Works matching IS 14747596 AND DT 2025 AND VI 26 AND IP 1

Results: 31

A refined analysis of Neanderthal-introgressed sequences in modern humans with a complete reference genome.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03502-z
By:
- Liang, Shen-Ao;
- Ren, Tianxin;
- Zhang, Jiayu;
- He, Jiahui;
- Wang, Xuankai;
- Jiang, Xinrui;
- He, Yuan;
- McCoy, Rajiv C.;
- Fu, Qiaomei;
- Akey, Joshua M.;
- Mao, Yafei;
- Chen, Lu
Publication type:
Article
Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.
Published in:
2025
By:
- Schreiber, Jacob Matthew;
- Boix, Carles A.;
- wook Lee, Jin;
- Li, Hongyang;
- Guan, Yuanfang;
- Chang, Chun-Chieh;
- Chang, Jen-Chien;
- Hawkins-Hooker, Alex;
- Schölkopf, Bernhard;
- Schweikert, Gabriele;
- Carulla, Mateo Rojas;
- Canakoglu, Arif;
- Guzzo, Francesco;
- Nanni, Luca;
- Masseroli, Marco;
- Carman, Mark James;
- Pinoli, Pietro;
- Hong, Chenyang;
- Yip, Kevin Y.;
- Spence, Jefrey P.
Publication type:
Correction Notice
Unveiling the role of chromosome structure morphology on gene function through chromosome conformation analysis.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03472-8
By:
- Zhan, Yuxiang;
- Yildirim, Asli;
- Boninsegna, Lorenzo;
- Alber, Frank
Publication type:
Article
PANE: fast and reliable ancestral reconstruction on ancient genotype data with non-negative least square and principal component analysis.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03491-z
By:
- de Gennaro, Luciana;
- Molinaro, Ludovica;
- Raveane, Alessandro;
- Santonastaso, Federica;
- Saponetti, Sandro Sublimi;
- Massi, Michela Carlotta;
- Pagani, Luca;
- Metspalu, Mait;
- Hellenthal, Garrett;
- Kivisild, Toomas;
- Ventura, Mario;
- Montinaro, Francesco
Publication type:
Article
Dynamic changes in 3D chromatin structure during male gametogenesis in Arabidopsis thaliana.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03496-8
By:
- Song, Zhihan;
- Xia, Qimin;
- Yang, Minqi;
- Yang, Tingting;
- Liu, Yali;
- Wang, Dingyue;
- Shu, Jiayue;
- Liu, Zhiyuan;
- Chi, Yi;
- Xu, Heming;
- Xing, Dong;
- Zhou, Yue
Publication type:
Article
Multi-omics analysis in primary T cells elucidates mechanisms behind disease-associated genetic loci.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03492-y
By:
- Shi, Chenfu;
- Zhao, Danyun;
- Butler, Jake;
- Frantzeskos, Antonios;
- Rossi, Stefano;
- Ding, James;
- Ferrazzano, Carlo;
- Wynn, Charlotte;
- Hum, Ryan Malcolm;
- Richards, Ellie;
- Gupta, Muskan;
- Patel, Khadijah;
- Yap, Chuan Fu;
- Plant, Darren;
- Grencis, Richard;
- Martin, Paul;
- Adamson, Antony;
- Eyre, Stephen;
- Bowes, John;
- Barton, Anne
Publication type:
Article
Long-read sequencing and genome assembly of natural history collection samples and challenging specimens.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03487-9
By:
- Bein, Bernhard;
- Chrysostomakis, Ioannis;
- Arantes, Larissa S.;
- Brown, Tom;
- Gerheim, Charlotte;
- Schell, Tilman;
- Schneider, Clément;
- Leushkin, Evgeny;
- Chen, Zeyuan;
- Sigwart, Julia;
- Gonzalez, Vanessa;
- Wong, Nur Leena W. S.;
- Santos, Fabricio R.;
- Blom, Mozes P. K.;
- Mayer, Frieder;
- Mazzoni, Camila J.;
- Böhne, Astrid;
- Winkler, Sylke;
- Greve, Carola;
- Hiller, Michael
Publication type:
Article
SpatialLeiden: spatially aware Leiden clustering.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03489-7
By:
- Müller-Bötticher, Niklas;
- Sahay, Shashwat;
- Eils, Roland;
- Ishaque, Naveed
Publication type:
Article
CENP-A/CENP-B uncoupling in the evolutionary reshuffling of centromeres in equids.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03490-0
By:
- Cappelletti, Eleonora;
- Piras, Francesca M.;
- Biundo, Marialaura;
- Raimondi, Elena;
- Nergadze, Solomon G.;
- Giulotto, Elena
Publication type:
Article
SETD2 loss-of-function uniquely sensitizes cells to epigenetic targeting of NSD1-directed H3K36 methylation.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03483-z
By:
- Wagner, Ryan T.;
- Hlady, Ryan A.;
- Pan, Xiaoyu;
- Wang, Liguo;
- Kim, Sungho;
- Zhao, Xia;
- El Khoury, Louis Y.;
- Shaikh, Shafiq;
- Zhong, Jian;
- Lee, Jeong-Heon;
- Grembecka, Jolanta;
- Cierpicki, Tomasz;
- Ho, Thai H.;
- Robertson, Keith D.
