Works matching AU Ishaque, Naveed

Results: 35
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    Multiple Candidate Effectors from the Oomycete Pathogen Hyaloperonospora arabidopsidis Suppress Host Plant Immunity.

    Published in:
    PLoS Pathogens, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.ppat.1002348
    By:
    • Fabro, Georgina;
    • Steinbrenner, Jens;
    • Coates, Mary;
    • Ishaque, Naveed;
    • Baxter, Laura;
    • Studholme, David J.;
    • Körner, Evelyn;
    • Allen, Rebecca L.;
    • Piquerez, Sophie J. M.;
    • Rougon-Cardoso, Alejandra;
    • Greenshields, David;
    • Lei, Rita;
    • Badel, Jorge L.;
    • Caillaud, Marie-Cecile;
    • Sohn, Kee-Hoon;
    • Van den Ackerveken, Guido;
    • Parker, Jane E.;
    • Beynon, Jim;
    • Jones, Jonathan D. G.
    Publication type:
    Article
    4

    Robust methylation-based classification of brain tumours using nanopore sequencing.

    Published in:
    Neuropathology & Applied Neurobiology, 2023, v. 49, n. 1, p. 1, doi. 10.1111/nan.12856
    By:
    • Kuschel, Luis P.;
    • Hench, Jürgen;
    • Frank, Stephan;
    • Bratic Hench, Ivana;
    • Girard, Elodie;
    • Blanluet, Maud;
    • Masliah-Planchon, Julien;
    • Misch, Martin;
    • Onken, Julia;
    • Czabanka, Marcus;
    • Dongsheng Yuan;
    • Lukassen, Sören;
    • Karau, Philipp;
    • Ishaque, Naveed;
    • Hain, Elisabeth G.;
    • Heppner, Frank;
    • Idbaih, Ahmed;
    • Behr, Nikolaus;
    • Harms, Christoph;
    • Capper, David
    Publication type:
    Article
    5

    The genomic and transcriptional landscape of primary central nervous system lymphoma.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30050-y
    By:
    • Radke, Josefine;
    • Ishaque, Naveed;
    • Koll, Randi;
    • Gu, Zuguang;
    • Schumann, Elisa;
    • Sieverling, Lina;
    • Uhrig, Sebastian;
    • Hübschmann, Daniel;
    • Toprak, Umut H.;
    • López, Cristina;
    • Hostench, Xavier Pastor;
    • Borgoni, Simone;
    • Juraeva, Dilafruz;
    • Pritsch, Fabienne;
    • Paramasivam, Nagarajan;
    • Balasubramanian, Gnana Prakash;
    • Schlesner, Matthias;
    • Sahay, Shashwat;
    • Weniger, Marc;
    • Pehl, Debora
    Publication type:
    Article
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    Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children.

    Published in:
    Molecular Systems Biology, 2016, v. 12, n. 3, p. n/a, doi. 10.15252/msb.20156520
    By:
    • Bauer, Tobias;
    • Trump, Saskia;
    • Ishaque, Naveed;
    • Thürmann, Loreen;
    • Gu, Lei;
    • Bauer, Mario;
    • Bieg, Matthias;
    • Gu, Zuguang;
    • Weichenhan, Dieter;
    • Mallm, Jan‐Philipp;
    • Röder, Stefan;
    • Herberth, Gunda;
    • Takada, Eiko;
    • Mücke, Oliver;
    • Winter, Marcus;
    • Junge, Kristin M;
    • Grützmann, Konrad;
    • Rolle‐Kampczyk, Ulrike;
    • Wang, Qi;
    • Lawerenz, Christian
    Publication type:
    Article
    8

    Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL.

    Published in:
    Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-00724-7
    By:
    • Wierzbinska, Justyna A.;
    • Toth, Reka;
    • Ishaque, Naveed;
    • Rippe, Karsten;
    • Mallm, Jan-Philipp;
    • Klett, Lara C.;
    • Mertens, Daniel;
    • Zenz, Thorsten;
    • Hielscher, Thomas;
    • Seifert, Marc;
    • Küppers, Ralf;
    • Assenov, Yassen;
    • Lutsik, Pavlo;
    • Stilgenbauer, Stephan;
    • Roessner, Philipp M.;
    • Seiffert, Martina;
    • Byrd, John;
    • Oakes, Christopher C.;
    • Plass, Christoph;
    • Lipka, Daniel B.
    Publication type:
    Article
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    Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks.

