Works matching DE "GENE regulatory networks"

Results: 5000

Identification of m<sup>6</sup>A-modified gene signatures in lung adenocarcinoma tumorigenesis and their potential role in drug resistance.
Published in:
Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02106-0
By:
- Han, Xiaomin;
- Ma, Qiang;
- Chang, Ruyi;
- Xin, Siyuan;
- Zhang, Guojun;
- Wang, Ruilong;
- Wang, Yukun
Publication type:
Article
Genetic parameters, genomic prediction, and identification of regulatory regions located on chromosome 14 for weight traits in Nellore cattle.
Published in:
Journal of Animal Breeding & Genetics, 2025, v. 142, n. 2, p. 184, doi. 10.1111/jbg.12895
By:
- Teodoro, Miller;
- Maiorano, Amanda Marchi;
- Campos, Gabriel Soares;
- de Albuquerque, Lúcia Galvão;
- de Oliveira, Henrique Nunes
Publication type:
Article
Diverse functions of DEAD‐box proteins in oligodendrocyte development, differentiation, and homeostasis.
Published in:
Journal of Neurochemistry, 2025, v. 169, n. 1, p. 1, doi. 10.1111/jnc.16238
By:
- Bizen, Norihisa;
- Takebayashi, Hirohide
Publication type:
Article
Anoikis and SPP1 in idiopathic pulmonary fibrosis: integrating bioinformatics, cell, and animal studies to explore prognostic biomarkers and PI3K/AKT signaling regulation.
Published in:
Expert Review of Clinical Immunology, 2024, v. 20, n. 6, p. 679, doi. 10.1080/1744666X.2024.2315218
By:
- Liao, Yi;
- Yang, Yan;
- Zhou, Guanghong;
- Chen, Lijuan;
- Yang, Yang;
- Guo, Shujin;
- Zuo, Qiunan;
- Zou, Jun
Publication type:
Article
Genetic Variation of Hypothalamic-Pituitary-Adrenal Axis Activity in Farm Animals and Beyond.
Published in:
Neuroendocrinology, 2025, v. 115, n. 2, p. 128, doi. 10.1159/000542831
By:
- Mormede, Elena;
- Mormede, Pierre
Publication type:
Article
Physiological, ionomic, transcriptomic and metabolomic analyses reveal molecular mechanisms of root adaption to salt stress in water spinach.
Published in:
BMC Genomics, 2025, v. 26, p. N.PAG, doi. 10.1186/s12864-025-11409-z
By:
- Li, Zhenqin;
- Cheng, Long;
- Li, Sitong;
- Liu, Guangcai;
- Liu, Sijia;
- Xu, Duo;
- Yang, Rongchao;
- Feng, Feng;
- Wang, Junning;
- Zheng, Chao
Publication type:
Article
Prognostic and Immunotherapeutic Value of Regulatory T Cell Marker Gene Signature in Melanoma.
Published in:
Iranian Journal of Allergy, Asthma & Immunology, 2025, v. 24, n. 2, p. 237, doi. 10.18502/ijaai.v24i2.18150
By:
- Yurong Liu;
- Jianlan Liu;
- Keyu Jiang;
- Xiaolong Cheng;
- Sitong Di;
- Jian Tang;
- Binlin Luo
Publication type:
Article
Comprehensive Analysis Based on Genes Associated With Cuproptosis, Ferroptosis, and Pyroptosis for the Prediction of Diagnosis and Therapies in Coronary Artery Disease.
Published in:
Cardiovascular Therapeutics, 2025, v. 2025, n. 1, p. 1, doi. 10.1155/cdr/9106621
By:
- Zhang, Yongyi;
- Guo, Zhehan;
- Lai, Renkui;
- Zou, Xu;
- Ma, Liuling;
- Cai, Tianjin;
- Huang, Jingyi;
- Huang, Wenxiang;
- Zou, Bingcheng;
- Zhou, Jinming;
- Li, Jinxin;
- Riaz, Muhammad
Publication type:
Article
Unraveling the genetic mysteries of sarcopenia: A bioinformatics approach.
Published in:
Technology & Health Care, 2025, v. 33, n. 2, p. 1140, doi. 10.1177/09287329241291323
By:
- Deng, Hui;
- Wang, Yuming;
- Dai, Yang;
- Wang, Qian;
- Lu, Hao;
- Wang, Qing
Publication type:
Article
Metabolic pathway activation and immune microenvironment features in non-small cell lung cancer: insights from single-cell transcriptomics.
