Works matching IS 1471-2105 AND VI 26 AND IP 1 AND DT 2025
Results: 102
PRED-LD: efficient imputation of GWAS summary statistics.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06119-y
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- Article
Phoenics: a novel statistical approach for longitudinal metabolomic pathway analysis.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06118-z
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DeBasher: a flow-based programming bash extension for the implementation of complex and interactive workflows with stateful processes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06108-1
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Redefining the high variable genes by optimized LOESS regression with positive ratio.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06112-5
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- Article
M01 tool: an automated, comprehensive computational tool for generating small molecule-peptide hybrids and docking them into curated protein structures.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06120-5
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- Article
Improving data interpretability with new differential sample variance gene set tests.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06117-0
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- Article
DTreePred: an online viewer based on machine learning for pathogenicity prediction of genomic variants.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06113-4
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- Article
DeepMethyGene: a deep-learning model to predict gene expression using DNA methylations.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06115-2
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Minimum uncertainty as Bayesian network model selection principle.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06104-5
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Bayesian compositional generalized linear mixed models for disease prediction using microbiome data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06114-3
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Goistrat: gene-of-interest-based sample stratification for the evaluation of functional differences.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06109-0
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optRF: Optimising random forest stability by determining the optimal number of trees.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06097-1
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- Article
DconnLoop: a deep learning model for predicting chromatin loops based on multi-source data integration.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06092-6
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- Article
optRF: Optimising random forest stability by determining the optimal number of trees.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06097-1
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- Article
Amogel: a multi-omics classification framework using associative graph neural networks with prior knowledge for biomarker identification: AMOGEL: a multi-omics classification...: C. Y. Tan et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06111-6
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DMoVGPE: predicting gut microbial associated metabolites profiles with deep mixture of variational Gaussian Process experts.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06110-7
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SCITUNA: single-cell data integration tool using network alignment.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06087-3
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- Article
SequenceCraft: machine learning-based resource for exploratory analysis of RNA-cleaving deoxyribozymes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-024-06019-7
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- Article
Methylmap: visualization of modified nucleotides for large cohort sizes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06106-3
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- Article
ChIPbinner: an R package for analyzing broad histone marks binned in uniform windows from ChIP-Seq or CUT&RUN/TAG data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06103-6
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- Article
Uncovering latent biological function associations through gene set embeddings.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06100-9
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Towards a standard benchmark for phenotype-driven variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06105-4
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- Article
Deep-ProBind: binding protein prediction with transformer-based deep learning model.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06101-8
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- Article
Prediction of drug's anatomical therapeutic chemical (ATC) code by constructing biological profiles of ATC codes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06102-7
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- Article
Validating a web application's use of genetic distance to determine helminth species boundaries and aid in identification.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06098-0
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- Article
Transfer learning for accelerated failure time model with microarray data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06056-w
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- Article
FPGA-based accelerator for adaptive banded event alignment in nanopore sequencing data analysis.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-024-06011-1
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- Article
A clinical knowledge graph-based framework to prioritize candidate genes for facilitating diagnosis of Mendelian diseases and rare genetic conditions.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06096-2
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SNPeBoT: a tool for predicting transcription factor allele specific binding.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06094-4
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Constructing multilayer PPI networks based on homologous proteins and integrating multiple PageRank to identify essential proteins.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06093-5
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GoldPolish-target: targeted long-read genome assembly polishing.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06091-7
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- Article
UTAP2: an enhanced user-friendly transcriptome and epigenome analysis pipeline.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06090-8
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- Article
An alignment-free method for phylogeny estimation using maximum likelihood: An alignment-free method for phylogeny estimation...: T. Zahin et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06080-w
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- Article
TRain: T-cell receptor automated immunoinformatics.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06074-8
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- Article
Robust phylogenetic tree-based microbiome association test using repeatedly measured data for composition bias.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-024-06002-2
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- Article
Cross-validation for training and testing co-occurrence network inference algorithms: Cross-validation for training and testing co-occurrence network...: D. Agyapong et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06083-7
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- Article
A distribution-guided Mapper algorithm.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06085-5
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- Article
Dual-approach co-expression analysis framework (D-CAF) enables identification of novel circadian co-regulation from multi-omic timeseries data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06089-1
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- Article
ProToDeviseR: an automated protein topology scheme generator.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06088-2
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- Article
PyPropel: a Python-based tool for efficiently processing and characterising protein data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06079-3
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- Article
Comparative Assessment of Protein Large Language Models for Enzyme Commission Number Prediction.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06081-9
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- Article
Analyzing microbiome data with taxonomic misclassification using a zero-inflated Dirichlet-multinomial model: Microbiome misclassification: M. D. Koslovsky.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06078-4
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Combining single-cell ATAC and RNA sequencing for supervised cell annotation: Multi-omic supervised annotation: J. Gill et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06084-6
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goloco: a web application to create genome scale information from surprisingly small experiments.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06070-y
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- Article
scFTAT: a novel cell annotation method integrating FFT and transformer.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06061-z
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- Publication type:
- Article
Estimation of mosaic loss of Y chromosome cell fraction with genotyping arrays lacking coverage in the pseudoautosomal region.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06076-6
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- Article
BHCox: Bayesian heredity-constrained Cox proportional hazards models for detecting gene-environment interactions.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06077-5
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- Article
MFCADTI: improving drug-target interaction prediction by integrating multiple feature through cross attention mechanism.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06075-7
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- Article
A Dirichlet-multinomial mixed model for determining differential abundance of mutational signatures.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06055-x
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- Article
Harnessing pre-trained models for accurate prediction of protein-ligand binding affinity.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06064-w
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- Article