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DIFFERENTIAL HIVE PLOTS: SEEING NETWORKS CHANGE.
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- Leonardo, 2017, v. 50, n. 5, p. 504, doi. 10.1162/LEON_a_01278
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- Article
Seasonal and sex-dependent gene expression in emu (Dromaius novaehollandiae) fat tissues.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-13681-5
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- Article
Linked-read sequencing for detecting short tandem repeat expansions.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-13024-4
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- Article
Calculation of Molecular Weight Distributions in Non-Linear Free-Radical Polymerization Using the Numerical Fractionation Technique.
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- Macromolecular Theory & Simulations, 2002, v. 11, n. 5, p. 533, doi. 10.1002/1521-3919(20020601)11:5<533::AID-MATS533>3.0.CO;2-O
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- Article
RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes.
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- NAR Genomics & Bioinformatics, 2021, v. 3, n. 4, p. 1, doi. 10.1093/nargab/lqab105
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- Article
Associating Biological Activity and Predicted Structure of Antimicrobial Peptides from Amphibians and Insects.
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- Antibiotics (2079-6382), 2022, v. 11, n. 12, p. 1710, doi. 10.3390/antibiotics11121710
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- Article
Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage.
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- Antibiotics (2079-6382), 2022, v. 11, n. 7, p. 952, doi. 10.3390/antibiotics11070952
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- Article
Large-scale profiling of microRNAs for The Cancer Genome Atlas.
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- Nucleic Acids Research, 2016, v. 44, n. 1, p. e3, doi. 10.1093/nar/gkv808
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- Article
Complete genomic landscape of a recurring sporadic parathyroid carcinoma.
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- Journal of Pathology, 2013, v. 230, n. 3, p. 249, doi. 10.1002/path.4203
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- Article
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.
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- Journal of Pathology, 2012, v. 226, n. 1, p. 7, doi. 10.1002/path.2995
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- Article
The Cancer Genome Atlas Pan-Cancer analysis project.
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- Nature Genetics, 2013, v. 45, n. 10, p. 1113, doi. 10.1038/ng.2764
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- Article
mrsFAST: a cache-oblivious algorithm for short-read mapping.
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- 2010
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- Publication type:
- Letter
AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens.
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- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08310-4
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- Publication type:
- Article
ntHash2: recursive spaced seed hashing for nucleotide sequences.
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- Bioinformatics, 2022, v. 38, n. 20, p. 4812, doi. 10.1093/bioinformatics/btac564
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- Publication type:
- Article
Replicated Landscape Genomics Identifies Evidence of Local Adaptation to Urbanization in Wood Frogs.
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- Journal of Heredity, 2019, v. 110, n. 6, p. 707, doi. 10.1093/jhered/esz041
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- Article
Hive plots—rational approach to visualizing networks.
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- Briefings in Bioinformatics, 2012, v. 13, n. 5, p. 627, doi. 10.1093/bib/bbr069
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- Publication type:
- Article
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim.
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- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad013
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- Publication type:
- Article
NanoSim: nanopore sequence read simulator based on statistical characterization.
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- GigaScience, 2017, v. 6, n. 4, p. 1, doi. 10.1093/gigascience/gix010
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- Publication type:
- Article
A high-resolution reference genetic map positioning 8.8 K genes for the conifer white spruce: structural genomics implications and correspondence with physical distance.
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- Plant Journal, 2017, v. 90, n. 1, p. 189, doi. 10.1111/tpj.13478
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- Publication type:
- Article
A novel approach to wildlife transcriptomics provides evidence of disease‐mediated differential expression and changes to the microbiome of amphibian populations.
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- Molecular Ecology, 2018, v. 27, n. 6, p. 1413, doi. 10.1111/mec.14528
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- Publication type:
- Article
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38553-y
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- Article
Linear time complexity de novo long read genome assembly with GoldRush.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38716-x
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- Publication type:
- Article
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38553-y
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- Publication type:
- Article
Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences.