Publication type:
Article
MAAT: a new nonparametric Bayesian framework for incorporating multiple functional annotations in transcriptome-wide association studies.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03485-x
By:
- Wang, Han;
- Li, Xiang;
- Li, Teng;
- Li, Zhe;
- Sham, Pak Chung;
- Zhang, Yan Dora
Publication type:
Article
A novel decomposer-exploiter interaction framework of plant residue microbial decomposition.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03486-w
By:
- Miao, Youzhi;
- Wang, Wei;
- Xu, Huanhuan;
- Xia, Yanwei;
- Gong, Qingxin;
- Xu, Zhihui;
- Zhang, Nan;
- Xun, Weibing;
- Shen, Qirong;
- Zhang, Ruifu
Publication type:
Article
A fully phased octoploid strawberry genome reveals the evolutionary dynamism of centromeric satellites.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03482-0
By:
- Jin, Xin;
- Du, Haiyuan;
- Chen, Maoxian;
- Zheng, Xu;
- He, Yiying;
- Zhu, Andan
Publication type:
Article
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03480-2
By:
- Okamoto, Jeffrey;
- Yin, Xianyong;
- Ryan, Brady;
- Chiou, Joshua;
- Luca, Francesca;
- Pique-Regi, Roger;
- Im, Hae Kyung;
- Morrison, Jean;
- Burant, Charles;
- Fauman, Eric B.;
- Laakso, Markku;
- Boehnke, Michael;
- Wen, Xiaoquan
Publication type:
Article
Engineering a bacterial toxin deaminase from the DYW-family into a novel cytosine base editor for plants and mammalian cells.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03478-w
By:
- Zhang, Dingbo;
- Parth, Fiona;
- da Silva, Laura Matos;
- Ha, Teng-Cheong;
- Schambach, Axel;
- Boch, Jens
Publication type:
Article
Author Correction: X-Mapper: fast and accurate sequence alignment via gapped x-mers.
Published in:
2025
By:
- Gaston, Jeffry M.;
- Alm, Eric J.;
- Zhang, An-Ni
Publication type:
Correction Notice
Marsilea: an intuitive generalized paradigm for composable visualizations.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03469-3
By:
- Zheng, Yimin;
- Zheng, Zhihang;
- Rendeiro, André F.;
- Cheung, Edwin
Publication type:
Article
Resolving the source of branch length variation in the Y chromosome phylogeny.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03468-4
By:
- Swiel, Yaniv;
- Kelso, Janet;
- Peyrégne, Stéphane
Publication type:
Article
Dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03475-z
By:
- Almeida, Miguel Vasconcelos;
- Blumer, Moritz;
- Yuan, Chengwei Ulrika;
- Sierra, Pío;
- Price, Jonathan L.;
- Quah, Fu Xiang;
- Friman, Aleksandr;
- Dallaire, Alexandra;
- Vernaz, Grégoire;
- Putman, Audrey L. K.;
- Smith, Alan M.;
- Joyce, Domino A.;
- Butter, Falk;
- Haase, Astrid D.;
- Durbin, Richard;
- Santos, M. Emília;
- Miska, Eric A.
Publication type:
Article
X-Mapper: fast and accurate sequence alignment via gapped x-mers.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03473-7
By:
- Gaston, Jeffry M.;
- Alm, Eric J.;
- Zhang, An-Ni
Publication type:
Article
MaveDB 2024: a curated community database with over seven million variant effects from multiplexed functional assays.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03476-y
By:
- Rubin, Alan F.;
- Stone, Jeremy;
- Bianchi, Aisha Haley;
- Capodanno, Benjamin J.;
- Da, Estelle Y.;
- Dias, Mafalda;
- Esposito, Daniel;
- Frazer, Jonathan;
- Fu, Yunfan;
- Grindstaff, Sally B.;
- Harrington, Matthew R.;
- Li, Iris;
- McEwen, Abbye E.;
- Min, Joseph K.;
- Moore, Nick;
- Moscatelli, Olivia G.;
- Ong, Jesslyn;
- Polunina, Polina V.;
- Rollins, Joshua E.;
- Rollins, Nathan J.
