Works matching IS 14712105 AND DT 2018 AND VI 19

Results: 537

miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 179, doi. 10.1186/s12859-018-2531-5

By:

Xu, Taosheng;
Su, Ning;
Liu, Lin;
Zhang, Junpeng;
Wang, Hongqiang;
Zhang, Weijia;
Gui, Jie;
Yu, Kui;
Li, Jiuyong;
Le, Thuc Duy

Publication type:

Article

A latent allocation model for the analysis of microbial composition and disease.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 171, doi. 10.1186/s12859-018-2530-6

By:

Abe, Ko;
Hirayama, Masaaki;
Ohno, Kinji;
Shimamura, Teppei

Publication type:

Article

Computational prediction of plasma protein binding of cyclic peptides from small molecule experimental data using sparse modeling techniques.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 157, doi. 10.1186/s12859-018-2529-z

By:

Tajimi, Takashi;
Wakui, Naoki;
Yanagisawa, Keisuke;
Yoshikawa, Yasushi;
Ohue, Masahito;
Akiyama, Yutaka

Publication type:

Article

Classifying early and late mild cognitive impairment stages of Alzheimer's disease by fusing default mode networks extracted with multiple seeds.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 147, doi. 10.1186/s12859-018-2528-0

By:

Pei, Shengbing;
Guan, Jihong;
Zhou, Shuigeng

Publication type:

Article

PDRLGB: precise DNA-binding residue prediction using a light gradient boosting machine.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 135, doi. 10.1186/s12859-018-2527-1

By:

Deng, Lei;
Pan, Juan;
Xu, Xiaojie;
Yang, Wenyi;
Liu, Chuyao;
Liu, Hui

Publication type:

Article

Constructing a database for the relations between CNV and human genetic diseases via systematic text mining.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 125, doi. 10.1186/s12859-018-2526-2

By:

Yang, Xi;
Song, Zhuo;
Wu, Chengkun;
Wang, Wei;
Li, Gen;
Zhang, Wei;
Wu, Lingqian;
Lu, Kai

Publication type:

Article

Predicting protein-protein interactions using high-quality non-interacting pairs.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 105, doi. 10.1186/s12859-018-2525-3

By:

Zhang, Long;
Yu, Guoxian;
Guo, Maozu;
Wang, Jun

Publication type:

Article

A benchmark study of sequence alignment methods for protein clustering.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 95, doi. 10.1186/s12859-018-2524-4

By:

Wang, Yingying;
Wu, Hongyan;
Cai, Yunpeng

Publication type:

Article

Convolutional neural network based on SMILES representation of compounds for detecting chemical motif.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 83, doi. 10.1186/s12859-018-2523-5

By:

Hirohara, Maya;
Saito, Yutaka;
Koda, Yuki;
Sato, Kengo;
Sakakibara, Yasubumi

Publication type:

Article

DWNN-RLS: regularized least squares method for predicting circRNA-disease associations.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 73, doi. 10.1186/s12859-018-2522-6

By:

Yan, Cheng;
Wang, Jianxin;
Wu, Fang-Xiang

Publication type:

Article

Estimating heterogeneous treatment effect by balancing heterogeneity and fitness.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 61, doi. 10.1186/s12859-018-2521-7

By:

Zhang, Weijia;
Le, Thuc Duy;
Liu, Lin;
Li, Jiuyong

Publication type:

Article

Predicting adverse drug reactions of combined medication from heterogeneous pharmacologic databases.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 49, doi. 10.1186/s12859-018-2520-8

By:

Zheng, Yi;
Peng, Hui;
Zhang, Xiaocai;
Zhao, Zhixun;
Yin, Jie;
Li, Jinyan

Publication type:

Article

Single-cell gene expression analysis reveals β-cell dysfunction and deficit mechanisms in type 2 diabetes.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 37, doi. 10.1186/s12859-018-2519-1

By:

Ma, Lichun;
Zheng, Jie

Publication type:

Article

Identification of pre-microRNAs by characterizing their sequence order evolution information and secondary structure graphs.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 25, doi. 10.1186/s12859-018-2518-2

By:

Ma, Yuanlin;
Yu, Zuguo;
Han, Guosheng;
Li, Jinyan;
Anh, Vo

Publication type:

Article

In silico design of MHC class I high binding affinity peptides through motifs activation map.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 13, doi. 10.1186/s12859-018-2517-3

By:

Xiao, Zhoujian;
Zhang, Yuwei;
Yu, Runsheng;
Chen, Yin;
Jiang, Xiaosen;
Wang, Ziwei;
Li, Shuaicheng

Publication type:

Article

DeepM6ASeq: prediction and characterization of m6A-containing sequences using deep learning.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 1, doi. 10.1186/s12859-018-2516-4

By:

Zhang, Yiqian;
Hamada, Michiaki

Publication type:

Article

hoDCA: higher order direct-coupling analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2583-6

