Works matching IS 17456150 AND DT 2015 AND VI 10 AND IP 1

Results: 71

RNA motif discovery: a computational overview.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0090-5

By:

Achar, Avinash;
Sætrom, Pål

Publication type:

Article

MicroRNA-derived network analysis of differentially methylated genes in schizophrenia, implicating GABA receptor B1 [GABBR1] and protein kinase B [AKT1].

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0089-y

By:

Gumerov, Vadim;
Hegyi, Hedi

Publication type:

Article

The human disease network in terms of dysfunctional regulatory mechanisms.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0088-z

By:

Jing Yang;
Su-Juan Wu;
Wen-Tao Dai;
Yi-Xue Li;
Yuan-Yuan Li

Publication type:

Article

Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0086-1

By:

Srihari, Sriganesh;
Singla, Jitin;
Limsoon Wong;
Ragan, Mark A.

Publication type:

Article

Variation in the ribosome interacting loop of the Sec61α from Giardia lamblia.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0087-0

By:

Sinha, Abhishek;
Ray, Atrayee;
Ganguly, Sandipan;
Dastidar, Shubhra Ghosh;
Sarkar, Srimonti

Publication type:

Article

Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0085-2

By:

Caputo, Aurélia;
Merhej, Vicky;
Georgiades, Kalliopi;
Fournier, Pierre-Edouard;
Croce, Olivier;
Robert, Catherine;
Raoult, Didier

Publication type:

Article

TMFoldWeb: a web server for predicting transmembrane protein fold class.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0082-5

By:

Kozma, Dániel;
Tusnády, Gábor E.

Publication type:

Article

Why the Central Dogma: on the nature of the great biological exclusion principle.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0084-3

By:

Koonin, Eugene V.

Publication type:

Article

KGCAK: a K-mer based database for genome-wide phylogeny and complexity evaluation.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0083-4

By:

Dapeng Wang;
Jiayue Xu;
Jun Yu

Publication type:

Article

Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0081-6

By:

Karaiskos, Spyros;
Naqvi, Ammar S.;
Swanson, Karl E.;
Grigoriev, Andrey

Publication type:

Article

Phylogenetic and evolutionary analysis of functional divergence among Gamma glutamyl transpeptidase (GGT) subfamilies.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0080-7

By:

Verma, Ved Vrat;
Gupta, Rani;
Goel, Manisha;
Osterman, Andrei;
Orengo, Christine;
Subramanian, Srikrishna

Publication type:

Article

Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0076-3

By:

Yiyi Wang;
Lin Feng;
Yuxin Zhu;
Yuan Li;
Hanwei Yan;
Yan Xiang;
Dandekar;
Andrade-Navarro

Publication type:

Article

Was the evolutionary road towards adaptive immunity paved with endothelium?

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0079-0

By:

van Niekerk, Gustav;
Davis, Tanja;
Engelbrecht, Anna-Mart;
Jun Yu;
Greenspan, Neil

Publication type:

Article

Microarray experiments and factors which affect their reliability.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0077-2

By:

Jaksik, Roman;
Iwanaszko, Marta;
Rzeszowska-Wolny, Joanna;
Kimmel, Marek;
Siefert, Janet;
Hanin, Leonid;
Jordan, I. King

Publication type:

Article

Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 48, doi. 10.1186/s13062-015-0076-3

By:

Yiyi Wang;
Lin Feng;
Yuxin Zhu;
Yuan Li;
Hanwei Yan;
Yan Xiang

Publication type:

Article

Tradeoff between robustness and elaboration in carotenoid networks produces cycles of avian color diversification.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0073-6

By:

Badyaev, Alexander V.;
Morrison, Erin S.;
Belloni, Virginia;
Sanderson, Michael J.

Publication type:

Article

De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0072-7

By:

Kakumani, Pavan Kumar;
Shukla, Rohit;
Todur, Vivek N.;
Malhotra, Pawan;
Mukherjee, Sunil K.;
Bhatnagar, Raj K.

Publication type:

Article

Tradeoff between robustness and elaboration in carotenoid networks produces cycles of avian color diversification.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 45, doi. 10.1186/s13062-015-0073-6

By:

Badyaev, Alexander V.;
Morrison, Erin S.;
Belloni, Virginia;
Sanderson, Michael J.

