Works matching IS 14712164 AND DT 2016 AND VI 17

Results: 1045

Genome-wide association and replication study of anti-tuberculosis drugs-induced liver toxicity.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3078-3

By:

Petros, Zelalem;
Lee, Ming-Ta Michael;
Atsushi Takahashi;
Yanfei Zhang;
Yimer, Getnet;
Habtewold, Abiy;
Amogne, Wondwossen;
Aderaye, Getachew;
Schuppe-Koistinen, Ina;
Taisei Mushiroda;
Makonnen, Eyasu;
Michiaki Kubo;
Aklillu, Eleni

Publication type:

Article

Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2889-6

By:

Drouin, Alexandre;
Giguère, Sébastien;
Déraspe, Maxime;
Marchand, Mario;
Tyers, Michael;
Loo, Vivian G.;
Bourgault, Anne-Marie;
Laviolette, François;
Corbeil, Jacques

Publication type:

Article

Genetic mapping of Pinus flexilis major gene (Cr4) for resistance to white pine blister rust using transcriptome-based SNP genotyping.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3079-2

By:

Jun-Jun Liu;
Schoettle, Anna W.;
Sniezko, Richard A.;
Sturrock, Rona N.;
Zamany, Arezoo;
Williams, Holly;
Ha, Amanda;
Chan, Danelle;
Danchok, Bob;
Savin, Douglas P.;
Kegley, Angelia

Publication type:

Article

Erratum to: Genotype distribution-based inference of collective effects in genomewide association studies: insights to agerelated macular degeneration disease mechanism.

Published in:: 2016
Publication type:: Correction Notice

AP-SKAT: highly-efficient genome-wide rare variant association test.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3094-3

By:

Takanori Hasegawa;
Kaname Kojima;
Yosuke Kawai;
Kazuharu Misawa;
Takahiro Mimori;
Masao Nagasaki

Publication type:

Article

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3083-6

By:

Mora-Ortiz, Marina;
Swain, Martin T.;
Vickers, Martin J.;
Hegarty, Matthew J.;
Kelly, Rhys;
Smith, Lydia M. J.;
Skøt, Leif

Publication type:

Article

A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3082-7

By:

Wang, Tingting;
Chen, Yi-Ping Phoebe;
Bowman, Phil J.;
Goddard, Michael E.;
Hayes, Ben J.

Publication type:

Article

The application of transcriptomic data in the authentication of beef derived from contrasting production systems.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2851-7

By:

Sweeney, Torres;
Lejeune, Alex;
Moloney, Aidan P.;
Monahan, Frank J.;
Gettigan, Paul Mc;
Downey, Gerard;
Park, Stephen D. E.;
Ryan, Marion T.

Publication type:

Article

Comparative genomic analysis between newly sequenced Brucella suis Vaccine Strain S2 and the Virulent Brucella suis Strain 1330.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3076-5

By:

Dong-dong Di;
Hai Jiang;
Li-li Tian;
Jing-li Kang;
Wen Zhang;
Xin-ping Yi;
Feng Ye;
Qi Zhong;
Bo Ni;
You-yu He;
Lin Xia;
Yao Yu;
Bu-yun Cui;
Xiang Mao;
Wei-xing Fan

Publication type:

Article

Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3002-x

By:

Rao, Rajas M.;
Pasha, Shaik Naseer;
Sowdhamini, Ramanathan

Publication type:

Article

Efficient generation and reversion of chromosomal translocations using CRISPR/Cas technology.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3084-5

By:

Lekomtsev, Sergey;
Aligianni, Sofia;
Lapao, Ana;
Bürckstümmer, Tilmann

Publication type:

Article

Non-linear interactions between candidate genes of myocardial infarction revealed in mRNA expression profiles.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3075-6

By:

Hartmann, Katherine;
Seweryn, Michał;
Handleman, Samuel K.;
Rempała, Grzegorz A.;
Sadee, Wolfgang

Publication type:

Article

Allyl-isothiocyanate treatment induces a complex transcriptional reprogramming including heat stress, oxidative stress and plant defence responses in Arabidopsis thaliana.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3039-x

By:

Kissen, Ralph;
Øverby, Anders;
Winge, Per;
Bones, Atle M.

