Works matching IS 14712164 AND DT 2018 AND VI 19

Results: 984

Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5279-4

By:

Li, Yong-Fang;
Zheng, Yun;
Vemireddy, Lakshminarayana R.;
Panda, Sanjib Kumar;
Jose, Smitha;
Ranjan, Alok;
Panda, Piyalee;
Govindan, Ganesan;
Cui, Junxia;
Wei, Kangning;
Yaish, Mahmoud W.;
Naidoo, Gnanambal Charmaine;
Sunkar, Ramanjulu

Publication type:

Article

Gut microbiome changes in overweight male adults following bowel preparation.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5285-6

By:

Chen, Hui-Mei;
Chen, Chung-Chu;
Chen, Chien-Chi;
Wang, Shen-Chih;
Wang, Chun-Lin;
Huang, Chien-Hsun;
Liou, Jong-Shian;
Liu, Ta-Wei;
Peng, Hwei-Ling;
Lin, Feng-Mao;
Liu, Chia-Yuan;
Weng, Shun-Long;
Cheng, Chieh-Jen;
Hung, Yi-Fang;
Liao, Chii-Cherng;
Huang, Hsien-Da

Publication type:

Article

Deep learning for DNase I hypersensitive sites identification.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5283-8

By:

Lyu, Chuqiao;
Wang, Lei;
Zhang, Juhua

Publication type:

Article

A context-free encoding scheme of protein sequences for predicting antigenicity of diverse influenza A viruses.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5282-9

By:

Zhou, Xinrui;
Yin, Rui;
Kwoh, Chee-Keong;
Zheng, Jie

Publication type:

Article

Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5281-x

By:

Gao, Xiaoyang;
Zhang, Xuan;
Meng, Honghu;
Li, Jing;
Zhang, Di;
Liu, Changning

Publication type:

Article

Genotype- and tissue-specific miRNA profiles and their targets in three alfalfa (Medicago sativa L) genotypes.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5280-y

By:

Pokoo, Robert;
Ren, Shuchao;
Wang, Qingyi;
Motes, Christy M.;
Hernandez, Timothy D.;
Ahmadi, Sayvan;
Monteros, Maria J.;
Zheng, Yun;
Sunkar, Ramanjulu

Publication type:

Article

Vaginal microbiome variances in sample groups categorized by clinical criteria of bacterial vaginosis.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5284-7

By:

Chen, Hui-Mei;
Chang, Tzu-Hao;
Lin, Feng-Mao;
Liang, Chao;
Chiu, Chih-Min;
Yang, Tzu-Ling;
Yang, Ting;
Huang, Chia-Yen;
Cheng, Yeong-Nan;
Chang, Yi-An;
Chang, Po-Ya;
Weng, Shun-Long

Publication type:

Article

Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5278-5

By:

Zhang, Lirong;
Xue, Gaogao;
Liu, Junjie;
Li, Qianzhong;
Wang, Yong

Publication type:

Article

Constructing tissue-specific transcriptional regulatory networks via a Markov random field.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5277-6

By:

Ma, Shining;
Jiang, Tao;
Jiang, Rui

Publication type:

Article

A partially function-to-topic model for protein function prediction.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5276-7

By:

Liu, Lin;
Tang, Lin;
Tang, Mingjing;
Zhou, Wei

Publication type:

Article

Identifying sequence features that drive ribosomal association for lncRNA.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5275-8

By:

Zeng, Chao;
Hamada, Michiaki

Publication type:

Article

Reveal cell type-specific regulatory elements and their characterized histone code classes via a hidden Markov model.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5274-9

By:

Wang, Can;
Zhang, Shihua

Publication type:

Article

FKL-Spa-LapRLS: an accurate method for identifying human microRNA-disease association.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5273-x

By:

Jiang, Limin;
Xiao, Yongkang;
Ding, Yijie;
Tang, Jijun;
Guo, Fei

Publication type:

Article

Mining statistically-solid k-mers for accurate NGS error correction.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-5272-y