    Published in:
    Molecular Systems Biology, 2019, v. 15, n. 5, p. N.PAG, doi. 10.15252/msb.20188339
    By:
    • Mallm, Jan‐Philipp;
    • Iskar, Murat;
    • Ishaque, Naveed;
    • Klett, Lara C;
    • Kugler, Sabrina J;
    • Muino, Jose M;
    • Teif, Vladimir B;
    • Poos, Alexandra M;
    • Großmann, Sebastian;
    • Erdel, Fabian;
    • Tavernari, Daniele;
    • Koser, Sandra D;
    • Schumacher, Sabrina;
    • Brors, Benedikt;
    • König, Rainer;
    • Remondini, Daniel;
    • Vingron, Martin;
    • Stilgenbauer, Stephan;
    • Lichter, Peter;
    • Zapatka, Marc
    Publication type:
    Article
    11

    Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation.

    Published in:
    Scientific Reports, 2016, p. 28616, doi. 10.1038/srep28616
    By:
    • Trump, Saskia;
    • Bieg, Matthias;
    • Gu, Zuguang;
    • Thürmann, Loreen;
    • Bauer, Tobias;
    • Bauer, Mario;
    • Ishaque, Naveed;
    • Röder, Stefan;
    • Gu, Lei;
    • Herberth, Gunda;
    • Lawerenz, Christian;
    • Borte, Michael;
    • Schlesner, Matthias;
    • Plass, Christoph;
    • Diessl, Nicolle;
    • Eszlinger, Markus;
    • Mücke, Oliver;
    • Elvers, Horst-Dietrich;
    • Wissenbach, Dirk K.;
    • von Bergen, Martin
    Publication type:
    Article
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    Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08069-x
    By:
    • Haller, Florian;
    • Bieg, Matthias;
    • Will, Rainer;
    • Körner, Cindy;
    • Weichenhan, Dieter;
    • Bott, Alexander;
    • Ishaque, Naveed;
    • Lutsik, Pavlo;
    • Moskalev, Evgeny A.;
    • Mueller, Sarina K.;
    • Bähr, Marion;
    • Woerner, Angelika;
    • Kaiser, Birgit;
    • Scherl, Claudia;
    • Haderlein, Marlen;
    • Kleinheinz, Kortine;
    • Fietkau, Rainer;
    • Iro, Heinrich;
    • Eils, Roland;
    • Hartmann, Arndt
    Publication type:
    Article
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    Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07041-z
    By:
    • Ishaque, Naveed;
    • Abba, Mohammed L.;
    • Hauser, Christine;
    • Patil, Nitin;
    • Paramasivam, Nagarajan;
    • Huebschmann, Daniel;
    • Leupold, Jörg Hendrik;
    • Balasubramanian, Gnana Prakash;
    • Kleinheinz, Kortine;
    • Toprak, Umut H.;
    • Hutter, Barbara;
    • Benner, Axel;
    • Shavinskaya, Anna;
    • Zhou, Chan;
    • Gu, Zuguang;
    • Kerssemakers, Jules;
    • Marx, Alexander;
    • Moniuszko, Marcin;
    • Kozlowski, Miroslaw;
    • Reszec, Joanna
    Publication type:
    Article
    18

    5'isomiR-183-5p|+2 elicits tumor suppressor activity in a negative feedback loop with E2F1.

    Published in:
    Journal of Experimental & Clinical Cancer Research (17569966), 2022, v. 41, n. 1, p. 1, doi. 10.1186/s13046-022-02380-8
    By:
    • Li, Xiaoya;
    • Michels, Birgitta Elisabeth;
    • Tosun, Oyku Ece;
    • Jung, Janine;
    • Kappes, Jolane;
    • Ibing, Susanne;
    • Nataraj, Nishanth Belugali;
    • Sahay, Shashwat;
    • Schneider, Martin;
    • Wörner, Angelika;
    • Becki, Corinna;
    • Ishaque, Naveed;
    • Feuerbach, Lars;
    • Heßling, Bernd;
    • Helm, Dominic;
    • Will, Rainer;
    • Yarden, Yosef;
    • Müller-Decker, Karin;
    • Wiemann, Stefan;
    • Körner, Cindy
    Publication type:
    Article
    19

    Directed acyclic graph for epidemiological studies in childhood food allergy: Construction, user's guide, and application.

