Amee R.

Publication type:

Article

Athletic equipment microbiota are shaped by interactions with human skin.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0088-3

By:

Wood, Mariah;
Gibbons, Sean M.;
Lax, Simon;
Eshoo-Anton, Tifani W.;
Owens, Sarah M.;
Kennedy, Suzanne;
Gilbert, Jack A.;
Hampton-Marcell, Jarrad T.

Publication type:

Article

16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0087-4

By:

Walker, Alan W.;
Martin, Jennifer C.;
Scott, Paul;
Parkhill, Julian;
Flint, Harry J.;
Scott, Karen P.

Publication type:

Article

Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0086-5

By:

Lam, Kathy N.;
Charles, Trevor C.

Publication type:

Article

Inflammation-associated microbiota in pediatric eosinophilic esophagitis.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0085-6

By:

Benitez, Alain J.;
Hoffmann, Christian;
Muir, Amanda B.;
Dods, Kara K.;
Spergel, Jonathan M.;
Bushman, Frederic D.;
Mei-Lun Wang

Publication type:

Article

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0081-x

By:

Yan He;
Caporaso, J. Gregory;
Xiao-Tao Jiang;
Hua-Fang Sheng;
Huse, Susan M.;
Rideout, Jai Ram;
Edgar, Robert C.;
Kopylova, Evguenia;
Walters, William A.;
Knight, Rob;
Hong-Wei Zhou

Publication type:

Article

Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0084-7

By:

Lilja, Helene Engstrand;
Wefer, Hugo;
Nyström, Niklas;
Finkel, Yigael;
Engstrand, Lars

Publication type:

Article

Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0083-8

By:

Jervis-Bardy, Jake;
Leong, Lex E. X.;
Marri, Shashikanth;
Smith, Renee J.;
Choo, Jocelyn M.;
Smith-Vaughan, Heidi C.;
Nosworthy, Elizabeth;
Morris, Peter S.;
O'Leary, Stephen;
Rogers, Geraint B.;
Marsh, Robyn L.

Publication type:

Article

Forensic analysis of the microbiome of phones and shoes.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0082-9

By:

Lax, Simon;
Hampton-Marcell, Jarrad T.;
Gibbons, Sean M.;
Colares, Geórgia Barguil;
Smith, Daniel;
Eisen, Jonathan A.;
Gilbert, Jack A.

Publication type:

Article

Cross-fostering immediately after birth induces a permanent microbiota shift that is shaped by the nursing mother.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0080-y

By:

G.Daft, Joseph;
Ptacek, Travis;
Kumar, Ranjit;
Morrow, Casey;
G.Lorenz, Robin

Publication type:

Article

Xylo-oligosaccharides and virginiamycin differentially modulate gut microbial composition in chickens.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0079-4

By:

Pourabedin, Mohsen;
Leluo Guan;
Xin Zhao

Publication type:

Article

Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0078-5

By:

Umu, Özgün C. O.;
Frank, Jeremy A.;
Fangel, Jonatan U.;
Oostindjer, Marije;
Da Silva, Carol Souza;
Bolhuis, Elizabeth J.;
Bosch, Guido;
Willats, William G. T.;
Pope, Phillip B.;
Diep, Dzung B.

Publication type:

Article

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0077-6

By:

Baker, Brett J.;
Lazar, Cassandre Sara;
Teske, Andreas P.;
Dick, Gregory J.

Publication type:

Article

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0074-9

By:

Carmody, Lisa A.;
Jiangchao Zhao;
Kalikin, Linda M.;
Bar, William Le;
Simon, Richard H.;
Venkataraman, Arvind;
Schmidt, Thomas M.;
Abdo, Zaid;
Schloss, Patrick D.;
LiPuma, John J.

Publication type:

Article

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0071-z

By:

Lewis, Zachery T.;
Totten, Sarah M.;
Smilowitz, Jennifer T.;
Popovic, Mina;
Parker, Evan;
Lemay, Danielle G.;
Van Tassell, Maxwell L.;
Miller, Michael J.;
Yong-Su Jin;
Bruce German, J.;
Lebrilla, Carlito B.;
Mills, David A.

Publication type:

Article

Being human is a gut feeling.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0076-7

By:

Hutter, Thiago;
Gimbert, Carine;
Bouchard, Frédéric;
Lapointe, François-Joseph

Publication type:

Article

Bacterial diversity and Clostridia abundance decrease with increasing severity of necrotizing enterocolitis.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0075-8

By:

McMurtry, Valarie E.;
Gupta, Raegan W.;
Tran, Lynn;
Blanchard IV, Eugene E.;
Penn, Duna;
Taylor, Christopher M.;
Ferris, Michael J.

Publication type:

Article

BioMiCo: a supervised Bayesian model for inference of microbial community structure.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0073-x

By:

Shafiei, Mahdi;
Dunn, Katherine A.;
Boon, Eva;
MacDonald, Shelley M.;
Walsh, David A.;
Hong Gu;
Bielawski, Joseph P.

Publication type:

Article

16S gut community of the Cameron County Hispanic Cohort.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0072-y

By:

Ross, Matthew C.;
Muzny, Donna M.;
McCormick, Joseph B.;
Gibbs, Richard A.;
Fisher-Hoch, Susan P.;
Petrosino, Joseph F.

Publication type:

Article

Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0070-0

By:

Weingarden, Alexa;
González, Antonio;
Vázquez-Baeza, Yoshiki;
Weiss, Sophie;
Humphry, Gregory;
Berg-Lyons, Donna;
Knights, Dan;
Unno, Tatsuya;
Bobr, Aleh;
Kang, Johnthomas;
Khoruts, Alexander;
Knight, Rob;
Sadowsky, Michael J.

Publication type:

Article

Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0069-6

By:

Narrowe, Adrienne B.;
Albuthi-Lantz, Munira;
Smith, Erin P.;
Bower, Kimberly J.;
Roane, Timberley M.;
Vajda, Alan M.;
Miller, Christopher S.

Publication type:

Article

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0067-8

By:

Rahman, Nurdyana Abdul;
Parks, Donovan H.;
Willner, Dana L.;
Engelbrektson, Anna L.;
Goffredi, Shana K.;
Warnecke, Falk;
Scheffrahn, Rudolf H.;
Hugenholtz, Philip

Publication type:

Article

Reviewer acknowledgment 2014.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0068-7

By:

Ravel, Jacques;
Eric Wommack, K.

Publication type:

Article

Mapping axillary microbiota responsible for body odours using a culture-independent approach.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-014-0064-3

By:

Troccaz, Myriam;
Gaïa, Nadia;
Beccucci, Sabine;
Schrenzel, Jacques;
Cayeux, Isabelle;
Starkenmann, Christian;
Lazarevic, Vladimir

Publication type:

Article

The shared microbiota of humans and companion animals as evaluated from Staphylococcus carriage sites.

Published in:

Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-014-0052-7

By:

Misic, Ana M.;
Davis, Meghan F.;
Tyldsley, Amanda S.;
Hodkinson, Brendan P.;
Tolomeo, Pam;
Baofeng Hu;
Nachamkin, Irving;
Lautenbach, Ebbing;
Morris, Daniel O.;
Grice, Elizabeth A.

Publication type:

Article