By:

Zhao, Liang;
Xie, Jin;
Bai, Lin;
Chen, Wen;
Wang, Mingju;
Zhang, Zhonglei;
Wang, Yiqi;
Zhao, Zhe;
Li, Jinyan

Publication type:

Article

Female-specific SNP markers provide insights into a WZ/ZZ sex determination system for mud crabs Scylla paramamosain, S. tranquebarica and S. serrata with a rapid method for genetic sex identification.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5380-8

By:

Shi, Xi;
Waiho, Khor;
Li, Xincang;
Ikhwanuddin, Mhd;
Miao, Guidong;
Lin, Fan;
Zhang, Yueling;
Li, Shengkang;
Zheng, Huaiping;
Liu, Wenhua;
Aweya, Jude Juventus;
Azmie, Ghazali;
Baylon, Juliana C.;
Quinitio, Emilia T.;
Ma, Hongyu

Publication type:

Article

Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5360-z

By:

Pucker, Boas;
Brockington, Samuel F.

Publication type:

Article

Multiple interspecific hybridization and microsatellite mutations provide clonal diversity in the parthenogenetic rock lizard Darevskia armeniaca.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5359-5

By:

Girnyk, Anastasiya E.;
Vergun, Andrey A.;
Semyenova, Seraphima K.;
Guliaev, Andrei S.;
Arakelyan, Marine S.;
Danielyan, Felix D.;
Martirosyan, Irena A.;
Murphy, Robert W.;
Ryskov, Alexey P.

Publication type:

Article

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5348-8

By:

Wang, Weiwen;
Schalamun, Miriam;
Morales-Suarez, Alejandro;
Kainer, David;
Schwessinger, Benjamin;
Lanfear, Robert

Publication type:

Article

Analysis of Dendrobium huoshanense transcriptome unveils putative genes associated with active ingredients synthesis.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5305-6

By:

Yuan, Yingdan;
Yu, Maoyun;
Jia, Zhaohui;
Song, Xue'er;
Liang, Yingquan;
Zhang, Jinchi

Publication type:

Article

Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5334-1

By:

Rahman, Farzana;
Hassan, Mehedi;
Hanano, Abdulsamie;
Fitzpatrick, David A.;
McCarthy, Charley G. P.;
Murphy, Denis J.

Publication type:

Article

Characterization of miRNA profiles in the mammary tissue of dairy cattle in response to heat stress.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5298-1

By:

Qiuling Li;
Chunhong Yang;
Juan Du;
Baogui Zhang;
Ying He;
Qimeng Hu;
Meiru Li;
Yiming Zhang;
Changfa Wang;
Jifeng Zhong

Publication type:

Article

Systematics for types and effects of DNA variations.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5262-0

By:

Vihinen, Mauno

Publication type:

Article

Discerning novel splice junctions derived from RNA-seq alignment: a deep learning approach.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5350-1

By:

Yi Zhang;
Xinan Liu;
MacLeod, James;
Jinze Liu

Publication type:

Article

Genome-wide association study of Mycobacterium avium subspecies Paratuberculosis infection in Chinese Holstein.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5385-3

By:

Yahui Gao;
Jianping Jiang;
Shaohua Yang;
Jie Cao;
Bo Han;
Yachun Wang;
Yi Zhang;
Ying Yu;
Shengli Zhang;
Qin Zhang;
Lingzhao Fang;
Cantrell, Bonnie;
Dongxiao Sun

Publication type:

Article

Genome rearrangements in Escherichia coli during de novo acquisition of resistance to a single antibiotic or two antibiotics successively.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5353-y

By:

Marloes Hoeksema;
Jonker, Martijs J.;
Bel, Keshia;
Brul, Stanley;
ter Kuile, Benno H.

