Works matching IS 14712105 AND DT 2022 AND VI 22

Results: 41

Beware to ignore the rare: how imputing zero-values can improve the quality of 16S rRNA gene studies results.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 15, p. 1, doi. 10.1186/s12859-022-04587-0

By:

Baruzzo, Giacomo;
Patuzzi, Ilaria;
Di Camillo, Barbara

Publication type:

Article

A data management infrastructure for the integration of imaging and omics data in life sciences.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 15, p. 1, doi. 10.1186/s12859-022-04584-3

By:

Kuhn Cuellar, Luis;
Friedrich, Andreas;
Gabernet, Gisela;
de la Garza, Luis;
Fillinger, Sven;
Seyboldt, Adrian;
Koch, Tobias;
zur Oven-Krockhaus, Sven;
Wanke, Friederike;
Richter, Sandra;
Thaiss, Wolfgang M.;
Horger, Marius;
Malek, Nisar;
Harter, Klaus;
Bitzer, Michael;
Nahnsen, Sven

Publication type:

Article

The challenges of explainable AI in biomedical data science.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04368-1

By:

Henry Han;
Xiangrong Liu

Publication type:

Article

Drug–target interaction prediction via multiple classifcation strategies.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04366-3

By:

Qing Ye;
Xiaolong Zhang;
Xiaoli Lin

Publication type:

Article

Using entropy‑driven amplifer circuit response to build nonlinear model under the infuence of Lévy jump.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04331-0

By:

Hao Fu;
Hui Lv;
Qiang Zhang

Publication type:

Article

Multi‑view manifold regularized compact low‑rank representation for cancer samples clustering on multi‑omics data.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04220-6

By:

Juan Wang;
Cong‑Hai Lu;
Xiang‑Zhen Kong;
Ling‑Yun Dai;
Shasha Yuan;
Xiaofeng Zhang

Publication type:

Article

A truncated nuclear norm and graph‑Laplacian regularized low‑rank representation method for tumor clustering and gene selection.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04333-y

By:

Qi Liu

Publication type:

Article

A novel gene functional similarity calculation model by utilizing the specificity of terms and relationships in gene ontology.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-022-04557-6

By:

Tian, Zhen;
Fang, Haichuan;
Ye, Yangdong;
Zhu, Zhenfeng

Publication type:

Article

Detect the early-warning signals of diseases based on signaling pathway perturbations on a single sample.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04286-2

By:

Huo, Yanhao;
Zhao, Geng;
Ruan, Luoshan;
Xu, Peng;
Fang, Gang;
Zhang, Fengyue;
Bao, Zhenshen;
Li, Xin

Publication type:

Article

Predicting Ca<sup>2+</sup> and Mg<sup>2+</sup> ligand binding sites by deep neural network algorithm.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04250-0

By:

Sun, Kai;
Hu, Xiuzhen;
Feng, Zhenxing;
Wang, Hongbin;
Lv, Haotian;
Wang, Ziyang;
Zhang, Gaimei;
Xu, Shuang;
You, Xiaoxiao

Publication type:

Article

MetaCRS: unsupervised clustering of contigs with the recursive strategy of reducing metagenomic dataset's complexity.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04227-z

By:

Jiang, Zhongjun;
Li, Xiaobo;
Guo, Lijun

Publication type:

Article

Identifying biomarkers for breast cancer by gene regulatory network rewiring.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-021-04225-1

By:

Wang, Yijuan;
Liu, Zhi-Ping

Publication type:

Article

EndHiC: assemble large contigs into chromosome-level scaffolds using the Hi-C links from contig ends.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-05087-x

By:

Wang, Sen;
Wang, Hengchao;
Jiang, Fan;
Wang, Anqi;
Liu, Hangwei;
Zhao, Hanbo;
Yang, Boyuan;
Xu, Dong;
Zhang, Yan;
Fan, Wei

Publication type:

Article

Pattern recognition of topologically associating domains using deep learning.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-05075-1

By:

Yang, Jhen Yuan;
Chang, Jia-Ming

Publication type:

Article

Automatic identifying and counting blood cells in smear images by using single shot detector and Taguchi method.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-05074-2

By:

Chen, Yao-Mei;
Tsai, Jinn-Tsong;
Ho, Wen-Hsien

Publication type:

Article

ReCSAI: recursive compressed sensing artificial intelligence for confocal lifetime localization microscopy.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-05071-5

By:

Reinhard, Sebastian;
Helmerich, Dominic A.;
Boras, Dominik;
Sauer, Markus;
Kollmannsberger, Philip

Publication type:

Article

A Poisson reduced-rank regression model for association mapping in sequencing data.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-05054-6

By:

Fitzgerald, Tiana;
Jones, Andrew;
Engelhardt, Barbara E.

Publication type:

Article

An unbiased kinship estimation method for genetic data analysis.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-05082-2

By:

Jiang, Wei;
Zhang, Xiangyu;
Li, Siting;
Song, Shuang;
Zhao, Hongyu

Publication type:

Article

Identification of multiplicatively acting modulatory mutational signatures in cancer.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-05060-8

By:

Kičiatovas, Dovydas;
Guo, Qingli;
Kailas, Miika;
Pesonen, Henri;
Corander, Jukka;
Kaski, Samuel;
Pitkänen, Esa;
Mustonen, Ville

Publication type:

Article

RSAP-Net: joint optic disc and cup segmentation with a residual spatial attention path module and MSRCR-PT pre-processing algorithm.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-05058-2

By:

Jiang, Yun;
Ma, Zeqi;
Wu, Chao;
Zhang, Zequn;
Yan, Wei

Publication type:

Article

Extract antibody and antigen names from biomedical literature.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-04993-4

By:

Dinh, Thuy Trang;
Vo-Chanh, Trang Phuong;
Nguyen, Chau;
Huynh, Viet Quoc;
Vo, Nam;
Nguyen, Hoang Duc

Publication type:

Article

Identification of fish species through tRNA-based primer design.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-04717-8

By:

Wu, Ting-Hui;
Yang, Cing-Han;
Pai, Tun-Wen;
Ho, Li-Ping;
Wu, Jen-Leih;
Chou, Hsin-Yiu

Publication type:

Article

Optimal construction of a functional interaction network from pooled library CRISPR fitness screens.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-05078-y

By:

Gheorghe, Veronica;
Hart, Traver

Publication type:

Article

iDMET: network-based approach for integrating differential analysis of cancer metabolomics.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-05068-0

By:

Matsuta, Rira;
Yamamoto, Hiroyuki;
Tomita, Masaru;
Saito, Rintaro

Publication type:

Article

Deep learning and multi-omics approach to predict drug responses in cancer.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-04964-9

By:

Wang, Conghao;
Lye, Xintong;
Kaalia, Rama;
Kumar, Parvin;
Rajapakse, Jagath C.

Publication type:

Article

Early effects of gene duplication on the robustness and phenotypic variability of gene regulatory networks.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-05067-1

By:

Posadas-García, Yuridia S.;
Espinosa-Soto, Carlos

Publication type:

Article

MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 10, p. 1, doi. 10.1186/s12859-022-05061-7

By:

Gupta, Ankit;
Malwe, Aditya S.;
Srivastava, Gopal N.;
Thoudam, Parikshit;
Hibare, Keshav;
Sharma, Vineet K.

Publication type:

Article

Evaluation of word embedding models to extract and predict surgical data in breast cancer.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-05038-6

By:

Sgroi, Giuseppe;
Russo, Giulia;
Maglia, Anna;
Catanuto, Giuseppe;
Barry, Peter;
Karakatsanis, Andreas;
Rocco, Nicola;
Pappalardo, Francesco

Publication type:

Article

MLM-based typographical error correction of unstructured medical texts for named entity recognition.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-05035-9

By:

Lee, Eun Byul;
Heo, Go Eun;
Choi, Chang Min;
Song, Min

Publication type:

Article

Modeling and cleaning RNA-seq data significantly improve detection of differentially expressed genes.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-05023-z

By:

Deyneko, Igor V.;
Mustafaev, Orkhan N.;
Tyurin, Alexander А.;
Zhukova, Ksenya V.;
Varzari, Alexander;
Goldenkova-Pavlova, Irina V.

Publication type:

Article

lmerSeq: an R package for analyzing transformed RNA-Seq data with linear mixed effects models.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-05019-9

By:

Vestal, Brian E.;
Wynn, Elizabeth;
Moore, Camille M.

Publication type:

Article

INFLECT: an R-package for cytometry cluster evaluation using marker modality.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-05018-w

By:

Verhoeff, Jan;
Abeln, Sanne;
Garcia-Vallejo, Juan J.

Publication type:

Article

Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets using SVAFotate.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-05008-y

By:

Nicholas, Thomas J.;
Cormier, Michael J.;
Quinlan, Aaron R.

Publication type:

Article

Identification of the cuproptosis-related molecular subtypes and an immunotherapy prognostic model in hepatocellular carcinoma.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-04997-0

By:

Zhang, Li;
Xu, Jingwei;
Chu, Xiufeng;
Zhang, Hongqiao;
Yao, Xueyuan;
Zhang, Jian;
Guo, Yanwei

Publication type:

Article

Matrix factorization for the reconstruction of cervical cancer screening histories and prediction of future screening results.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 14, p. 1, doi. 10.1186/s12859-022-04949-8

By:

Langberg, Geir Severin R. E.;
Stapnes, Mikal;
Nygård, Jan F.;
Nygård, Mari;
Grasmair, Markus;
Naumova, Valeriya

Publication type:

Article

Identifying genes associated with brain volumetric differences through tissue specific transcriptomic inference from GWAS summary data.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-04947-w

By:

Mai, Hung;
Bao, Jingxuan;
Thompson, Paul M.;
Kim, Dokyoon;
Shen, Li

Publication type:

Article

APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-04939-w

By:

Fahmi, Naima Ahmed;
Ahmed, Khandakar Tanvir;
Chang, Jae-Woong;
Nassereddeen, Heba;
Fan, Deliang;
Yong, Jeongsik;
Zhang, Wei

Publication type:

Article

pHisPred: a tool for the identification of histidine phosphorylation sites by integrating amino acid patterns and properties.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-04938-x

By:

Zhao, Jian;
Zhuang, Minhui;
Liu, Jingjing;
Zhang, Meng;
Zeng, Cong;
Jiang, Bin;
Wu, Jing;
Song, Xiaofeng

Publication type:

Article

Identifying health related occupations of Twitter users through word embedding and deep neural networks.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-04933-2

By:

Zainab, Kazi;
Srivastava, Gautam;
Mago, Vijay

Publication type:

Article

A novel hybrid framework for metabolic pathways prediction based on the graph attention network.

Published in:

BMC Bioinformatics, 2022, v. 22, p. 1, doi. 10.1186/s12859-022-04856-y

By:

Yang, Zhihui;
Liu, Juan;
Shah, Hayat Ali;
Feng, Jing

Publication type:

Article

DeepWalk based method to predict lncRNA-miRNA associations via lncRNA-miRNA-disease-protein-drug graph.

Published in:

BMC Bioinformatics, 2022, v. 22, n. 12, p. 1, doi. 10.1186/s12859-022-04579-0

By:

Yang, Long;
Li, Li-Ping;
Yi, Hai-Cheng

Publication type:

Article