Published in:
Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1546764
By:
- Liu, Yanru;
- Liu, Hanmin;
- Xiong, Ying
Publication type:
Article
Single-nucleus multiomics reveals the gene regulatory networks underlying sex determination of murine primordial germ cells.
Published in:
eLife, 2025, p. 1, doi. 10.7554/eLife.96591
By:
- Alexander, Adriana K.;
- Rodriguez, Karina F.;
- Yu-Ying Chen;
- Amato, Ciro;
- Estermann, Martin A.;
- Nicol, Barbara;
- Xin Xu;
- Yao, Humphrey H. C.
Publication type:
Article
Integrated Analysis to Reveal Heterogeneity of Tumor‐Associated Neutrophils in Glioma.
Published in:
Cancer Medicine, 2025, v. 14, n. 5, p. 1, doi. 10.1002/cam4.70745
By:
- Wang, Wen;
- Li, Junsheng;
- He, Qiheng;
- Liu, Chenglong;
- Wang, Siyu;
- Zheng, Zhiyao;
- Zhang, Bojian;
- Mou, Siqi;
- Sun, Wei;
- Zhao, Jizong
Publication type:
Article
Circadian-Mediated Regulation of Growth, Chloroplast Proteome, Targeted Metabolomics and Gene Regulatory Network in Spinacia oleracea Under Drought Stress.
Published in:
Agriculture; Basel, 2025, v. 15, n. 5, p. 522, doi. 10.3390/agriculture15050522
By:
- Venkat, Ajila;
- Muneer, Sowbiya
Publication type:
Article
Wild soybean cotyledons at the emergence stage tolerate alkali stress by maintaining carbon and nitrogen metabolism, and accumulating organic acids.
Published in:
Physiologia Plantarum, 2025, v. 177, n. 1, p. 1, doi. 10.1111/ppl.70117
By:
- Sun, Yang;
- Shu, Hang;
- Lu, Duo;
- Zhang, Tao;
- Li, Mingxia;
- Guo, Jixun;
- Shi, Lianxuan
Publication type:
Article
GAI1 underlines the antagonism between gibberellin and jasmonic acid in modulating disease resistance.
Published in:
Physiologia Plantarum, 2025, v. 177, n. 1, p. 1, doi. 10.1111/ppl.70101
By:
- Xu, Haoran;
- Tan, Mengting;
- Zhang, Bowen;
- Yan, Wenlei;
- Zeng, Hongqiu
Publication type:
Article
Synthetic alleles to study MUTE‐dependent molecular transitions in stomatal development.
Published in:
Physiologia Plantarum, 2025, v. 177, n. 1, p. 1, doi. 10.1111/ppl.70072
By:
- Illescas‐Miranda, Jonatan;
- Saiz‐Pérez, Josué;
- de Marcos, Alberto;
- Fenoll, Carmen;
- Mena, Montaña
Publication type:
Article
Untargeted Metabolomics Analysis Reveals Differential Accumulation of Flavonoids Between Yellow-Seeded and Black-Seeded Rapeseed Varieties.
Published in:
Plants (2223-7747), 2025, v. 14, n. 5, p. 753, doi. 10.3390/plants14050753
By:
- Shen, Shulin;
- Tang, Yunshan;
- Liu, Daiqin;
- Chen, Lulu;
- Zhang, Yi;
- Ye, Kaijie;
- Sun, Fujun;
- Wei, Xingzhi;
- Du, Hai;
- Zhao, Huiyan;
- Li, Jiana;
- Qu, Cunmin;
- Yin, Nengwen
Publication type:
Article
Transcriptome Profiling Reveals the Effects of Rootstocks on Scion Architecture in Malus domestica Borkh Var. 'Harlikar'.
Published in:
Plants (2223-7747), 2025, v. 14, n. 5, p. 696, doi. 10.3390/plants14050696
By:
- Xie, Bin;
- Li, Junhao;
- Zhou, Jiangtao;
- Kang, Guodong;
- Tang, Zhongwen;
- Ma, Xiaojian;
- Li, Xin;
- Wang, Jing;
- Zhang, Yanzhen;
- Chen, Yanhui;
- Yang, Sumiao;
- Cheng, Cungang
Publication type:
Article
Molecular Mechanisms of Gene Expression Regulation in Response to Heat Stress in Hemerocallis fulva.