Publication type:

Article

Identification of putative fecundity-related gustatory receptor genes in the brown planthopper Nilaparvata lugens.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5391-5

By:

Kang, Kui;
Yang, Pan;
Chen, Li-E;
Pang, Rui;
Yu, Lu-Jun;
Zhou, Wen-Wu;
Zhu, Zeng-Rong;
Zhang, Wen-Qing

Publication type:

Article

Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5367-5

By:

Li, Jian-Rong;
Liu, Chun-Chi;
Sun, Chuan-Hu;
Chen, Yu-Ting

Publication type:

Article

Comparative analysis of the mitochondrial genomes of oriental spittlebug trible Cosmoscartini: insights into the relationships among closely related taxa.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5365-7

By:

Su, Tianjuan;
He, Bo;
Li, Kui;
Liang, Aiping

Publication type:

Article

Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5364-8

By:

Giacopuzzi, Edoardo;
Gennarelli, Massimo;
Sacco, Chiara;
Filippini, Alice;
Mingardi, Jessica;
Magri, Chiara;
Barbon, Alessandro

Publication type:

Article

Genome-wide identification of SERK genes in apple and analyses of their role in stress responses and growth.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5342-1

By:

Zheng, Liwei;
Ma, Juanjuan;
Mao, Jiangping;
Fan, Sheng;
Zhang, Dong;
Zhao, Caiping;
An, Na;
Han, Mingyu

Publication type:

Article

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn's disease discovered using metagenomic and genomic analyses.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5306-5

By:

Tyakht, Alexander V.;
Manolov, Alexander I.;
Kanygina, Alexandra V.;
Ischenko, Dmitry S.;
Kovarsky, Boris A.;
Popenko, Anna S.;
Pavlenko, Alexander V.;
Elizarova, Anna V.;
Rakitina, Daria V.;
Baikova, Julia P.;
Ladygina, Valentina G.;
Kostryukova, Elena S.;
Karpova, Irina Y.;
Semashko, Tatyana A.;
Larin, Andrei K.;
Grigoryeva, Tatyana V.;
Sinyagina, Mariya N.;
Malanin, Sergei Y.;
Shcherbakov, Petr L.;
Kharitonova, Anastasiya Y.

Publication type:

Article

ACES: a machine learning toolbox for clustering analysis and visualization.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5300-y

By:

Gao, Jiangning;
Sundström, Görel;
Moghadam, Behrooz Torabi;
Zamani, Neda;
Grabherr, Manfred G.

Publication type:

Article

Changes in H3K27ac following lipopolysaccharide stimulation of nasopharyngeal epithelial cells.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5295-4

By:

Borghini, Lisa;
Hibberd, Martin;
Davila, Sonia

Publication type:

Article

Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5245-1

By:

Bochkareva, Olga O.;
Moroz, Elena V.;
Davydov, Iakov I.;
Gelfand, Mikhail S.

Publication type:

Article

Important cardiac transcription factor genes are accompanied by bidirectional long non-coding RNAs.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5233-5

By:

Hori, Yutaro;
Tanimoto, Yoko;
Takahashi, Satoru;
Furukawa, Tetsushi;
Koshiba-Takeuchi, Kazuko;
Takeuchi, Jun K.

Publication type:

Article

ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5249-x

By:

Romagnoli, Dario;
Boccalini, Giulia;
Bonechi, Martina;
Biagioni, Chiara;
Fassan, Paola;
Bertorelli, Roberto;
Sanctis, Veronica De;
Leo, Angelo Di;
Migliaccio, Ilenia;
Malorni, Luca;
Benelli, Matteo

Publication type:

Article

Comparison of reprogramming factor targets reveals both species-specific and conserved mechanisms in early iPSC reprogramming.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5326-1

By:

Fu, Kai;
Chronis, Constantinos;
Soufi, Abdenour;
Bonora, Giancarlo;
Edwards, Miguel;
Smale, Stephen T.;
Zaret, Kenneth S.;
Plath, Kathrin;
Pellegrini, Matteo

Publication type:

Article

High-density SNP linkage map construction and QTL mapping for flavonoid-related traits in a tea plant (Camellia sinensis) using 2b-RAD sequencing.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5291-8

