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The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0165-6
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Identifying genotype-phenotype relationships in biomedical text.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0163-8
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Experiences from the anatomy track in the ontology alignment evaluation initiative.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0166-5
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Matching disease and phenotype ontologies in the ontology alignment evaluation initiative.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0162-9
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Querying clinical data in HL7 RIM based relational model with morph-RDB.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0155-8
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Integrating phenotype ontologies with PhenomeNET.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0167-4
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Using semantics for representing experimental protocols.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0160-y
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Drug target ontology to classify and integrate drug discovery data.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0161-x
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Entity recognition in the biomedical domain using a hybrid approach.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0157-6
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A document-centric approach for developing the tolAPC ontology.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0159-4
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Towards refactoring the Molecular Function Ontology with a UML profile for function modeling.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0152-y
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A histological ontology of the human cardiovascular system.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0158-5
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Simplifying drug package leaflets written in Spanish by using word embedding.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0156-7
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Analysis and visualization of disease courses in a semantically-enabled cancer registry.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0154-9
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Semantic annotation in biomedicine: the current landscape.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0153-x
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Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0150-0
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PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 75, doi. 10.1186/s13326-017-0151-z
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An automatic approach for constructing a knowledge base of symptoms in Chinese.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 66, doi. 10.1186/s13326-017-0145-x
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Investigations on factors influencing HPO-based semantic similarity calculation.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 57, doi. 10.1186/s13326-017-0144-y
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A novel method to identify pre-microRNA in various species knowledge base on various species.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 50, doi. 10.1186/s13326-017-0143-z
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Dynamically analyzing cell interactions in biological environments using multiagent social learning framework.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 40, doi. 10.1186/s13326-017-0142-0
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Constructing an integrated gene similarity network for the identification of disease genes.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 25, doi. 10.1186/s13326-017-0141-1
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DisSetSim: an online system for calculating similarity between disease sets.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 18, doi. 10.1186/s13326-017-0140-2
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Revealing protein functions based on relationships of interacting proteins and GO terms.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 9, doi. 10.1186/s13326-017-0139-8
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Multiple kernels learning-based biological entity relationship extraction method.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0138-9
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Towards achieving semantic interoperability of clinical study data with FHIR.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0148-7
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Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0146-9
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Predicting activities of daily living for cancer patients using an ontology-guided machine learning methodology.
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- Journal of Biomedical Semantics, 2017, p. 1, doi. 10.1186/s13326-017-0149-6
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Design of an extensive information representation scheme for clinical narratives.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0135-z
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Ontology-based specification, identification and analysis of perioperative risks.
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- Journal of Biomedical Semantics, 2017, v. 8, n. 1, p. 1, doi. 10.1186/s13326-017-0147-8
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Ontological interpretation of biomedical database content.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0127-z
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Discovering associations between adverse drug events using pattern structures and ontologies.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0137-x
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An ontology-driven tool for structured data acquisition using Web forms.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0133-1
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Towards a more molecular taxonomy of disease.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0134-0
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Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0129-x
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RDFIO: extending Semantic MediaWiki for interoperable biomedical data management.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0136-y
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Disease Compass- a navigation system for disease knowledge based on ontology and linked data techniques.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0132-2
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Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0115-3
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- Article
Literature evidence in open targets - a target validation platform.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0131-3
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Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0130-4
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Dead simple OWL design patterns.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0126-0
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Modulated evaluation metrics for drug-based ontologies.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0124-2
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NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0128-y
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MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0123-3
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SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0116-2
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BioFed: federated query processing over life sciences linked open data.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0118-0
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Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0122-4
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Learning from biomedical linked data to suggest valid pharmacogenes.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0125-1
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Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0121-5
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Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets.
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- Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0120-6
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