Publication type:

Article

Genome-wide identification and characterisation of HOT regions in the human genome.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3077-4

By:

Hao Li;
Feng Liu;
Chao Ren;
Xiaochen Bo;
Wenjie Shu

Publication type:

Article

Generation of different sizes and classes of small RNAs in barley is locus, chromosome and/or cultivar-dependent.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3023-5

By:

Hackenberg, Michael;
Rueda, Antonio;
Gustafson, Perry;
Langridge, Peter;
Bu-Jun Shi

Publication type:

Article

A missense mutation in solute carrier family 12, member 1 (SLC12A1) causes hydrallantois in Japanese Black cattle.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3035-1

By:

Shinji Sasaki;
Kiyotoshi Hasegawa;
Tomoko Higashi;
Yutaka Suzuki;
Sumio Sugano;
Yasuaki Yasuda;
Yoshikazu Sugimoto

Publication type:

Article

Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3016-4

By:

Becker, Noémie S.;
Margos, Gabriele;
Blum, Helmut;
Krebs, Stefan;
Graf, Alexander;
Lane, Robert S.;
Castillo-Ramírez, Santiago;
Sing, Andreas;
Fingerle, Volker

Publication type:

Article

Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.).

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3081-8

By:

Mengmeng Lu;
Krutovsky, Konstantin V.;
Nelson, C. Dana;
Koralewski, Tomasz E.;
Byram, Thomas D.;
Loopstra, Carol A.

Publication type:

Article

Recombination-driven generation of the largest pathogen repository of antigen variants in the protozoan Trypanosoma cruzi.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3037-z

By:

Weatherly, D. Brent;
Duo Peng;
Tarleton, Rick L.

Publication type:

Article

Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration.

Published in:

BMC Genomics, 2016, v. 17, p. 1

By:

Arneson, Douglas;
Bhattacharya, Anindya;
Le Shu;
Mäkinen, Ville-Petteri;
Xia Yang

Publication type:

Article

Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3042-2

By:

Kiessling, Michael K.;
Schuierer, Sven;
Stertz, Silke;
Beibel, Martin;
Bergling, Sebastian;
Knehr, Judith;
Carbone, Walter;
de Vallière, Cheryl;
Tchinda, Joelle;
Bouwmeester, Tewis;
Seuwen, Klaus;
Rogler, Gerhard;
Roma, Guglielmo

Publication type:

Article

Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2951-4

By:

Hassan, Afreenish;
Naz, Anam;
Obaid, Ayesha;
Zafar Paracha, Rehan;
Naz, Kanwal;
Mehwish Awan, Faryal;
Aun Muhmmad, Syed;
Ahmed Janjua, Hussnain;
Ahmad, Jamil;
Ali, Amjad

Publication type:

Article

Retraction Note to: Gene expression analysis indicates CB1 receptor upregulation in the hippocampus and neurotoxic effects in the frontal cortex 3 weeks after single-dose MDMA administration in Dark Agouti rats.

Published in:: 2016
Publication type:: Correction Notice

RNA-Seq analysis of seasonal and individual variation in blood transcriptomes of healthy managed bottlenose dolphins.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3020-8

By:

Morey, Jeanine S.;
Neely, Marion G.;
Lunardi, Denise;
Anderson, Paul E.;
Schwacke, Lori H.;
Campbell, Michelle;
Van Dolah, Frances M.

Publication type:

Article

Structure and variation of the mitochondrial genome of fishes.

Published in:

BMC Genomics, 2016, v. 17, p. 719, doi. 10.1186/s12864-016-3054-y

By:

Satoh, Takashi P.;
Masaki Miya;
Kohji Mabuchi;
Mutsumi Nishida

Publication type:

Article

Erratum to: Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization.

