Works matching IS 20411480 AND DT 2022 AND VI 13

Results: 28

We are not ready yet: limitations of state-of-the-art disease named entity recognizers.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00280-6
By:
- Kühnel, Lisa;
- Fluck, Juliane
Publication type:
Article
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00279-z
By:
- He, Yongqun;
- Yu, Hong;
- Huffman, Anthony;
- Lin, Asiyah Yu;
- Natale, Darren A.;
- Beverley, John;
- Zheng, Ling;
- Perl, Yehoshua;
- Wang, Zhigang;
- Liu, Yingtong;
- Ong, Edison;
- Wang, Yang;
- Huang, Philip;
- Tran, Long;
- Du, Jinyang;
- Shah, Zalan;
- Shah, Easheta;
- Desai, Roshan;
- Huang, Hsin-hui;
- Tian, Yujia
Publication type:
Article
Alignment of vaccine codes using an ontology of vaccine descriptions.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00278-0
By:
- Becker, Benedikt FH;
- Kors, Jan A;
- van Mulligen, Erik M;
- Sturkenboom, Miriam CJM
Publication type:
Article
Alignment of vaccine codes using an ontology of vaccine descriptions.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, p. 1, doi. 10.1186/s13326-022-00278-0
By:
- Becker, Benedikt FH;
- Kors, Jan A;
- van Mulligen, Erik M;
- Sturkenboom, Miriam CJM
Publication type:
Article
Pathling: analytics on FHIR.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00277-1
By:
- Grimes, John;
- Szul, Piotr;
- Metke-Jimenez, Alejandro;
- Lawley, Michael;
- Loi, Kylynn
Publication type:
Article
Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00276-2
By:
- Manuel, Warren;
- Abeysinghe, Rashmie;
- He, Yongqun;
- Tao, Cui;
- Cui, Licong
Publication type:
Article
DCSO: towards an ontology for machine-actionable data management plans.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00274-4
By:
- Cardoso, João;
- Castro, Leyla J.;
- Ekaputra, Fajar J.;
- Jacquemot, Marie C.;
- Suchánek, Marek;
- Miksa, Tomasz;
- Borbinha, José
Publication type:
Article
Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.
Published in:
2022
By:
- Binkheder, Samar;
- Wu, Heng-Yi;
- Quinney, Sara K.;
- Zhang, Shijun;
- Zitu, Md. Muntasir;
- Chiang, Chien-Wei;
- Wang, Lei;
- Jones, Josette;
- Li, Lang
Publication type:
Correction Notice
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00272-6
By:
- Binkheder, Samar;
- Wu, Heng-Yi;
- Quinney, Sara K.;
- Zhang, Shijun;
- Zitu, Md. Muntasir;
- Chiang, Chien‐Wei;
- Wang, Lei;
- Jones, Josette;
- Li, Lang
Publication type:
Article
Performance assessment of ontology matching systems for FAIR data.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00273-5
By:
- van Damme, Philip;
- Fernández-Breis, Jesualdo Tomás;
- Benis, Nirupama;
- Miñarro-Gimenez, Jose Antonio;
- de Keizer, Nicolette F.;
- Cornet, Ronald
Publication type:
Article
Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00268-2
By:
- Vogt, Lars;
- Mikó, István;
- Bartolomaeus, Thomas
Publication type:
Article
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00272-6
By:
- Binkheder, Samar;
- Wu, Heng-Yi;
- Quinney, Sara K.;
- Zhang, Shijun;
- Zitu, Md. Muntasir;
- Chiang, Chien‐Wei;
- Wang, Lei;
- Jones, Josette;
- Li, Lang
Publication type:
Article
Synthesizing evidence from clinical trials with dynamic interactive argument trees.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00270-8
By:
- Sanchez-Graillet, Olivia;
- Witte, Christian;
- Grimm, Frank;
- Grautoff, Steffen;
- Ell, Basil;
- Cimiano, Philipp
Publication type:
Article
Exploiting document graphs for inter sentence relation extraction.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00267-3
By:
- Le, Hoang-Quynh;
- Can, Duy-Cat;
- Collier, Nigel
Publication type:
Article
An annotated corpus of clinical trial publications supporting schema-based relational information extraction.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00271-7
By:
- Sanchez-Graillet, Olivia;
- Witte, Christian;
- Grimm, Frank;
- Cimiano, Philipp
Publication type:
Article
SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00269-1
By:
- Oliveira, Lucas Emanuel Silva e;
- Peters, Ana Carolina;
- da Silva, Adalniza Moura Pucca;
- Gebeluca, Caroline Pilatti;
- Gumiel, Yohan Bonescki;
- Cintho, Lilian Mie Mukai;
- Carvalho, Deborah Ribeiro;
- Al Hasan, Sadid;
- Moro, Claudia Maria Cabral
Publication type:
Article
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00263-7
By:
- Queralt-Rosinach, Núria;
- Kaliyaperumal, Rajaram;
- Bernabé, César H.;
- Long, Qinqin;
- Joosten, Simone A.;
- van der Wijk, Henk Jan;
- Flikkenschild, Erik L.A.;
- Burger, Kees;
- Jacobsen, Annika;
- Mons, Barend;
- Roos, Marco
Publication type:
Article
A multipurpose TNM stage ontology for cancer registries.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00260-w
By:
- Nicholson, Nicholas Charles;
- Giusti, Francesco;
- Bettio, Manola;
- Carvalho, Raquel Negrao;
- Dimitrova, Nadya;
- Dyba, Tadeusz;
- Flego, Manuela;
- Neamtiu, Luciana;
- Randi, Giorgia;
- Martos, Carmen
Publication type:
Article
Defining health data elements under the HL7 development framework for metadata management.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00265-5
By:
- Yang, Zhe;
- Jiang, Kun;
- Lou, Miaomiao;
- Gong, Yang;
- Zhang, Lili;
- Liu, Jing;
- Bao, Xinyu;
- Liu, Danhong;
- Yang, Peng
Publication type:
Article
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00264-6
By:
- Kaliyaperumal, Rajaram;
- Wilkinson, Mark D.;
- Moreno, Pablo Alarcón;
- Benis, Nirupama;
- Cornet, Ronald;
- dos Santos Vieira, Bruna;
- Dumontier, Michel;
- Bernabé, César Henrique;
- Jacobsen, Annika;
- Le Cornec, Clémence M. A.;
- Godoy, Mario Prieto;
- Queralt-Rosinach, Núria;
- Schultze Kool, Leo J.;
- Swertz, Morris A.;
- van Damme, Philip;
- van der Velde, K. Joeri;
- Lalout, Nawel;
- Zhang, Shuxin;
- Roos, Marco
Publication type:
Article
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00261-9
By:
- Gazzotti, Raphaël;
- Faron, Catherine;
- Gandon, Fabien;
- Lacroix-Hugues, Virginie;
- Darmon, David
Publication type:
Article
Improving reusability along the data life cycle: a regulatory circuits case study.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00266-4
By:
- Louarn, Marine;
- Chatonnet, Fabrice;
- Garnier, Xavier;
- Fest, Thierry;
- Siegel, Anne;
- Faron, Catherine;
- Dameron, Olivier
Publication type:
Article
Text mining-based measurement of precision of polysomnographic reports as basis for intervention.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00259-3
By:
- Baty, Florent;
- Hegermann, Jemima;
- Locatelli, Tiziana;
- Rüegg, Claudio;
- Gysin, Christian;
- Rassouli, Frank;
- Brutsche, Martin
Publication type:
Article
Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00262-8
By:
- Tariq, Amara;
- Kallas, Omar;
- Balthazar, Patricia;
- Lee, Scott Jeffery;
- Desser, Terry;
- Rubin, Daniel;
- Gichoya, Judy Wawira;
- Banerjee, Imon
Publication type:
Article
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00257-x
By:
- Schröder, Max;
- Staehlke, Susanne;
- Groth, Paul;
- Nebe, J. Barbara;
- Spors, Sascha;
- Krüger, Frank
Publication type:
Article
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00253-1
By:
- Samuel, Sheeba;
- König-Ries, Birgitta
Publication type:
Article
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00258-w
By:
- Müller, Bernd;
- Castro, Leyla Jael;
- Rebholz-Schuhmann, Dietrich
Publication type:
Article
An annotated dataset for extracting gene-melanoma relations from scientific literature.
Published in:
Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00251-3
By:
- Zanoli, Roberto;
- Lavelli, Alberto;
- Löffler, Theresa;
- Perez Gonzalez, Nicolas Andres;
- Rinaldi, Fabio
Publication type:
Article