Published in:
Plants (2223-7747), 2025, v. 14, n. 5, p. 690, doi. 10.3390/plants14050690
By:
- Chu, Boyan;
- Liu, Weixue;
- Li, Jinxia;
- Zhang, Xiaofei;
- Li, Ping
Publication type:
Article
Multiomic Analysis of Environmental Effects and Nitrogen Use Efficiency of Two Potato Varieties Under High Nitrogen Conditions.
Published in:
Plants (2223-7747), 2025, v. 14, n. 5, p. 633, doi. 10.3390/plants14050633
By:
- Gao, Shuo;
- Wei, Guowei;
- Chang, Yuan;
- Yin, Yanbin;
- Wei, Qiaorong;
- Shi, Ying
Publication type:
Article
Identification and validation of hub genes associated with biotic and abiotic stresses by modular gene co-expression analysis in Oryza sativa L.
Published in:
Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-92942-5
By:
- Razalli, Izreen Izzati;
- Abdullah-Zawawi, Muhammad-Redha;
- Zainal Abidin, Rabiatul Adawiah;
- Harun, Sarahani;
- Che Othman, Muhamad Hafiz;
- Ismail, Ismanizan;
- Zainal, Zamri
Publication type:
Article
Integrated multi-omics reveals contrasting epigenetic patterns in leaf and root morphogenesis in Aegilops speltoides.
Published in:
Crop Journal (2095-5421), 2025, v. 13, n. 1, p. 292, doi. 10.1016/j.cj.2024.09.015
By:
- Lingfeng Miao;
- Zhe Chen;
- Lifeng Gao;
- Jizeng Jia;
- Weilong Guo;
- Guangyao Zhao
Publication type:
Article
Dynamic molecular regulation of salt stress responses in maize (Zea mays L.) seedlings.
Published in:
Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1535943
By:
- Maimaiti, Atikaimu;
- Gu, Wei;
- Yu, Diansi;
- Guan, Yuan;
- Qu, Jingtao;
- Qin, Tao;
- Wang, Hui;
- Ren, Jiaojiao;
- Zheng, Hongjian;
- Wu, Penghao
Publication type:
Article
SATB1 in cancer progression and metastasis: mechanisms and therapeutic potential.
Published in:
Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1535929
By:
- Bai, Jinping;
- Yang, Gege;
- Yu, Qi;
- Chi, Qianya;
- Zeng, Xianlu;
- Qi, Wenjing
Publication type:
Article
Identification and validation of neutrophil-related biomarkers in acute-on-chronic liver failure.
Published in:
Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1477342
By:
- Lin, Wei;
- Chen, Yongping;
- Lu, Mingqin;
- Peng, Cheng;
- Chen, Xiang;
- Liu, Xiaoqin;
- Wang, Yunyun
Publication type:
Article
Constitutive overexpression of Qui-Quine Starch gene simultaneously improves starch and protein content in bioengineered cassava (Manihot esculenta Crantz).
Published in:
Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2024.1442324
By:
- Hankoua, Bertrand Bachaumond;
- Diao, Marieme;
- Ligaba-Osena, Ayalew;
- Garcia, Rafael A.;
- Harun, Sarahani;
- Ahlawat, Yogesh K.
Publication type:
Article
A comprehensive prognostic and immunological implications of Gremlin 1 in lung adenocarcinoma.
Published in:
Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1529195
By:
- Li, Hongyan;
- Zhou, Yang;
- Xiao, Jiaqing;
- Liu, Fang
Publication type:
Article
Bioinformatics analysis reveals novel tumor antigens and immune subtypes of skin cutaneous melanoma contributing to mRNA vaccine development.
Published in:
Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1520505
By:
- Yang, Ronghua;
- He, Jia;
- Kang, Deni;
- Chen, Yao;
- Huang, Jie;
- Li, Jiehua;
- Wang, Xinyi;
- Zhou, Sitong
Publication type:
Article
Unveiling novel susceptibility genes and drug targets for basal cell carcinoma by a cross-tissue transcriptome-wide association study.
Published in:
Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02019-y
By:
- Sun, Hong;
- Li, Ling;
- Xin, Xiu;
- Yan, Jingchao;
- Huang, Taomin
Publication type:
Article
Continuous map of early hematopoietic stem cell differentiation across human lifetime.
Published in:
Nature Communications, 2025, v. 16, p. 1, doi. 10.1038/s41467-025-57096-y
By:
- Komic, Hana;
- Schmachtel, Tessa;
- Simoes, Catia;
- Külp, Marius;
- Yu, Weijia;
- Jolly, Adrien;
- Nilsson, Malin S.;
- Gonzalez, Carmen;
- Prosper, Felipe;
- Bonig, Halvard;
- Paiva, Bruno;
- Thorén, Fredrik B.;
- Rieger, Michael A.