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- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02447-3
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- Article
De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130720
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- Publication type:
- Article
UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.
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- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0128026
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- Article
DIDA: Distributed Indexing Dispatched Alignment.
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- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0126409
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- Publication type:
- Article
JAGuaR: Junction Alignments to Genome for RNA-Seq Reads.
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- PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102398
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- Publication type:
- Article
Whole Genome Duplication and Enrichment of Metal Cation Transporters Revealed by <i>De Novo</i> Genome Sequencing of Extremely Halotolerant Black Yeast <i>Hortaea werneckii</i>.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071328
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- Publication type:
- Article
Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.
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- BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-95
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- Publication type:
- Article
Physlr: Next-Generation Physical Maps.
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- DNA (2673-8856), 2022, v. 2, n. 2, p. 116, doi. 10.3390/dna2020009
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- Article
Sealer: a scalable gap-closing application for finishing draft genomes.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0663-4
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- Article
Sealer: a scalable gap-closing application for finishing draft genomes.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 230, doi. 10.1186/s12859-015-0663-4
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- Publication type:
- Article
Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-167
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- Publication type:
- Article
Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis.
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- Nature Cell Biology, 2015, v. 17, n. 3, p. 311, doi. 10.1038/ncb3110
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- Article
Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 1, p. 1, doi. 10.1093/g3journal/jkad247
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- Article
The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 4, p. 1, doi. 10.1093/g3journal/jkac038
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- Article
Conifers Concentrate Large Numbers of NLR Immune Receptor Genes on One Chromosome.
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- Genome Biology & Evolution, 2024, v. 16, n. 6, p. 1, doi. 10.1093/gbe/evae113
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- Publication type:
- Article
TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.
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- BMC Medical Genomics, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s12920-018-0402-6
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- Publication type:
- Article
Konnector v2.0: pseudo-long reads from paired-end sequencing data.
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- BMC Medical Genomics, 2015, v. 8, p. 1, doi. 10.1186/1755-8794-8-S3-S1
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- Publication type:
- Article
Long-insert sequence capture detects high copy numbers in a defence-related beta-glucosidase gene βglu-1 with large variations in white spruce but not Norway spruce.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-09978-6
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- Article
Genomic virulence features of Beauveria bassiana as a biocontrol agent for the mountain pine beetle population.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09473-4
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- Publication type:
- Article
Template‐Directed Synthesis of Bivalent, Broad‐Spectrum Hosts for Neuromuscular Blocking Agents**.
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- Angewandte Chemie, 2022, v. 134, n. 4, p. 1, doi. 10.1002/ange.202113235
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- Publication type:
- Article
Enabling robust environmental DNA assay design with "unikseq" for the identification of taxon‐specific regions within whole mitochondrial genomes.
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- Environmental DNA, 2023, v. 5, n. 5, p. 1032, doi. 10.1002/edn3.438
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- Article
Spaced Seed Data Structures for De Novo Assembly.
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- International Journal of Genomics, 2015, v. 2015, p. 1, doi. 10.1155/2015/196591
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- Article
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest.
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- Genome Biology, 2013, v. 14, n. 3, p. 1, doi. 10.1186/gb-2013-14-3-r27
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- Publication type:
- Article
Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure.
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- Genome Biology & Evolution, 2020, v. 12, n. 7, p. 1174, doi. 10.1093/gbe/evaa108
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- Publication type:
- Article
Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.
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- Genome Biology & Evolution, 2016, v. 8, n. 1, p. 29, doi. 10.1093/gbe/evv244
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- Publication type:
- Article
Template‐Directed Synthesis of Bivalent, Broad‐Spectrum Hosts for Neuromuscular Blocking Agents**.
- Published in:
- Angewandte Chemie International Edition, 2022, v. 61, n. 4, p. 1, doi. 10.1002/anie.202113235
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- Publication type:
- Article
Recurrent tumor-specific regulation of alternative polyadenylation of cancerrelated genes.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4903-7
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- Article