Publication type:

Article

A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES).

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0070-9

By:

Campos, Marcelino;
Llorens, Carlos;
Sempere, José M.;
Futami, Ricardo;
Rodriguez, Irene;
Carrasco, Purificación;
Capilla, Rafael;
Latorre, Amparo;
Coque, Teresa M.;
Moya, Andres;
Baquero, Fernando

Publication type:

Article

Prediction of problematic complexes from PPI networks: sparse, embedded, and small complexes.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0067-4

By:

Chern Han Yong;
Limsoon Wong

Publication type:

Article

Models of buffering of dosage imbalances in protein complexes.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0063-8

By:

Veitia, Reiner A.;
Birchler, James A.

Publication type:

Article

Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0059-4

By:

Shalaeva, Daria N.;
Dibrova, Daria V.;
Galperin, Michael Y.;
Mulkidjanian, Armen Y.

Publication type:

Article

Experiences with workflows for automating data-intensive bioinformatics.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0071-8

By:

Spjuth, Ola;
Bongcam-Rudloff, Erik;
Carrasco Hernández, Guillermo;
Forer, Lukas;
Giovacchini, Mario;
Guimera, Roman Valls;
Kallio, Aleksi;
Korpelainen, Eija;
Kańduła, Maciej M.;
Krachunov, Milko;
Kreil, David P.;
Kulev, Ognyan;
Łabaj, Paweł P.;
Lampa, Samuel;
Pireddu, Luca;
Schönherr, Sebastian;
Siretskiy, Alexey;
Vassilev, Dimitar

Publication type:

Article

De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 44, doi. 10.1186/s13062-015-0072-7

By:

Kakumani, Pavan Kumar;
Shukla, Rohit;
Todur, Vivek N.;
Malhotra, Pawan;
Mukherjee, Sunil K.;
Bhatnagar, Raj K.

Publication type:

Article

Models of buffering of dosage imbalances in protein complexes.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 42, doi. 10.1186/s13062-015-0063-8

By:

Veitia, Reiner A.;
Birchler, James A.

Publication type:

Article

Experiences with workflows for automating data-intensive bioinformatics.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 43, doi. 10.1186/s13062-015-0071-8

By:

Spjuth, Ola;
Bongcam-Rudloff, Erik;
Carrasco Hernández, Guillermo;
Forer, Lukas;
Giovacchini, Mario;
Guimera, Roman Valls;
Kallio, Aleksi;
Korpelainen, Eija;
Kańduła, Maciej M.;
Krachunov, Milko;
Kreil, David P.;
Kulev, Ognyan;
Łabaj, Paweł P.;
Lampa, Samuel;
Pireddu, Luca;
Schönherr, Sebastian;
Siretskiy, Alexey;
Vassilev, Dimitar

Publication type:

Article

A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES).

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 41, doi. 10.1186/s13062-015-0070-9

By:

Campos, Marcelino;
Llorens, Carlos;
Sempere, José M.;
Futami, Ricardo;
Rodriguez, Irene;
Carrasco, Purificación;
Capilla, Rafael;
Latorre, Amparo;
Coque, Teresa M.;
Moya, Andres;
Baquero, Fernando

Publication type:

Article

De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0069-2

By:

Mudgal, Richa;
Sandhya, Sankaran;
Chandra, Nagasuma;
Srinivasan, Narayanaswamy

Publication type:

Article

dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0068-3

By:

Wing-Cheong Wong;
Choon-Kong Yap;
Eisenhaber, Birgit;
Eisenhaber, Frank

Publication type:

Article

The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0066-5

By:

Kaur, Gurmeet;
Subramanian, Srikrishna

Publication type:

Article

The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0065-6

By:

Jay, Zackary J.;
Inskeep, William P.

Publication type:

Article

Synthetic circuit designs for earth terraformation.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0064-7

By:

Solé, Ricard V.;
Montañez, Raúl;
Duran-Nebreda, Salva

Publication type:

Article

The Lamarckian chicken and the Darwinian egg.

