Works matching IS 14712105 AND DT 2017 AND VI 18

Results: 584

Identification and characterization of conserved lncRNAs in human and rat brain.

Published in:

BMC Bioinformatics, 2017, v. 18, p. N.PAG, doi. 10.1186/s12859-017-1890-7

By:

Li, Dan;
Yang, Mary Qu

Publication type:

Article

A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-2000-6

By:

Wickland, Daniel P.;
Battu, Gopal;
Hudson, Karen A.;
Diers, Brian W.;
Hudson, Matthew E.

Publication type:

Article

Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1997-x

By:

Youngmahn Han;
Dongsup Kim

Publication type:

Article

Improved high-dimensional prediction with Random Forests by the use of co-data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1993-1

By:

te Beest, Dennis E.;
Mes, Steven W.;
Wilting, Saskia M.;
Brakenhoff, Ruud H.;
van de Wiel, Mark A.

Publication type:

Article

16SPIP: a comprehensive analysis pipeline for rapid pathogen detection in clinical samples based on 16S metagenomic sequencing.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 255, doi. 10.1186/s12859-017-1975-3

By:

Jiaojiao Miao;
Na Han;
Yujun Qiang;
Tingting Zhang;
Xiuwen Li;
Wen Zhang

Publication type:

Article

CORNAS: coverage-dependent RNA-Seq analysis of gene expression data without biological replicates.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 243, doi. 10.1186/s12859-017-1974-4

By:

Low, Joel Z. B.;
Tsung Fei Khang;
Tammi, Martti T.

Publication type:

Article

GTZ: a fast compression and cloud transmission tool optimized for FASTQ files.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 233, doi. 10.1186/s12859-017-1973-5

By:

Yuting Xing;
Gen Li;
Zhenguo Wang;
Bolun Feng;
Zhuo Song;
Chengkun Wu

Publication type:

Article

CNN-BLPred: a Convolutional neural network based predictor for â-Lactamases (BL) and their classes.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 221, doi. 10.1186/s12859-017-1972-6

By:

White, Clarence;
Ismail, Hamid D.;
Hiroto Saigo;
KC, Dukka B.

Publication type:

Article

A sparse autoencoder-based deep neural network for protein solvent accessibility and contact number prediction.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 211, doi. 10.1186/s12859-017-1971-7

By:

Lei Deng;
Chao Fan;
Zhiwen Zeng

Publication type:

Article

2D-EM clustering approach for highdimensional data through folding feature vectors.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 195, doi. 10.1186/s12859-017-1970-8

By:

Sharma, Alok;
Kamola, Piotr J.;
Tatsuhiko Tsunoda

Publication type:

Article

Refine gene functional similarity network based on interaction networks.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 183, doi. 10.1186/s12859-017-1969-1

By:

Zhen Tian;
Maozu Guo;
Chunyu Wang;
Xiaoyan Liu;
Shiming Wang

Publication type:

Article

Novel human microbe-disease association prediction using network consistency projection.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 173, doi. 10.1186/s12859-017-1968-2

By:

Wenzheng Bao;
Zhichao Jiang;
De-Shuang Huang

Publication type:

Article

CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 161, doi. 10.1186/s12859-017-1967-3

By:

Herath, Damayanthi;
Sen-Lin Tang;
Tandon, Kshitij;
Ackland, David;
Halgamuge, Saman Kumara

Publication type:

Article

Automated classification and characterization of the mitotic spindle following knockdown of a mitosis-related protein.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 149, doi. 10.1186/s12859-017-1966-4

By:

Khushi, Matloob;
Dean, Imraan M.;
Teber, Erdahl T.;
Chircop, Megan;
Arthur, Jonathan W.;
Flores-Rodriguez, Neftali

Publication type:

Article

Divisive hierarchical maximum likelihood clustering.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 139, doi. 10.1186/s12859-017-1965-5

By:

Sharma, Alok;
López, Yosvany;
Tatsuhiko Tsunoda

Publication type:

Article

An improved discriminative filter bank selection approach for motor imagery EEG signal classification using mutual information.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 125, doi. 10.1186/s12859-017-1964-6

By:

Kumar, Shiu;
Sharma, Alok;
Tatsuhiko Tsunoda

Publication type:

Article

MultiDCoX: Multi-factor analysis of differential co-expression.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 111, doi. 10.1186/s12859-017-1963-7

By:

Liany, Herty;
Rajapakse, Jagath C.;
Karuturi, R. Krishna Murthy

Publication type:

Article

Dependency-based long short term memory network for drug-drug interaction extraction.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 99, doi. 10.1186/s12859-017-1962-8

By:

Wei Wang;
Xi Yang;
Canqun Yang;
Xiaowei Guo;
Xiang Zhang;
Chengkun Wu

Publication type:

Article

Combining agent based-models and virtual screening techniques to predict the best citrus-derived vaccine adjuvants against human papilloma virus.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 87, doi. 10.1186/s12859-017-1961-9

By:

Pennisi, Marzio;
Russo, Giulia;
Ravalli, Silvia;
Pappalardo, Francesco

Publication type:

Article

Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server.

