Works matching IS 14747596 AND DT 2014 AND VI 15 AND IP 12

Results: 36

Prioritizing causal disease genes using unbiased genomic features.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 534, doi. 10.1186/s13059-014-0534-8

By:

Deo, Rahul C;
Musso, Gabriel;
Tasan, Murat;
Paul Tang;
Annie Poon;
Christiana Yuan;
Felix, Janine F;
Vasan, Ramachandran S;
Beroukhim, Rameen;
De Marco, Teresa;
Pui-Yan Kwok;
MacRae, Calum A;
Roth, Frederick P

Publication type:

Article

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 523, doi. 10.1186/s13059-014-0523-y

By:

Zhenqiang Su;
Hong Fang;
Huixiao Hong;
Leming Shi;
Wenqian Zhang;
Wenwei Zhang;
Yanyan Zhang;
Zirui Dong;
Lee J Lancashire;
Bessarabova, Marina;
Xi Yang;
Baitang Ning;
Binsheng Gong;
Meehan, Joe;
Joshua Xu;
Weigong Ge;
Perkins, Roger;
Fischer, Matthias;
Weida Tong

Publication type:

Article

Functional normalization of 450k methylation array data improves replication in large cancer studies.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 503, doi. 10.1186/s13059-014-0503-2

By:

Fortin, Jean-Philippe;
Labbe, Aurélie;
Lemire, Mathieu;
Zanke, Brent W;
Hudson, Thomas J;
Fertig, Elana J;
Greenwood, Celia MT;
Hansen, Kasper D

Publication type:

Article

Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 530, doi. 10.1186/s13059-014-0530-z

By:

Kumar, Akash;
Boyle, Evan A;
Tokita, Mari;
Mikheev, Andrei M;
Sanger, Michelle C;
Girard, Emily;
Silber, John R;
Gonzalez-Cuyar, Luis F;
Hiatt, Joseph B;
Adey, Andrew;
Choli Lee;
Kitzman, Jacob O;
Born, Donald E;
Silbergeld, Daniel L;
Olson, James M;
Rostomily, Robert C;
Shendure, Jay

Publication type:

Article

Combined image and genomic analysis of high-grade serous ovarian cancer reveals PTEN loss as a common driver event and prognostic classifier.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 526, doi. 10.1186/s13059-014-0526-8

By:

Martins, Filipe C;
de Santiago, Ines;
Anne Trinh;
Jian Xian;
Anne Guo;
Sayal, Karen;
Jimenez-Linan, Mercedes;
Deen, Suha;
Driver, Kristy;
Mack, Marie;
Aslop, Jennifer;
Pharoah, Paul D;
Markowetz, Florian;
Brenton, James D

Publication type:

Article

Tracking down the sources of experimental contamination in microbiome studies.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 564, doi. 10.1186/s13059-014-0564-2

By:

Weiss, Sophie;
Amir, Amnon;
Hyde, Embriette R;
Metcalf, Jessica L;
Se Jin Song;
Knight, Rob

Publication type:

Article

Hiding in the dark: uncovering cancer drivers through image-guided genomics.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 563, doi. 10.1186/s13059-014-0563-3

By:

Kosuke Yoshihara;
Verhaak, Roel GW

Publication type:

Article

Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 521, doi. 10.1186/s13059-014-0521-0

By:

Jian Xue;
Xin Zhou;
Chuan-Xi Zhang;
Li-Li Yu;
Hai-Wei Fan;
Zhuo Wang;
Hai-Jun Xu;
Yu Xi;
Zeng-Rong Zhu;
Wen-Wu Zhou;
Peng-Lu Pan;
Bao-Ling Li;
Colbourne, John K;
Noda, Hiroaki;
Yoshitaka Suetsugu;
Tetsuya Kobayashi;
Yuan Zheng;
Shanlin Liu;
Rui Zhang;
Yang Liu

Publication type:

Article

TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 536, doi. 10.1186/s13059-014-0536-6

By:

Diermeier, Sarah;
Kolovos, Petros;
Heizinger, Leonhard;
Schwartz, Uwe;
Georgomanolis, Theodore;
Zirkel, Anne;
Wedemann, Gero;
Grosveld, Frank;
Knoch, Tobias A;
Merkl, Rainer;
Cook, Peter R;
Längst, Gernot;
Papantonis, Argyris

Publication type:

Article

Targeting male mosquito mating behaviour for malaria control.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 347, doi. 10.1186/s13071-015-0961-8

By:

Diabate, Abdoulaye;
Tripet, Frédéric

Publication type:

Article

Surfing waves of data in San Diego: sophisticated analyses provide a broad view of human genetic diversity.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 562, doi. 10.1186/s13059-014-0562-4