Published in:

2015

By:

Pilpel, Yitzhak;
Rechavi, Oded

Publication type:

Opinion

Prediction of problematic complexes from PPI networks: sparse, embedded, and small complexes.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 40, doi. 10.1186/s13062-015-0067-4

By:

Chern Han Yong;
Limsoon Wong

Publication type:

Article

Synthetic circuit designs for earth terraformation

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 37, doi. 10.1186/s13062-015-0064-7

By:

Solé, Ricard V.;
Montañez, Raúl;
Duran-Nebreda, Salva

Publication type:

Article

The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 36, doi. 10.1186/s13062-015-0066-5

By:

Kaur, Gurmeet;
Subramanian, Srikrishna

Publication type:

Article

The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 35, doi. 10.1186/s13062-015-0065-6

By:

Jay, Zackary J.;
Inskeep, William P.

Publication type:

Article

The human transmembrane proteome.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0061-x

By:

Dobson, László;
Reményi, István;
Tusnády, Gábor E.;
Pongor, Sandor;
Galperin, Michael;
Gaudet, Pascale

Publication type:

Article

Emergence of life: Physical chemistry changes the paradigm.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0060-y

By:

Spitzer, Jan;
Pielak, Gary J.;
Poolman, Bert

Publication type:

Article

Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0059-4

By:

Shalaeva, Daria N.;
Dibrova, Daria V.;
Galperin, Michael Y.;
Mulkidjanian, Armen Y.;
Osterman, Andrei L.;
Srinivasan, Narayanaswamy;
Berezovsky, Igor N.;
Vriend, Gerrit

Publication type:

Article

Design principles for cancer therapy guided by changes in complexity of protein-protein interaction networks.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0058-5

By:

Benzekry, Sebastian;
Tuszynski, Jack A.;
Rietman, Edward A.;
Lakka Klement, Giannoula;
Bowen, Nathan J.;
Lipniacki, Tomasz;
Kimmel, Merek

Publication type:

Article

Imprecise intron losses are less frequent than precise intron losses but are not rare in plants.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0056-7

By:

Ming-Yue Ma;
Tao Zhu;
Xue-Nan Li;
Xin-Ran Lan;
Heng-Yuan Liu;
Yu-Fei Yang;
Deng-Ke Niu;
Jun Yu;
Zhang Zhang

Publication type:

Article

Ancient origin of the biosynthesis of lignin precursors.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0052-y

By:

Labeeuw, Leen;
Martone, Patrick T.;
Boucher, Yan;
Case, Rebecca J.;
Ragan, Mark;
Gophna, Uri;
Deschamps, Philippe

Publication type:

Article

In silico ribozyme evolution in a metabolically coupled RNA population.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0049-6

By:

Könnyu, Balázs;
Szilágyi, András;
Czárán, Tamás;
Jékely, Gáspár;
Poole, Anthony;
Mulkidjanian, Armen

Publication type:

Article

The Lamarckian chicken and the Darwinian egg.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 34, doi. 10.1186/s13062-015-0062-9

By:

Pilpel, Yitzhak;
Rechavi, Oded

Publication type:

Article

Ancient origin of the biosynthesis of lignin precursors.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 23, doi. 10.1186/s13062-015-0052-y

By:

Labeeuw, Leen;
Martone, Patrick T.;
Boucher, Yan;
Case, Rebecca J

Publication type:

Article

Mitochondrial activity in gametes and transmission of viable mtDNA.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0057-6

By:

Milani, Liliana;
Ghiselli, Fabrizio

Publication type:

Article

The eukaryotic translation initiation regulator CDC123 defines a divergent clade of ATP-grasp enzymes with a predicted role in novel protein modifications.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0053-x

By:

Maxwell Burroughs, A.;
Zhang, Dapeng;
Aravind, L.

Publication type:

Article

Test on existence of histology subtype-specific prognostic signatures among early stage lung adenocarcinoma and squamous cell carcinoma patients using a Cox-model based filter.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0051-z

By:

Suyan Tian;
Chi Wang;
Ming-Wen An

Publication type:

Article

Synthetic lethals in HIV: ways to avoid drug resistance.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 17, doi. 10.1186/s13062-015-0044-y

By:

Petitjean, Michel;
Badel, Anne;
Veitia, Reiner A;
Vanet, Anne

Publication type:

Article