    Published in:
    Allergy, 2024, v. 79, n. 8, p. 2051, doi. 10.1111/all.16025
    By:
    • Peng, Zhuoxin;
    • Apfelbacher, Christian;
    • Brandstetter, Susanne;
    • Eils, Roland;
    • Kabesch, Michael;
    • Lehmann, Irina;
    • Trump, Saskia;
    • Wellmann, Sven;
    • Genuneit, Jon;
    • Steffens, Britta;
    • Naveed, Ishaque;
    • Thierfelder‐Matuszak, Jasmin;
    • Dekena, Johanna;
    • Weigt, Julia;
    • Gerhardinger, Katharina;
    • Matzner, Laura;
    • Hoerold, Madlen;
    • König, Mara;
    • Messingschlager, Marey;
    • Häberle, Marvin
    Publication type:
    Article
    20

    Global hypomethylation in childhood asthma identified by genome‐wide DNA‐methylation sequencing preferentially affects enhancer regions.

    Published in:
    Allergy, 2023, v. 78, n. 6, p. 1489, doi. 10.1111/all.15658
    By:
    • Thürmann, Loreen;
    • Klös, Matthias;
    • Mackowiak, Sebastian D.;
    • Bieg, Matthias;
    • Bauer, Tobias;
    • Ishaque, Naveed;
    • Messingschlager, Marey;
    • Herrmann, Carl;
    • Röder, Stefan;
    • Bauer, Mario;
    • Schäuble, Sascha;
    • Faessler, Erik;
    • Hahn, Udo;
    • Weichenhan, Dieter;
    • Mücke, Oliver;
    • Plass, Christoph;
    • Borte, Michael;
    • von Mutius, Erika;
    • Stangl, Gabriele I.;
    • Lauener, Roger
    Publication type:
    Article
    21

    Cell segmentation-free inference of cell types from in situ transcriptomics data.

    Published in:
    Nature Communications, 2021, v. 12, p. 1, doi. 10.1038/s41467-021-23807-4
    By:
    • Park, Jeongbin;
    • Choi, Wonyl;
    • Tiesmeyer, Sebastian;
    • Long, Brian;
    • Borm, Lars E.;
    • Garren, Emma;
    • Nguyen, Thuc Nghi;
    • Tasic, Bosiljka;
    • Codeluppi, Simone;
    • Graf, Tobias;
    • Schlesner, Matthias;
    • Stegle, Oliver;
    • Eils, Roland;
    • Ishaque, Naveed
    Publication type:
    Article
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    Cell segmentation-free inference of cell types from in situ transcriptomics data.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23807-4
    By:
    • Park, Jeongbin;
    • Choi, Wonyl;
    • Tiesmeyer, Sebastian;
    • Long, Brian;
    • Borm, Lars E.;
    • Garren, Emma;
    • Nguyen, Thuc Nghi;
    • Tasic, Bosiljka;
    • Codeluppi, Simone;
    • Graf, Tobias;
    • Schlesner, Matthias;
    • Stegle, Oliver;
    • Eils, Roland;
    • Ishaque, Naveed
    Publication type:
    Article
    24

    Cell segmentation-free inference of cell types from in situ transcriptomics data.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23807-4
    By:
    • Park, Jeongbin;
    • Choi, Wonyl;
    • Tiesmeyer, Sebastian;
    • Long, Brian;
    • Borm, Lars E.;
    • Garren, Emma;
    • Nguyen, Thuc Nghi;
    • Tasic, Bosiljka;
    • Codeluppi, Simone;
    • Graf, Tobias;
    • Schlesner, Matthias;
    • Stegle, Oliver;
    • Eils, Roland;
    • Ishaque, Naveed
    Publication type:
    Article
    25

    Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21247-8
    By:
    • Hartlieb, Sabine A.;
    • Sieverling, Lina;
    • Nadler-Holly, Michal;
    • Ziehm, Matthias;
    • Toprak, Umut H.;
    • Herrmann, Carl;
    • Ishaque, Naveed;
    • Okonechnikov, Konstantin;
    • Gartlgruber, Moritz;
    • Park, Young-Gyu;
    • Wecht, Elisa Maria;
    • Savelyeva, Larissa;
    • Henrich, Kai-Oliver;
    • Rosswog, Carolina;
    • Fischer, Matthias;
    • Hero, Barbara;
    • Jones, David T. W.;
    • Pfaff, Elke;
    • Witt, Olaf;
    • Pfister, Stefan M.
    Publication type:
    Article
    26

    <italic>MEST</italic> mediates the impact of prenatal bisphenol A exposure on long-term body weight development.

    Published in:
    Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0478-z
    By:
    • Junge, Kristin M.;
    • Leppert, Beate;
    • Jahreis, Susanne;
    • Wissenbach, Dirk K.;
    • Feltens, Ralph;
    • Grützmann, Konrad;
    • Thürmann, Loreen;
    • Bauer, Tobias;
    • Ishaque, Naveed;
    • Schick, Matthias;
    • Bewerunge-Hudler, Melanie;
    • Röder, Stefan;
    • Bauer, Mario;
    • Schulz, Angela;
    • Borte, Michael;
    • Landgraf, Kathrin;
    • Körner, Antje;
    • Kiess, Wieland;
    • von Bergen, Martin;
    • Stangl, Gabriele I.
    Publication type:
    Article
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    Succession of transiently active tumor-initiating cell clones in human pancreatic cancer xenografts.

    Published in:
    EMBO Molecular Medicine, 2017, v. 9, n. 7, p. 918, doi. 10.15252/emmm.201607354
    By:
    • Ball, Claudia R;
    • Oppel, Felix;
    • Ehrenberg, Karl Roland;
    • Dubash, Taronish D;
    • Dieter, Sebastian M;
    • Hoffmann, Christopher M;
    • Abel, Ulrich;
    • Herbst, Friederike;
    • Koch, Moritz;
    • Werner, Jens;
    • Bergmann, Frank;
    • Ishaque, Naveed;
    • Schmidt, Manfred;
    • Kalle, Christof;
    • Scholl, Claudia;
    • Fröhling, Stefan;
    • Brors, Benedikt;
    • Weichert, Wilko;
    • Weitz, Jürgen;
    • Glimm, Hanno
    Publication type:
    Article
    29

    Small intestinal neuroendocrine tumors lack early genomic drivers, acquire DNA repair defects and harbor hallmarks of low REST expression.

    Published in:
    Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-01912-4
    By:
    • Bolduan, Felix;
    • Müller-Bötticher, Niklas;
    • Debnath, Olivia;
    • Eichhorn, Ines;
    • Giesecke, Yvonne;
    • Wetzel, Alexandra;
    • Sahay, Shashwat;
    • Zemojtel, Tomasz;
    • Jaeger, Marten;
    • Ungethuem, Ute;
    • Roderburg, Christoph;
    • Kunze, Catarina Alisa;
    • Lehmann, Annika;
    • Horst, David;
    • Tacke, Frank;
    • Eils, Roland;
    • Wiedenmann, Bertram;
    • Sigal, Michael;
    • Ishaque, Naveed
    Publication type:
    Article
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    Mutational patterns and regulatory networks in epigenetic subgroups of meningioma.

    Published in:
    Acta Neuropathologica, 2019, v. 138, n. 2, p. 295, doi. 10.1007/s00401-019-02008-w
    By:
    • Paramasivam, Nagarajan;
    • Hübschmann, Daniel;
    • Toprak, Umut H;
    • Ishaque, Naveed;
    • Neidert, Marian;
    • Schrimpf, Daniel;
    • Stichel, Damian;
    • Reuss, David;
    • Sievers, Philipp;
    • Reinhardt, Annekathrin;
    • Wefers, Annika K.;
    • Jones, David T. W.;
    • Gu, Zuguang;
    • Werner, Johannes;
    • Uhrig, Sebastian;
    • Wirsching, Hans-Georg;
    • Schick, Matthias;
    • Bewerunge-Hudler, Melanie;
    • Beck, Katja;
    • Brehmer, Stephanie
    Publication type:
    Article
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