Published in:: 2016
Publication type:: Correction Notice

Erratum to: Chromosome doubling to overcome the chrysanthemum cross barrier based on insight from transcriptomic and proteomic analyses.

Published in:: 2016
Publication type:: Correction Notice

The green ash transcriptome and identification of genes responding to abiotic and biotic stresses.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3052-0

By:

Lane, Thomas;
Best, Teodora;
Zembower, Nicole;
Davitt, Jack;
Henry, Nathan;
Yi Xu;
Koch, Jennifer;
Haiying Liang;
McGraw, John;
Schuster, Stephan;
Donghwan Shim;
Coggeshall, Mark V.;
Carlson, John E.;
Staton, Margaret E.

Publication type:

Article

RNAseq analysis of heart tissue from mice treated with atenolol and isoproterenol reveals a reciprocal transcriptional response.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3059-6

By:

Prunotto, Andrea;
Stevenson, Brian J.;
Berthonneche, Corinne;
Schüpfer, Fanny;
Beckmann, Jacques S.;
Maurer, Fabienne;
Bergmann, Sven

Publication type:

Article

A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3027-1

By:

Schaffer, Amos A.;
Bazarsky, Michael;
Levy, Karine;
Chalifa-Caspi, Vered;
Gat, Uri

Publication type:

Article

Whole genome sequence analysis indicates recent diversification of mammalassociated Campylobacter fetus and implicates a genetic factor associated with H<sub>2</sub>S production.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3058-7

By:

van der Graaf-van Bloois, Linda;
Duim, Birgitta;
Miller, William G.;
Forbes, Ken J.;
Wagenaar, Jaap A.;
Zomer, Aldert

Publication type:

Article

Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3053-z

By:

Peralta, Humberto;
Aguilar, Alejandro;
Díaz, Rafael;
Mora, Yolanda;
Martínez-Batallar, Gabriel;
Salazar, Emmanuel;
Vargas-Lagunas, Carmen;
Martínez, Esperanza;
Encarnación, Sergio;
Mora, Jaime

Publication type:

Article

Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3046-y

By:

Santos, M. Emília;
Baldo, Laura;
Langyu Gu1,;
Boileau, Nicolas;
Musilova, Zuzana;
Salzburger, Walter

Publication type:

Article

High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3048-9

By:

Fuzita, Felipe J.;
Pinkse, Martijn W. H.;
Patane, José S. L.;
Verhaert, Peter D. E. M.;
Lopes, Adriana R.

Publication type:

Article

In vivo Ebola virus infection leads to a strong innate response in circulating immune cells.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3060-0

By:

Caballero, Ignacio S.;
Honko, Anna N.;
Gire, Stephen K.;
Winnicki, Sarah M.;
Melé, Marta;
Gerhardinger, Chiara;
Lin, Aaron E.;
Rinn, John L.;
Sabeti, Pardis C.;
Hensley, Lisa E.;
Connor, John H.

Publication type:

Article

Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3055-x

By:

Taylor-Brown, Alyce;
Bachmann, Nathan L.;
Borel, Nicole;
Polkinghorne, Adam

Publication type:

Article

Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3049-8

By:

Utsunomiya, Adam T. H.;
Santos, Daniel J. A.;
Boison, Solomon A.;
Utsunomiya, Yuri T.;
Milanesi, Marco;
Bickhart, Derek M.;
Ajmone-Marsan, Paolo;
Sölkner, Johann;
Garcia, José F.;
da Fonseca, Ricardo;
da Silva, Marcos V. G. B.

Publication type:

Article

The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3047-x

By:

Phillips, Wendy S.;
Brown, Amanda M. V.;
Howe, Dana K.;
Peetz, Amy B.;
Blok, Vivian C.;
Denver, Dee R.;
Zasada, Inga A.