By:

Reppell, Mark;
Koch, Evan;
Peter, Benjamin M;
Novembre, John

Publication type:

Article

From hybrids to hermaphrodites in population genetics.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 301, doi. 10.1186/gb-2013-14-1-301

By:

Verity, Robert;
Marquardt, Jeannine;
Hatlen, Andrea;
Zohren, Jasmin

Publication type:

Article

Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 537, doi. 10.1186/s13059-014-0537-5

By:

Kelley, David R;
Hendrickson, David G;
Tenen, Danielle;
Rinn, John L

Publication type:

Article

Tomato nuclear proteome reveals the involvement of specific E2 ubiquitin-conjugating enzymes in fruit ripening.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 548, doi. 10.1186/s13059-014-0548-2

By:

Yuying Wang;
Weihao Wang;
Jianghua Cai;
Yanrui Zhang;
Guozheng Qin;
Shiping Tian

Publication type:

Article

Integrated analyses of DNA methylation and hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 533, doi. 10.1186/s13059-014-0533-9

By:

Fei Gao;
Yudong Xia;
Junwen Wang;
Zhilong Lin;
Ying Ou;
Xing Liu;
Weilong Liu;
Boping Zhou;
Huijuan Luo;
Baojin Zhou;
Bo Wen;
Xiuqing Zhang;
Jian Huang

Publication type:

Article

The importance of study design for detecting differentially abundant features in high-throughput experiments.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 527, doi. 10.1186/s13059-014-0527-7

By:

Huaien Luo;
Juntao Li;
Burton Kuan Hui Chia;
Robson, Paul;
Nagarajan, Niranjan

Publication type:

Article

TET1 regulates hypoxia-induced epithelialmesenchymal transition by acting as a co-activator.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 513, doi. 10.1186/s13059-014-0513-0

By:

Ya-Ping Tsai;
Hsiao-Fan Chen;
Sung-Yuan Chen;
Wei-Chung Cheng;
Hsei-Wei Wang;
Zih-Jie Shen;
Chunxiao Song;
Shu-Chun Teng;
Chuan He;
Kou-Juey Wu

Publication type:

Article

Temporal variability is a personalized feature of the human microbiome.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 531, doi. 10.1186/s13059-014-0531-y

By:

Flores, Gilberto E;
Caporaso, J Gregory;
Henley, Jessica B;
Rideout, Jai Ram;
Domogala, Daniel;
Chase, John;
Leff, Jonathan W;
Vázquez-Baeza, Yoshiki;
Gonzalez, Antonio;
Knight, Rob;
Dunn, Robert R;
Fierer, Noah

Publication type:

Article

Sex differences in the genome-wide DNA methylation pattern and impact on gene expression, microRNA levels and insulin secretion in human pancreatic islets.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 522, doi. 10.1186/s13059-014-0522-z

By:

Hall, Elin;
Volkov, Petr;
Dayeh, Tasnim;
S Esguerra, Jonathan Lou;
Salö, Sofia;
Eliasson, Lena;
Rönn, Tina;
Bacos, Karl;
Ling, Charlotte

Publication type:

Article

Dragging scientific publishing into the 21st century.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 556, doi. 10.1186/s13059-014-0556-2

By:

Khan, Razib;
Goodman, Laurie;
Mittelman, David

Publication type:

Article

Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 512, doi. 10.1186/s13059-014-0512-1

By:

Yu-Chan Zhang;
Jian-You Liao;
Ze-Yuan Li;
Yang Yu;
Jin-Ping Zhang;
Quan-Feng Li;
Liang-Hu Qu;
Wen-Sheng Shu;
Yue-Qin Chen

Publication type:

Article

Characterizing heterogeneity in leukemic cells using single-cell gene expression analysis.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 525, doi. 10.1186/s13059-014-0525-9

By:

Saadatpour, Assieh;
Guoji Guo;
Orkin, Stuart H;
Guo-Cheng Yuan

Publication type:

Article

Epigenetic modifications are associated with inter-species gene expression variation in primates.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 547, doi. 10.1186/s13059-014-0547-3

By:

Xiang Zhou;
Cain, Carolyn E;
Myrthil, Marsha;
Lewellen, Noah;
Michelini, Katelyn;
Davenport, Emily R;
Stephens, Matthew;
Pritchard, Jonathan K;
Gilad, Yoav

Publication type:

Article

Transcriptome-wide modulation of splicing by the Exon Junction Complex.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 192, doi. 10.1186/s13059-014-0551-7

By:

Wang, Zhen;
Murigneux, Valentine;
Le Hir, Hervé

Publication type:

Article

Conserved syntenic clusters of protein coding genes are missing in birds.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 378, doi. 10.1186/s13059-014-0565-1

By:

Lovell, Peter V.;
Wirthlin, Morgan;
Wilhelm, Larry;
Minx, Patrick;
Lazar, Nathan H.;
Carbone, Lucia;
Warren, Wesley C.;
Mello, Claudio V.