Publication type:
Article
MAP17 is a Novel NASH Progression Biomarker Associated with Macrophage Infiltration, Immunotherapy Response, and Oxidative Stress.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 601, doi. 10.2147/JIR.S497737
By:
- Huang, Zhiwei;
- Chen, Jiatong;
- Liu, Shenglu;
- Xiang, Xin;
- Long, Yang;
- Tan, Peng;
- Fu, Wenguang
Publication type:
Article
Integrated Analysis and Validation of Ferroptosis-Related Genes Associated with Ischemia/Reperfusion Injury in Lung Transplantation.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 251, doi. 10.2147/JIR.S489827
By:
- Li, Qingqing;
- Yin, Jing;
- Lin, Qibin;
- He, Jilong;
- Shi, Xiu;
- Nie, Hanxiang
Publication type:
Article
Identification and Validation of Pivotal Genes in Osteoarthritis Combined with WGCNA Analysis.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 1459, doi. 10.2147/JIR.S504717
By:
- Yang, Chengzhuo;
- Chen, Xinhua;
- Liu, Jin;
- Wang, Wenhao;
- Sun, Lihua;
- Xie, Youhong;
- Chang, Qing
Publication type:
Article
ERC-funded grant: cardiac regeneration.
Published in:
European Heart Journal, 2025, v. 46, n. 10, p. 887, doi. 10.1093/eurheartj/ehae873
By:
- Campo, Cristina Villa del;
- Rivero-García, Inés;
- Torres, Miguel
Publication type:
Article
Potential Common Molecular Mechanisms Between Periodontitis and Prostate Cancer: A Network Analysis of Differentially Expressed miRNAs.
Published in:
In Vivo, 2025, v. 39, n. 2, p. 795, doi. 10.21873/invivo.13863
By:
- KANLI, AYLIN;
- SUNNETCI-AKKOYUNLU, DENİZ;
- KULCU-SARIKAYA, NURHAN;
- UGURTAŞ, CANSU;
- AKPINAR, GURLER;
- KASAP, MURAT
Publication type:
Article
Convergent evolution of complex adaptive traits modulates angiogenesis in high-altitude Andean and Himalayan human populations.
Published in:
Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07813-6
By:
- Ferraretti, Giulia;
- Rill, Aina;
- Abondio, Paolo;
- Smith, Kyra;
- Ojeda-Granados, Claudia;
- De Fanti, Sara;
- Alberti, Marta;
- Izzi, Massimo;
- Sherpa, Phurba T.;
- Cocco, Paolo;
- Tiriticco, Massimiliano;
- Di Marcello, Marco;
- Dezi, Agnese;
- Gnecchi-Ruscone, Guido Alberto;
- Natali, Luca;
- Corcelli, Angela;
- Marinelli, Giorgio;
- Garagnani, Paolo;
- Peluzzi, Davide;
- Luiselli, Donata
Publication type:
Article
The CGA1-SNAT regulatory module potentially contributes to cytokinin-mediated melatonin biosynthesis and drought tolerance in wheat.
Published in:
BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06313-3
By:
- Shamloo-Dashtpagerdi, Roohollah;
- Lindlöf, Angelica;
- Aliakbari, Massume
Publication type:
Article
Comparative physiological and co-expression network analysis reveals potential hub genes and adaptive mechanisms responsive to NaCl stress in peanut (Arachis hypogaea L.).
Published in:
BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06311-5
By:
- Zhang, Nan;
- Bai, Baiyi;
- Zuo, Shiyu;
- Zhang, He;
- Ren, Jingyao;
- Lv, Zhenghao;
- Zhou, Dongying;
- Yu, Haiqiu
Publication type:
Article
Prognostic and therapeutic potential of CXCR6 expression on CD8 + T cells in gastric cancer: a retrospective cohort study.
Published in:
BMC Gastroenterology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12876-025-03735-z
By:
- Han, Song-Hee;
- Ju, Mi Ha;
- Pak, Min Gyoung
Publication type:
Article
Multiplexed assays of human disease-relevant mutations reveal UTR dinucleotide composition as a major determinant of RNA stability.
