Works matching IS 17487188 AND DT 2017 AND VI 12
Results: 27
HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0116-x
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Phylogeny reconstruction based on the length distribution of k-mismatch common substrings.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0118-8
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Generalized enhanced suffix array construction in external memory.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0117-9
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Algorithms for matching partially labelled sequence graphs.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0115-y
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Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0113-0
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Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0110-3
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Biologically feasible gene trees, reconciliation maps and informative triples.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0114-z
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A hybrid parameter estimation algorithm for beta mixtures and applications to methylation state classification.
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- Algorithms for Molecular Biology, 2017, v. 12, n. 1, p. 1, doi. 10.1186/s13015-017-0112-1
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The feasibility of genome-scale biological network inference using Graphics Processing Units.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0100-5
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ASP-based method for the enumeration of attractors in non-deterministic synchronous and asynchronous multi-valued networks.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0111-2
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A graph extension of the positional Burrows-Wheeler transform and its applications.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0109-9
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Isometric gene tree reconciliation revisited.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0108-x
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Algorithms for computing the double cut and join distance on both gene order and intergenic sizes.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0107-y
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The gene family-free median of three.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0106-z
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StreAM-T<sub>g</sub>: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 2, doi. 10.1186/s13015-017-0105-0
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Complexity and algorithms for copy-number evolution problems.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0103-2
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A better scoring model for de novo peptide sequencing: the symmetric difference between explained and measured masses.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0104-1
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Aligning coding sequences with frameshift extension penalties.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0101-4
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Gerbil: a fast and memory-efficient k-mer counter with GPU-support.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0097-9
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Core column prediction for protein multiple sequence alignments.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0102-3
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An efficient algorithm for testing the compatibility of phylogenies with nested taxa.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0099-7
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On avoided words, absent words, and their application to biological sequence analysis.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0094-z
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Approximating the correction of weighted and unweighted orthology and paralogy relations.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0096-x
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On the computational complexity of the maximum parsimony reconciliation problem in the duplication-loss-coalescence model.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0098-8
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Approximating the DCJ distance of balanced genomes in linear time.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0095-y
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Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0091-2
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Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds.
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- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0092-1
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