Publication type:

Article

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3030-6

By:

Shepard, Samuel S.;
Meno, Sarah;
Bahl, Justin;
Wilson, Malania M.;
Barnes, John;
Neuhaus, Elizabeth

Publication type:

Article

Comparative genomics reveals Lysinibacillus sphaericus group comprises a novel species.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3056-9

By:

Gómez-Garzón, Camilo;
Hernández-Santana, Alejandra;
Dussán, Jenny

Publication type:

Article

Low genetic diversity among historical and contemporary clinical isolates of felid herpesvirus 1.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3050-2

By:

Vaz, Paola K.;
Job, Natalie;
Horsington, Jacquelyn;
Ficorilli, Nino;
Studdert, Michael J.;
Hartley, Carol A.;
Gilkerson, James R.;
Browning, Glenn F.;
Devlin, Joanne M.

Publication type:

Article

An analytical workflow for accurate variant discovery in highly divergent regions.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3045-z

By:

Shulan Tian;
Huihuang Yan;
Neuhauser, Claudia;
Slager, Susan L.

Publication type:

Article

Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3044-0

By:

Steenwyk, Jacob L.;
Soghigian, John S.;
Perfect, John R.;
Gibbons, John G.

Publication type:

Article

Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3041-3

By:

Xiao Zhang;
Hua Zhang;
Lujiang Li;
Hai Lan;
Zhiyong Ren;
Liu, Dan;
Ling Wu;
Hailan Liu;
Jaqueth, Jennifer;
Bailin Li;
Guangtang Pan;
Shibin Gao

Publication type:

Article

Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP.

Published in:

BMC Genomics, 2016, v. 17, p. 539, doi. 10.1186/s12864-016-2827-7

By:

Perea, Claudia;
De La Hoz, Juan Fernando;
Cruz, Daniel Felipe;
Lobaton, Juan David;
Izquierdo, Paulo;
Quintero, Juan Camilo;
Raatz, Bodo;
Duitama, Jorge

Publication type:

Article

Finishing monkeypox genomes from short reads: assembly analysis and a neural network method.

Published in:

BMC Genomics, 2016, v. 17, p. 527, doi. 10.1186/s12864-016-2826-8

By:

Kun Zhao;
Wohlhueter, Robert M.;
Yu Li

Publication type:

Article

A full-body transcriptome and proteome resource for the European common carp.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3038-y

By:

Kolder, I. C. R. M.;
van der Plas-Duivesteijn, S. J.;
Tan, G.;
Wiegertjes, G. F.;
Forlenza, M.;
Guler, A. T.;
Travin, D. Y.;
Nakao, M.;
Moritomo, T.;
Irnazarow, I.;
den Dunnen, J. T.;
Anvar, S. Y.;
Jansen, H. J.;
Dirks, R. P.;
Palmblad, M.;
Lenhard, B.;
Henkel, C. V.;
Spaink, H. P.

Publication type:

Article

Self-regulation of functional pathways by motifs inside the disordered tails of beta-catenin.

Published in:

BMC Genomics, 2016, v. 17, p. 513, doi. 10.1186/s12864-016-2825-9

By:

Bi Zhao;
Bin Xue

Publication type:

Article

Genome-wide analysis of lectin receptorlike kinases in Populus.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3026-2

By:

Yongil Yang;
Labbé, Jessy;
Muchero, Wellington;
Xiaohan Yang;
Jawdy, Sara S.;
Kennedy, Megan;
Johnson, Jenifer;
Sreedasyam, Avinash;
Schmutz, Jeremy;
Tuskan, Gerald A.;
Jin-Gui Chen

Publication type:

Article

SPAI: an interactive platform for indel analysis.

Published in:

BMC Genomics, 2016, v. 17, p. 505, doi. 10.1186/s12864-016-2824-x

By:

Shabbir Hasan, Mohammad;
Liqing Zhang

Publication type:

Article