By:

Schmidt, Michael;
Hamacher, Kay

Publication type:

Article

Time-lagged Ordered Lasso for network inference.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2558-7

By:

Nguyen, Phan;
Braun, Rosemary

Publication type:

Article

Predicting adverse drug reactions through interpretable deep learning framework.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 1, doi. 10.1186/s12859-018-2544-0

By:

Dey, Sanjoy;
Luo, Heng;
Fokoue, Achille;
Hu, Jianying;
Zhang, Ping

Publication type:

Article

iMEGES: integrated mental-disorder GEnome score by deep neural network for prioritizing the susceptibility genes for mental disorders in personal genomes.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 95, doi. 10.1186/s12859-018-2469-7

By:

Khan, Atlas;
Liu, Qian;
Wang, Kai

Publication type:

Article

Large-scale mining disease comorbidity relationships from post-market drug adverse events surveillance data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 85, doi. 10.1186/s12859-018-2468-8

By:

Zheng, Chunlei;
Xu, Rong

Publication type:

Article

A multitask bi-directional RNN model for named entity recognition on Chinese electronic medical records.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 75, doi. 10.1186/s12859-018-2467-9

By:

Chowdhury, Shanta;
Dong, Xishuang;
Qian, Lijun;
Li, Xiangfang;
Guan, Yi;
Yang, Jinfeng;
Yu, Qiubin

Publication type:

Article

Using natural language processing and machine learning to identify breast cancer local recurrence.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 65, doi. 10.1186/s12859-018-2466-x

By:

Zeng, Zexian;
Espino, Sasa;
Roy, Ankita;
Li, Xiaoyu;
Khan, Seema A.;
Clare, Susan E.;
Jiang, Xia;
Neapolitan, Richard;
Luo, Yuan

Publication type:

Article

Application of transfer learning for cancer drug sensitivity prediction.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 51, doi. 10.1186/s12859-018-2465-y

By:

Dhruba, Saugato Rahman;
Rahman, Raziur;
Matlock, Kevin;
Ghosh, Souparno;
Pal, Ranadip

Publication type:

Article

Reconstructing high-resolution chromosome three-dimensional structures by Hi-C complex networks.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 39, doi. 10.1186/s12859-018-2464-z

By:

Liu, Tong;
Wang, Zheng

Publication type:

Article

DLAD4U: deriving and prioritizing disease lists from PubMed literature.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 29, doi. 10.1186/s12859-018-2463-0

By:

Shen, Junhui;
Vasaikar, Suhas;
Zhang, Bing

Publication type:

Article

Evaluation of top-down mass spectral identification with homologous protein sequences.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 21, doi. 10.1186/s12859-018-2462-1

By:

Li, Ziwei;
He, Bo;
Kou, Qiang;
Wang, Zhe;
Wu, Si;
Liu, Yunlong;
Feng, Weixing;
Liu, Xiaowen

Publication type:

Article

A new insight into underlying disease mechanism through semi-parametric latent differential network model.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 5, doi. 10.1186/s12859-018-2461-2

By:

He, Yong;
Ji, Jiadong;
Xie, Lei;
Zhang, Xinsheng;
Xue, Fuzhong

Publication type:

Article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.

Published in:

2018

By:

Liu, Xiaoming;
Xie, Lei;
Wu, Zhijin;
Wang, Kai;
Zhao, Zhongming;
Ruan, Jianhua;
Zhi, Degui

Publication type:

Proceeding

Web-based design and analysis tools for CRISPR base editing.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2585-4

By:

Hwang, Gue-Ho;
Park, Jeongbin;
Lim, Kayeong;
Kim, Sunghyun;
Yu, Jihyeon;
Yu, Eunchong;
Kim, Sang-Tae;
Eils, Roland;
Kim, Jin-Soo;
Bae, Sangsu

Publication type:

Article

SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2577-4

By:

Zhao, Dejian;
Zheng, Deyou

Publication type:

Article

Degeneracy and genetic assimilation in RNA evolution.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2497-3

By:

Rezazadegan, Reza;
Reidys, Christian

Publication type:

Article

MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2574-7

By:

Xu, Jingting;
Liu, Shimeng;
Yin, Ping;
Bulun, Serdar;
Dai, Yang

Publication type:

Article

Capturing context-specific regulation in molecular interaction networks.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2513-7

By:

Rush, Stephen T. A.;
Repsilber, Dirk

Publication type:

Article

Fast and scalable neural embedding models for biomedical sentence classification.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2496-4

By:

Agibetov, Asan;
Blagec, Kathrin;
Xu, Hong;
Samwald, Matthias

Publication type:

Article

FELLA: an R package to enrich metabolomics data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2487-5

By:

Picart-Armada, Sergio;
Fernández-Albert, Francesc;
Vinaixa, Maria;
Yanes, Oscar;
Perera-Lluna, Alexandre

Publication type:

Article

Bidirectional long short-term memory with CRF for detecting biomedical event trigger in FastText semantic space.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 59, doi. 10.1186/s12859-018-2543-1

By:

Wang, Yan;
Wang, Jian;
Lin, Hongfei;
Tang, Xiwei;
Zhang, Shaowu;
Li, Lishuang

Publication type:

Article

Rapid analysis of metagenomic data using signature-based clustering.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 79, doi. 10.1186/s12859-018-2540-4

By:

Chappell, Timothy;
Geva, Shlomo;
Hogan, James M.;
Huygens, Flavia;
Rathnayake, Irani U.;
Rudd, Stephen;
Kelly, Wayne;
Perrin, Dimitri

Publication type:

Article

Detection and visualization of complex structural variants from long reads.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 67, doi. 10.1186/s12859-018-2539-x

By:

Stephens, Zachary;
Wang, Chen;
Iyer, Ravishankar K.;
Kocher, Jean-Pierre

Publication type:

Article

An SVM-based method for assessment of transcription factor-DNA complex models.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 49, doi. 10.1186/s12859-018-2538-y

By:

Corona, Rosario I.;
Sudarshan, Sanjana;
Aluru, Srinivas;
Guo, Jun-tao

Publication type:

Article

Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 37, doi. 10.1186/s12859-018-2537-z

By:

Zhu, Xianchao;
Shen, Xianjun;
Jiang, Xingpeng;
Wei, Kaiping;
He, Tingting;
Ma, Yuanyuan;
Liu, Jiaqi;
Hu, Xiaohua

Publication type:

Article

MicroRNA dysregulational synergistic network: discovering microRNA dysregulatory modules across subtypes in non-small cell lung cancers.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 25, doi. 10.1186/s12859-018-2536-0

By:

Tran, Nhat;
Abhyankar, Vinay;
Nguyen, KyTai;
Weidanz, Jon;
Gao, Jean

Publication type:

Article

Sequence-based bacterial small RNAs prediction using ensemble learning strategies.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 13, doi. 10.1186/s12859-018-2535-1

By:

Tang, Guifeng;
Shi, Jingwen;
Wu, Wenjian;
Yue, Xiang;
Zhang, Wen

Publication type:

Article

Biomedical semantic indexing by deep neural network with multi-task learning.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 1, doi. 10.1186/s12859-018-2534-2

By:

Du, Yongping;
Pan, Yunpeng;
Wang, Chencheng;
Ji, Junzhong

Publication type:

Article

Scalable deep text comprehension for Cancer surveillance on high-performance computing.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 99, doi. 10.1186/s12859-018-2511-9

By:

Qiu, John X.;
Yoon, Hong-Jun;
Srivastava, Kshitij;
Watson, Thomas P.;
Blair Christian, J.;
Ramanathan, Arvind;
Wu, Xiao C.;
Fearn, Paul A.;
Tourassi, Georgia D.

Publication type:

Article

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 81, doi. 10.1186/s12859-018-2510-x

By:

Ozik, Jonathan;
Collier, Nicholson;
Wozniak, Justin M.;
Macal, Charles;
Cockrell, Chase;
Friedman, Samuel H.;
Ghaffarizadeh, Ahmadreza;
Heiland, Randy;
An, Gary;
Macklin, Paul

Publication type:

Article

Predicting tumor cell line response to drug pairs with deep learning.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 71, doi. 10.1186/s12859-018-2509-3

By:

Xia, Fangfang;
Shukla, Maulik;
Brettin, Thomas;
Garcia-Cardona, Cristina;
Cohn, Judith;
Allen, Jonathan E.;
Maslov, Sergei;
Holbeck, Susan L.;
Doroshow, James H.;
Evrard, Yvonne A.;
Stahlberg, Eric A.;
Stevens, Rick L.

Publication type:

Article

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 59, doi. 10.1186/s12859-018-2508-4

By:

Wozniak, Justin M.;
Jain, Rajeev;
Balaprakash, Prasanna;
Ozik, Jonathan;
Collier, Nicholson T.;
Bauer, John;
Xia, Fangfang;
Brettin, Thomas;
Stevens, Rick;
Mohd-Yusof, Jamaludin;
Cardona, Cristina Garcia;
Essen, Brian Van;
Baughman, Matthew

Publication type:

Article

Deep clustering of protein folding simulations.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 47, doi. 10.1186/s12859-018-2507-5

By:

Bhowmik, Debsindhu;
Gao, Shang;
Young, Michael T.;
Ramanathan, Arvind

Publication type:

Article

High-throughput binding affinity calculations at extreme scales.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 33, doi. 10.1186/s12859-018-2506-6

By:

Dakka, Jumana;
Turilli, Matteo;
Wright, David W.;
Zasada, Stefan J.;
Balasubramanian, Vivek;
Wan, Shunzhou;
Coveney, Peter V.;
Jha, Shantenu

Publication type:

Article