Works matching IS 17536561 AND DT 2012 AND VI 6 AND IP Suppl 6

Results: 84

Metabolomic and exome sequence analysis reveal novel molecular signatures associated with colorectal cancer relapse.

Published in:

2012

By:

Gauba, Robinder;
Natarajan, Thanemozhi G.;
Lei Song;
Bhuvaneshwar, Krithika;
Madhavan, Subha;
Gusev, Yuriy

Publication type:

Abstract

Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq.

Published in:

2012

By:

Kusko, Rebecca L.;
Brothers II, John;
Liu, Gang;
Luo, Lingqi;
Guardela, Brenda Juan;
Tedrow, John;
Aleksyev, Yuriy;
Yang, Ivana V.;
Correll, Mick;
Geraci, Mark;
Quackenbush, John;
Sciurba, Frank;
Lenburg, Marc;
Schwartz, David A.;
Beane, Jennifer;
Kaminski, Naftali;
Spira, Avrum

Publication type:

Abstract

In silico drug screening and potential target identification for hepatocellular carcinoma using support vector machine.

Published in:

2012

By:

Wu-Lung R Yang;
Yu-En Lee;
Ming-Huang Chen;
Yu-Wen Liu;
Pei-Ying Lee;
Kun-Mao Chao;
Chi-Ying F Huang

Publication type:

Abstract

Massively parallel sequencing of formalin-fixed paraffin-embedded tissues.

Published in:

2012

By:

Erlich, Rachel L.;
Palescandolo, Emanuele;
Jones, Robert T.;
Sunkavalli, Ashwini;
Raza, Alina;
Ducar, Matthew;
Hatton, Charles;
Go, Christina;
Roden, Christine;
Hanna, Megan;
Mills, Adri;
Adusumilli, Ravali;
Kumar, Prateek;
Brastianos, Priscilla K.;
Meyerson, Matthew L.;
Hahn, William C.;
MacConaill, Laura E.;
Van Hummelen, Paul

Publication type:

Abstract

CLIA-certified next-generation sequencing analysis in the cloud.

Published in:

2012

By:

Ying Zhang;
Erdmann, Jesse;
Chilton, John;
Onsongo, Getiria;
Bower, Matthew;
Beckman, Kenny;
Thyagarajan, Bharat;
Silverstein, Kevin;
Lamblin, Anne-Francoise

Publication type:

Abstract

Mutational spectrum of WTX, WT1, CTNNB1, APC and PLCG2 genes in Wilms tumor defined by massive parallel resequencing.

Published in:

2012

By:

Barros, Bruna D.;
Torrezan, Giovana T.;
Ferreira, Elisa N.;
Maschietto, Mariana;
Krepíschi, Ana C. V.;
Carraro, Dirce M.

Publication type:

Abstract

RNA-Seq analysis of two brain regions vulnerable to Alzheimer's disease.

Published in:

2012

By:

Xinkun Wang

Publication type:

Abstract

Simple and precise targeted editing of the human genome using rAAV-mediated homologous recombination.

Published in:

2012

By:

Torrance, Christopher J.

Publication type:

Abstract

Structural effect of P278A mutation conferring breast cancer susceptibility in the p53 DNA-binding core domain.

Published in:

2012

By:

Suneetha, Y.;
Kumaraswamy Naidu, C.

Publication type:

Abstract

Dirichlet process model for joint haplotype inference and GWAS.

Published in:

2012

By:

Sahu, Avinash Das;
Hannenhalli, Sridhar

Publication type:

Abstract

Verification of systems biology research in the age of collaborative competition.

Published in:

2012

By:

Poussin, Carine

Publication type:

Abstract

POSTER PRESENTATION.

Published in:: BMC Proceedings, 2012, v. 6, n. Suppl 6, p. 1, doi. 10.1186/1753-6561-6-S6-P47
Publication type:: Article

Apoptotic gene expression in melanoma cells treated with kaurenic acid.

Published in:

2012

By:

Rivero, María B.;
Mendoza, Hernán J.;
AChiurillo, Miguel;
Sosa-Seguera, Miriam C.

Publication type:

Abstract

POSTER PRESENTATION.

Published in:: BMC Proceedings, 2012, v. 6, n. Suppl 6, p. 1, doi. 10.1186/1753-6561-6-S6-P46
Publication type:: Article

ICGC PedBrain - dissecting the genomic complexity underlying medulloblastoma using whole-genome sequencing.

Published in:

2012

By:

Jäger, Natalie;
Jones, David T. W.;
Kool, Marcel;
Zichner, Thomas;
Hutter, Barbara;
Sultan, Marc;
Yoon-Jae Cho;
Pugh, Trevor J.;
Hovestadt, Volker;
Stütz, Adrian M.;
Rausch, Tobias;
Warnatz, Hans-Jörg;
Brors, Benedikt;
Northcott, Paul A.;
Taylor, Michael D.;
Meyerson, Matthew;
Pomeroy, Scott L.;
Yaspo, Marie-Laure;
Korbel, Jan O.;
Korshunov, Andrey

Publication type:

Abstract

Modeling influenza sequence evolution for vaccination.