Published in:
eLife, 2025, p. 1, doi. 10.7554/eLife.97682
By:
- Jia-Ying Su;
- Yun-Lin Wang;
- Yu-Tung Hsieh;
- Yu-Chi Chang;
- Cheng-Han Yang;
- YoonSoon Kang;
- Yen-Tsung Huang;
- Chien-Ling Lin
Publication type:
Article
Differential transcript and soluble factor patterns in macrophage/enterocyte-like monolayer co-cultures based on apical or basolateral LPS exposure.
Published in:
Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1527007
By:
- Mazzei, Aurora;
- Cucchiara, Martina;
- Mortara, Lorenzo;
- Bossi, Elena;
- Schiavone, Roberta;
- Verri, Tiziano;
- Bruno, Antonino;
- Barca, Amilcare
Publication type:
Article
EDN1 and NTF3 in keloid pathogenesis: computational and experimental evidence as novel diagnostic biomarkers for fibrosis and inflammation.
Published in:
Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1516451
By:
- Gong, Hui;
- Liu, Jing;
- Chen, Nanji;
- Zhao, Hengguang;
- He, Bailin;
- Zhang, Hongpei;
- Wang, Wenping;
- Tian, Yi
Publication type:
Article
High-throughput microRNA sequencing in the developing branchial arches suggests miR-92b-3p regulation of a cardiovascular gene network.
Published in:
Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1514925
By:
- Goldsworthy, Sian;
- Losa, Marta;
- Bobola, Nicoletta;
- Griffiths-Jones, Sam
Publication type:
Article
Bioinformatics analysis identifies dysregulation of miR-548F-3p and its hub gene in triple-negative breast cancer.
Published in:
Iranian Journal of Basic Medical Sciences, 2025, v. 28, n. 4, p. 434, doi. 10.22038/ijbms.2025.79808.17287
By:
- Behroozi, Samira;
- Salimi, Mahdieh;
- Fard, Najaf Allahyari
Publication type:
Article
Identification and Experimental Verification of Potential Immune Cell-Associated Gene Biomarkers in Human Intervertebral Disc Degeneration.
Published in:
Journal of Pain Research, 2025, v. 18, p. 993, doi. 10.2147/JPR.S505859
By:
- Shi, Wei-Han;
- Zou, Hui-Shuang;
- Wang, Xiang-Yu;
- Lu, Jie;
- Yu, Hua-Qi;
- Zhang, Ping-Ping;
- Huang, Li-Li;
- Chu, Peng-Cheng;
- Liang, Da-Chuan;
- Zhang, Ya-Ning;
- Li, Bin
Publication type:
Article
Role of Aging in Ulcerative Colitis Pathogenesis: A Focus on ETS1 as a Promising Biomarker.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 1839, doi. 10.2147/JIR.S504040
By:
- Ni, Man;
- Peng, Weilong;
- Wang, Xiaoguang;
- Li, Jingui
Publication type:
Article
Integration of Single Cell and Bulk RNA-Sequencing Reveals Key Genes and Immune Cell Infiltration to Construct a Predictive Model and Identify Drug Targets in Endometriosis.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 2783, doi. 10.2147/JIR.S497643
By:
- Zhang, Hanke;
- Fang, Yuqing;
- Luo, Dan;
- Li, Yan-Hui
Publication type:
Article
Identifying Therapeutic Targets and Potential Drugs for Diabetic Retinopathy: Focus on Oxidative Stress and Immune Infiltration.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 2205, doi. 10.2147/JIR.S500214
By:
- Peng, Hongsong;
- Hu, Qiang;
- Zhang, Xue;
- Huang, Jiayang;
- Luo, Shan;
- Zhang, Yiming;
- Jiang, Bo;
- Sun, Dawei
Publication type:
Article
Identification of Five NK Cell-Related Hub Genes in COPD Using Single-Cell RNA Sequencing Analysis.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 2169, doi. 10.2147/JIR.S491298
By:
- Deng, Xiaojie;
- Yang, Xiahui;
- Gan, Zhihua;
- Huang, Huaxing;
- Yang, Jun
Publication type:
Article
Exploration of Hub Genes and Immune Cell Infiltration Characteristics Associated With Spinal Cord Injury in Mice.
Published in:
Journal of Inflammation Research, 2025, v. 18, p. 2613, doi. 10.2147/JIR.S499402
By:
- Chen, Wentao;
- Zhang, Qian;
- Zhang, Zhiwei;
- Ding, Yaping;
- Zhang, Feng;
- Chen, Guo
Publication type:
Article