Works matching IS 14747596 AND DT 2022 AND VI 23
Results: 305
Truvari: refined structural variant comparison preserves allelic diversity.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02840-6
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Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02837-1
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NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02835-3
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Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02825-5
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Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomics.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02820-w
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- Article
Saturation-scale functional evidence supports clinical variant interpretation in Lynch syndrome.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02839-z
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Parallel single-cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02828-2
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Large-scale genomic and transcriptomic profiles of rice hybrids reveal a core mechanism underlying heterosis.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02822-8
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Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02833-5
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Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02834-4
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Exploring functional protein covariation across single cells using nPOP.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02817-5
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Strobealign: flexible seed size enables ultra-fast and accurate read alignment.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02831-7
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- Article
G-quadruplexes sense natural porphyrin metabolites for regulation of gene transcription and chromatin landscapes.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02830-8
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Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02823-7
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STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02826-4
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Distance-dependent inhibition of translation initiation by downstream out-of-frame AUGs is consistent with a Brownian ratchet process of ribosome scanning.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02829-1
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Spatial omics technologies at multimodal and single cell/subcellular level.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02824-6
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The mutational dynamics of short tandem repeats in large, multigenerational families.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02818-4
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Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02816-6
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Pathogen genomics study of an early medieval community in Germany reveals extensive co-infections.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02806-8
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- Article
Distance-dependent inhibition of translation initiation by downstream out-of-frame AUGs is consistent with a Brownian ratchet process of ribosome scanning.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02829-1
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- Article
New roles for AP-1/JUNB in cell cycle control and tumorigenic cell invasion via regulation of cyclin E1 and TGF-β2.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02800-0
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Pan-cancer surveys indicate cell cycle-related roles of primate-specific genes in tumors and embryonic cerebrum.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02821-9
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METTL4-mediated nuclear N6-deoxyadenosine methylation promotes metastasis through activating multiple metastasis-inducing targets.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02819-3
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SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02813-9
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Deciphering the impact of genetic variation on human polyadenylation using APARENT2.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02799-4
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Statistics or biology: the zero-inflation controversy about scRNA-seq data.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02601-5
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A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02595-6
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MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02815-7
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- Article
SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02813-9
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- Article
Cross-regulome profiling of RNA polymerases highlights the regulatory role of polymerase III on mRNA transcription by maintaining local chromatin architecture.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02812-w
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m<sup>6</sup>A RNA methylation impairs gene expression variability and reproductive thermotolerance in Arabidopsis.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02814-8
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The genetic and biochemical determinants of mRNA degradation rates in mammals.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02811-x
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Parallel evolution of amphioxus and vertebrate small-scale gene duplications.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02808-6
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metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02810-y
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MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02794-9
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Survey of the binding preferences of RNA-binding proteins to RNA editing events.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02741-8
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A benchmark study of deep learning-based multi-omics data fusion methods for cancer.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02739-2
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Evolution and function of developmentally dynamic pseudogenes in mammals.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02802-y
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Differential richness inference for 16S rRNA marker gene surveys.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02722-x
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Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02789-6
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Gene flow and introgression are pervasive forces shaping the evolution of bacterial species.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02809-5
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Mapping responsive genomic elements to heat stress in a maize diversity panel.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02807-7
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- Article
Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02728-5
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- Article
Comprehensive transcriptional variability analysis reveals gene networks regulating seed oil content of Brassica napus.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02801-z
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IDEAS: individual level differential expression analysis for single-cell RNA-seq data.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02605-1
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- Article
Allele-specific expression reveals genes with recurrent cis-regulatory alterations in high-risk neuroblastoma.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02640-y
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- Article
Towards accurate and reliable resolution of structural variants for clinical diagnosis.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02636-8
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The spinach YY genome reveals sex chromosome evolution, domestication, and introgression history of the species.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02633-x
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HyperChIP: identification of hypervariable signals across ChIP-seq or ATAC-seq samples.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02627-9
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