Published in:

2017

By:

Kyoungyeul Lee;
Minho Lee;
Dongsup Kim

Publication type:

Web Site Review

Identifying term relations cross different gene ontology categories.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 67, doi. 10.1186/s12859-017-1959-3

By:

Jiajie Peng;
Honggang Wang;
Junya Lu;
Weiwei Hui;
Yadong Wang;
Xuequn Shang

Publication type:

Article

The node-weighted Steiner tree approach to identify elements of cancer-related signaling pathways.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 53, doi. 10.1186/s12859-017-1958-4

By:

Yahui Sun;
Chenkai Ma;
Halgamuge, Saman

Publication type:

Article

Pharmacophore anchor models of flaviviral NS3 proteases lead to drug repurposing for DENV infection.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 39, doi. 10.1186/s12859-017-1957-5

By:

Pathak, Nikhil;
Mei-Ling Lai;
Wen-Yu Chen;
Betty-Wu Hsieh;
Guann-Yi Yu;
Jinn-Moon Yang

Publication type:

Article

R3D-BLAST2: an improved search tool for similar RNA 3D substructures.

Published in:

2017

By:

Ching-Yu Yen;
Jian-Cheng Lin;
Kun-Tze Chen;
Chin Lung Lu

Publication type:

Product Review

Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 19, doi. 10.1186/s12859-017-1955-7

By:

Hardianto, Ari;
Yusuf, Muhammad;
Fei Liu;
Ranganathan, Shoba

Publication type:

Article

Automatic plankton image classification combining multiple view features via multiple kernel learning.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1954-8

By:

Haiyong Zheng;
Ruchen Wang;
Zhibin Yu;
Nan Wang;
Zhaorui Gu;
Bing Zheng

Publication type:

Article

Scaling bioinformatics applications on HPC.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 163, doi. 10.1186/s12859-017-1902-7

By:

Mikailov, Mike;
Fu-Jyh Luo;
Barkley, Stuart;
Valleru, Lohit;
Whitney, Stephen;
Zhichao Liu;
Thakkar, Shraddha;
Weida Tong;
Petrick, Nicholas

Publication type:

Article

Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 155, doi. 10.1186/s12859-017-1901-8

By:

Quang Tran;
Pham, Diem-Trang;
Phan, Vinhthuy

Publication type:

Article

dBBQs: dataBase of Bacterial Quality scores.

Published in:

2017

By:

Wanchai, Visanu;
Patumcharoenpol, Preecha;
Nookaew, Intawat;
Ussery, David

Publication type:

Product Review

CUFID-query: accurate network querying through random walk based network flow estimation.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 133, doi. 10.1186/s12859-017-1899-y

By:

Hyundoo Jeong;
Xiaoning Qian;
Byung-Jun Yoon

Publication type:

Article

Deep learning architectures for multi-label classification of intelligent health risk prediction.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 121, doi. 10.1186/s12859-017-1898-z

By:

Maxwell, Andrew;
Runzhi Li;
Bei Yang;
Heng Weng;
Aihua Ou;
Huixiao Hong;
Zhaoxian Zhou;
Ping Gong;
Chaoyang Zhang

Publication type:

Article

Identification of streptococcal small RNAs that are putative targets of RNase III through bioinformatics analysis of RNA sequencing data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 111, doi. 10.1186/s12859-017-1897-0

By:

Rath, Ethan C.;
Pitman, Stephanie;
Kyu Hong Cho;
Yongsheng Bai

Publication type:

Article

Effective computational detection of piRNAs using n-gram models and support vector machine.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 103, doi. 10.1186/s12859-017-1896-1

By:

Chun-Chi Chen;
Xiaoning Qian;
Byung-Jun Yoon

Publication type:

Article

Development of models for predicting Torsade de Pointes cardiac arrhythmias using perceptron neural networks.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 93, doi. 10.1186/s12859-017-1895-2

By:

Sharifi, Mohsen;
Buzatu, Dan;
Harris, Stephen;
Wilkes, Jon

Publication type:

Article

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

Published in:

BMC Bioinformatics, 2017, v. 18, p. 81, doi. 10.1186/s12859-017-1894-3

By:

Se-Ran Jun;
Wassenaar, Trudy M.;
Wanchai, Visanu;
Patumcharoenpol, Preecha;
Nookaew, Intawat;
Ussery, David W.