Publication type:
Article
Author Correction: Considerations in the search for epistasis.
Published in:
2025
By:
- Balvert, Marleen;
- Cooper-Knock, Johnathan;
- Stamp, Julian;
- Byrne, Ross P.;
- Mourragui, Soufane;
- van Gils, Juami;
- Benonisdottir, Stefania;
- Schlüter, Johannes;
- Kenna, Kevin;
- Abeln, Sanne;
- Iacoangeli, Alfredo;
- Daub, Joséphine T.;
- Browning, Brian L.;
- Taş, Gizem;
- Hu, Jiajing;
- Wang, Yan;
- Alhathli, Elham;
- Harvey, Calum;
- Pianesi, Luna;
- Schulte, Sara C.
Publication type:
Correction Notice
Alternative silencing states of transposable elements in Arabidopsis associated with H3K27me3.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03466-6
By:
- Hure, Valentin;
- Piron-Prunier, Florence;
- Yehouessi, Tamara;
- Vitte, Clémentine;
- Kornienko, Aleksandra E.;
- Adam, Gabrielle;
- Nordborg, Magnus;
- Déléris, Angélique
Publication type:
Article
Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03474-0
By:
- Wang, Yihan;
- Armendariz, Daniel A.;
- Wang, Lei;
- Zhao, Huan;
- Xie, Shiqi;
- Hon, Gary C.
Publication type:
Article
Pangenome mining of the Streptomyces genus redefines species' biosynthetic potential.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03471-9
By:
- Mohite, Omkar S.;
- Jørgensen, Tue S.;
- Booth, Thomas J.;
- Charusanti, Pep;
- Phaneuf, Patrick V.;
- Weber, Tilmann;
- Palsson, Bernhard O.
Publication type:
Article
Relating ecological diversity to genetic discontinuity across bacterial species.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03443-z
By:
- Passarelli-Araujo, Hemanoel;
- Venancio, Thiago M.;
- Hanage, William P.
Publication type:
Article
Graph pangenome reveals the regulation of malate content in blood-fleshed peach by NAC transcription factors.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03470-w
By:
- Chen, Wenbo;
- Xie, Qi;
- Fu, Jia;
- Li, Shaojia;
- Shi, Yanna;
- Lu, Jiao;
- Zhang, Yuanyuan;
- Zhao, Yingjie;
- Ma, Ruijuan;
- Li, Baijun;
- Zhang, Bo;
- Grierson, Donald;
- Yu, Mingliang;
- Fei, Zhangjun;
- Chen, Kunsong
Publication type:
Article
Pre-processing of paleogenomes: mitigating reference bias and postmortem damage in ancient genome data.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03462-w
By:
- Koptekin, Dilek;
- Yapar, Etka;
- Vural, Kıvılcım Başak;
- Sağlıcan, Ekin;
- Altınışık, N. Ezgi;
- Malaspinas, Anna-Sapfo;
- Alkan, Can;
- Somel, Mehmet
Publication type:
Article
SMORE: spatial motifs reveal patterns in cellular architecture of complex tissues.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03467-5
By:
- Samadi, Zainalabedin;
- Hao, Kai;
- Askary, Amjad
Publication type:
Article
Spatiotemporal dynamics of early oogenesis in pigs.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03464-8
By:
- Ge, Wei;
- Niu, Yi-Lin;
- Li, Yu-Kang;
- Li, Li;
- Wang, Han;
- Li, Wen-Wen;
- Qiao, Tian;
- Feng, Yan-Ni;
- Feng, Yu-Qing;
- Liu, Jing;
- Wang, Jun-Jie;
- Sun, Xiao-Feng;
- Cheng, Shun-Feng;
- Li, Lan;
- Shen, Wei
Publication type:
Article
SiCLAT: simultaneous imaging of chromatin loops and active transcription in living cells.
Published in:
Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03463-9
By:
- Wan, Xin;
- Kong, Jie;
- Hu, Xiaodi;
- Liu, Lulu;
- Yang, Yuanping;
- Li, Hu;
- Liu, Gaoao;
- Niu, Xingchen;
- Chen, Fengling;
- Zhang, Dan;
- Zhu, Dahai;
- Zhang, Yong
Publication type:
Article