Publication type:

Article

Determining the quality and complexity of nextgeneration sequencing data without a reference genome.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 327, doi. 10.1186/s13059-014-0555-3

By:

Anvar, Yahya;
Khachatryan, Lusine;
Vermaat, Martijn;
van Galen, Michiel;
Pulyakhina, Irina;
Ariyurek, Yavuz;
Kraaijeveld, Ken;
den Dunnen, Johan T.;
de Knijff, Peter;
't Hoen, Peter A. C.;
Laros, Jeroen F. J.

Publication type:

Article

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 302, doi. 10.1186/s13059-014-0554-4

By:

Wei Li;
Han Xu;
Tengfei Xiao;
Le Cong;
Love, Michael I.;
Feng Zhang;
Irizarry, Rafael A.;
Liu, Jun S.;
Brown, Myles;
Liu, X. Shirley

Publication type:

Article

Evaluation of de novo transcriptome assemblies from RNA-Seq data.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 262, doi. 10.1186/s13059-014-0553-5

By:

Bo Li;
Fillmore, Nathanael;
Yongsheng Bai;
Collins, Mike;
Thomson, James A.;
Stewart, Ron;
Dewey, Colin N.

Publication type:

Article

Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 225, doi. 10.1186/s13059-014-0552-6

By:

Leamy, Larry J.;
Kelly, Scott A.;
Nietfeldt, Joseph;
Legge, Ryan M.;
Fangrui Ma;
Kunjie Hua;
Sinha, Rohita;
Peterson, Daniel A.;
Walter, Jens;
Benson, Andrew K.;
Pomp, Daniel

Publication type:

Article

Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 353, doi. 10.1186/s13059-014-0557-1

By:

Shengbin Li;
Bo Li;
Cheng Cheng;
Zijun Xiong;
Qingbo Liu;
Jianghua Lai;
Carey, Hannah V.;
Qiong Zhang;
Haibo Zheng;
Shuguang Wei;
Hongbo Zhang;
Liao Chang;
Shiping Liu;
Shanxin Zhang;
Bing Yu;
Xiaofan Zeng;
Yong Hou;
Wenhui Nie;
Youmin Guo;
Teng Chen

Publication type:

Article

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 153, doi. 10.1186/s13059-014-0550-8

By:

Love, Michael I.;
Huber, Wolfgang;
Anders, Simon

Publication type:

Article

Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 120, doi. 10.1186/s13059-014-0549-1

By:

Weber, Claudia C.;
Boussau, Bastien;
Romiguier, Jonathan;
Jarvis, Erich D.;
Ellegren, Hans

Publication type:

Article

Organization and evolution of transposable elements along the bread wheat chromosome 3B.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 88, doi. 10.1186/s13059-014-0546-4

By:

Daron, Josquin;
Glover, Natasha;
Pingault, Lise;
Theil, Sébastien;
Jamilloux, Véronique;
Paux, Etienne;
Barbe, Valérie;
Mangenot, Sophie;
Alberti, Adriana;
Wincker, Patrick;
Quesneville, Hadi;
Feuillet, Catherine;
Choulet, Frédéric

Publication type:

Article

Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 57, doi. 10.1186/s13059-014-0545-5

By:

Auclair, Ghislain;
Guibert, Sylvain;
Bender, Ambre;
Weber, Michael

Publication type:

Article

Low frequency of paleoviral infiltration across the avian phylogeny.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 33, doi. 10.1186/s13059-014-0539-3

By:

Jie Cui;
Wei Zhao;
Huang, Zhiyong;
Jarvis, Erich D.;
Gilbert, M. Thomas P.;
Walker, Peter J.;
Holmes, Edward C.;
Zhang, Guojie

Publication type:

Article

Discovery of genes affecting resistance of barley to adapted and non-adapted powdery mildew fungi.

Published in:

Genome Biology, 2014, v. 15, n. 12, p. 1, doi. 10.1186/s13059-014-0518-8

By:

Douchkov, Dimitar;
Lück, Stefanie;
Johrde, Annika;
Nowara, Daniela;
Himmelbach, Axel;
Rajaraman, Jeyaraman;
Stein, Nils;
Sharma, Rajiv;
Kilian, Benjamin;
Schweizer, Patrick

Publication type:

Article