Publication type:

Article

Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 61, doi. 10.1186/s12859-017-1893-4

By:

Boluki, Shahin;
Esfahani, Mohammad Shahrokh;
Xiaoning Qian;
Dougherty, Edward R.

Publication type:

Article

Texture based skin lesion abruptness quantification to detect malignancy.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 51, doi. 10.1186/s12859-017-1892-5

By:

Erol, Recep;
Bayraktar, Mustafa;
Kockara, Sinan;
Kaya, Sertan;
Halic, Tansel

Publication type:

Article

Mutation status coupled with RNA-sequencing data can efficiently identify important non-significantly mutated genes serving as diagnostic biomarkers of endometrial cancer.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 39, doi. 10.1186/s12859-017-1891-6

By:

Keqin Liu;
Li He;
Zhichao Liu;
Junmei Xu;
Yuan Liu;
Qifan Kuang;
Zhining Wen;
Menglong Li

Publication type:

Article

Identification and characterization of conserved lncRNAs in human and rat brain.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 31, doi. 10.1186/s12859-017-1890-7

By:

Dan Li;
Yang, Mary Qu

Publication type:

Article

Repositioning drugs by targeting network modules: a Parkinson's disease case study.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 17, doi. 10.1186/s12859-017-1889-0

By:

Zongliang Yue;
Arora, Itika;
Zhang, Eric Y.;
Laufer, Vincent;
Bridges, S. Louis;
Chen, Jake Y.

Publication type:

Article

ALE: automated label extraction from GEO metadata.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 7, doi. 10.1186/s12859-017-1888-1

By:

Giles, Cory B.;
Brown, Chase A.;
Ripperger, Michael;
Dennis, Zane;
Roopnarinesingh, Xiavan;
Porter, Hunter;
Perz, Aleksandra;
Wren, Jonathan D.

Publication type:

Article

Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.

Published in:

2017

By:

Wren, Jonathan D.;
Dozmorov, Mikhail G.;
Toby, Inimary;
Nanduri, Bindu;
Homayouni, Ramin;
Manda, Prashanti;
Thakkar, Shraddha

Publication type:

Proceeding

CSmetaPred: a consensus method for prediction of catalytic residues.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1987-z

By:

Choudhary, Preeti;
Kumar, Shailesh;
Bachhawat, Anand Kumar;
Pandit, Shashi Bhushan

Publication type:

Article

Super-delta: a new differential gene expression analysis procedure with robust data normalization.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1992-2

By:

Yuhang Liu;
Jinfeng Zhang;
Xing Qiu

Publication type:

Article

An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1989-x

By:

Thillaiyampalam, Gayathri;
Liberante, Fabio;
Murray, Liam;
Cardwell, Chris;
Mills, Ken;
Shu-Dong Zhang

Publication type:

Article

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1981-5

By:

Ong, Edison;
Jiangan Xie;
Zhaohui Ni;
Qingping Liu;
Sarntivijai, Sirarat;
Yu Lin;
Cooper, Daniel;
Terryn, Raymond;
Stathias, Vasileios;
Chung, Caty;
Schürer, Stephan;
Yongqun He

Publication type:

Article

Cell ontology in an age of data-driven cell classification.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1980-6

By:

Osumi-Sutherland, David

Publication type:

Article

Comparison, alignment, and synchronization of cell line information between CLO and EFO.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1979-z

By:

Ong, Edison;
Sarntivijai, Sirarat;
Jupp, Simon;
Parkinson, Helen;
Yongqun He

Publication type:

Article

Usage of cell nomenclature in biomedical literature.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1978-0

By:

Kafkas, Şenay;
Sarntivijai, Sirarat;
Hoehndorf, Robert

Publication type:

Article

Cell type discovery and representation in the era of high-content single cell phenotyping.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1977-1

By:

Bakken, Trygve;
Cowell, Lindsay;
Aevermann, Brian D.;
Novotny, Mark;
Hodge, Rebecca;
Miller, Jeremy A.;
Lee, Alexandra;
Ivan Chang;
McCorrison, Jamison;
Pulendran, Bali;
Yu Qian;
Schork, Nicholas J.;
Lasken, Roger S.;
Lein, Ed S.;
Scheuermann, Richard H.

Publication type:

Article