By:

Xu, Li-Yi;
Wang, Li-Yuan;
Wei, Kang;
Tan, Li-Qiang;
Su, Jing-Jing;
Cheng, Hao

Publication type:

Article

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5355-9

By:

Li, Ning;
Bao, Lisui;
Zhou, Tao;
Yuan, Zihao;
Liu, Shikai;
Dunham, Rex;
Li, Yuanning;
Wang, Kun;
Xu, Xiaoyan;
Jin, Yulin;
Zeng, Qifan;
Gao, Sen;
Fu, Qiang;
Liu, Yang;
Yang, Yujia;
Li, Qi;
Meyer, Axel;
Gao, Dongya;
Liu, Zhanjiang

Publication type:

Article

Complete chloroplast genome sequence of Betula platyphylla: gene organization, RNA editing, and comparative and phylogenetic analyses.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5346-x

By:

Wang, Sui;
Yang, Chuanping;
Zhao, Xiyang;
Chen, Su;
Qu, Guan-Zheng

Publication type:

Article

Kinetics of the chromosome 14 microRNA cluster ortholog and its potential role during placental development in the pregnant mare.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5341-2

By:

Dini, Pouya;
Daels, Peter;
Loux, Shavahn C.;
Esteller-Vico, Alejandro;
Carossino, Mariano;
Scoggin, Kirsten E.;
Ball, Barry A.

Publication type:

Article

Power in pairs: assessing the statistical value of paired samples in tests for differential expression.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5236-2

By:

Stevens, John R.;
Herrick, Jennifer S.;
Wolff, Roger K.;
Slattery, Martha L.

Publication type:

Article

Identification and characterization of SSR, SNP and InDel molecular markers from RNA-Seq data of guar (Cyamopsis tetragonoloba, L. Taub.) roots.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5205-9

By:

Thakur, Omika;
Randhawa, Gursharn Singh

Publication type:

Article

Comparative transcriptomic analysis of bovine papillomatosis.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5361-y

By:

Barreto, Débora M.;
Barros, Gerlane S.;
Santos, Lucas A. B. O.;
Soares, Rosilene C.;
Batista, Marcus V. A.

Publication type:

Article

Combining multiple functional annotation tools increases coverage of metabolic annotation.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5221-9

By:

Griesemer, Marc;
Kimbrel, Jeffrey A.;
Zhou, Carol E.;
Navid, Ali;
D'haeseleer, Patrik

Publication type:

Article

Dichotomy in redundant enhancers points to presence of initiators of gene regulation.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5335-0

By:

Song, Wei;
Ovcharenko, Ivan

Publication type:

Article

Multiple trans QTL and one cis-regulatory deletion are associated with the differential expression of cone opsins in African cichlids.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5328-z

By:

Nandamuri, Sri Pratima;
Conte, Matthew A.;
Carleton, Karen L.

Publication type:

Article

Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5296-3

By:

Medina, Clémence;
da Rocha, Martine;
Magliano, Marc;
Raptopoulo, Alizée;
Marteu, Nathalie;
Lebrigand, Kevin;
Abad, Pierre;
Favery, Bruno;
Jaubert-Possamai, Stéphanie

Publication type:

Article

iMGEins: detecting novel mobile genetic elements inserted in individual genomes.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5290-9

By:

Bae, Junwoo;
Lee, Kyeong Won;
Islam, Mohammad Nazrul;
Yim, Hyung-Soon;
Park, Heejin;
Rho, Mina

Publication type:

Article

Accuracy of genomic selection for growth and wood quality traits in two control-pollinated progeny trials using exome capture as the genotyping platform in Norway spruce.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5256-y

By:

Chen, Zhi-Qiang;
Baison, John;
Pan, Jin;
Karlsson, Bo;
Andersson, Bengt;
Westin, Johan;
García-Gil, María Rosario;
Wu, Harry X.

Publication type:

Article