Published in:

2012

By:

Taijiao Jiang

Publication type:

Abstract

Optimizing genotype quality metrics for individual exomes and cohort analysis.

Published in:

2012

By:

Gordon, Paul M. K.;
Dimnik, Leo;
Lamont, Ryan;
Innes, Micheil;
Bernier, Francois;
Parboosingh, Jillian

Publication type:

Abstract

Deep sequencing of the microRNA transcriptome in current, former, and never smokers with lung adenocarcinoma.

Published in:

2012

By:

Teresa W. Wang;
Campbell, Josh D.;
Lingqi Luo;
Gang Liu;
Ji Xiao;
Lenburg, Marc E.;
Belinsky, Steven A.;
Spira, Avrum

Publication type:

Abstract

A study on genetic aspects of male infertility in North-east Indian population, India.

Published in:

2012

By:

Barbhuiya, Purnali Nath;
Gogoi, Anannya;
Ahmed, Giasuddin;
Mahanta, Rita

Publication type:

Abstract

Metastatic outgrowth encompasses COL-I, FN1 and POSTN upregulation and assembly to fibrillar networks regulating cell adhesion, migration and growth.

Published in:

2012

By:

Soikkeli, J.;
Yin, M.;
Hölttä, E.

Publication type:

Abstract

Comparative analysis of strand-specific RNA sequencing approaches.

Published in:

2012

By:

Munafo, Daniela;
Ping Liu;
Sumner, Christine;
Yigit, Erbay;
Merrill, Landon;
Apone, Lynne;
Langhorst, Brad;
Stewart, Fiona;
Dimalanta, Eileen T.;
Davis, Theodore

Publication type:

Abstract

Extended homozygous haplotypes at genes involved in brain development associated with autism.

Published in:

2012

By:

Ping-I Lin

Publication type:

Abstract

AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations.

Published in:

2012

By:

Hue Vuong;
Stephens, Robert M.;
Volfovsky, Natalia

Publication type:

Abstract

Next-generation sequencing at Merck-Boston.

Published in:

2012

By:

Stevens, Richard

Publication type:

Abstract

Exome sequencing identifies somatic point mutations associated with acquired endocrine resistance in breast cancer cell lines.

Published in:

2012

By:

Ehlers, Natasja S.;
Zhu Shi Da;
Elias, Daniel;
Xue Lin;
Jian Li;
Bjerre, Christina;
Brunner, Nils;
Bolund, Lars;
Wang Jun;
Gupta, Ramneek;
Ditzel, Henrik J.

Publication type:

Abstract

Dissecting the genetic architecture of coronary artery disease by genome engineering.

Published in:

2012

By:

Segal, David J.;
Bhakta, Mital S.;
Das, Kumitaa Theva;
Chongxiu Sun;
Grace, Natalie M.;
Nolta, Jan A.;
Knowlton, Anne A.;
Rocke, David M.;
Simon, Scott I.

Publication type:

Abstract

Targeted genome reconstruction strategy for endosymbionts in eukaryotic genomes.

Published in:

2012

By:

Saha, Surya;
Hunter, Wayne B.;
Lindeberg, Magdalen

Publication type:

Abstract

Transcriptomics analysis revealed an indirect effect of aqueous cigarette smoke extract in promoting the adhesion of monocytic cells to endothelial cells.

Published in:

2012

By:

Poussin, Carine;
Gallitz, Inka;
Schlage, Walter;
Steffen, Yvonne;
Stolle, Katrin;
Lebrun, Stephan;
Hoeng, Julia;
Lietz, Michael

Publication type:

Abstract

Reflex™: a novel method to sequence barcoded long-range PCR products in a pooled population of hundreds of DNA samples.

Published in:

2012

By:

Casbon, James;
Slatter, Andrew;
Musgrave-Brown, Esther;
Osborne, Robert;
Lichtenstein, Conrad;
Brenner, Sydney

Publication type:

Abstract

An integrative genomics approach for mapping the emerging genetic susceptibility landscape of triple-negative breast cancer.

Published in:

2012

By:

Hicks, Chindo;
Pannuti, Antonio;
Backus, Kandis;
Miele, Lucio

Publication type:

Abstract

siRNAs targeting the ERK2 signaling pathway and AML1/MTG8 fusion gene attenuate the differentiation, proliferation and growth arrest in t(8;21) leukemia.

Published in:

2012

By:

Bashanfer, Salem;
Al-Hassan, Faisal Mutee;
Hassan, Rosline;
Heidenreich, Olaf;
Said, Mohamed Saifulaman Mohamed;
Yusoff, Narazah Mohd

Publication type:

Abstract

Enhancer network revealed by correlated DNAse HS states of enhancers.

Published in:

2012

By:

Malin, Justin;
Aniba, Radhouane;
Hannenhalli, Sridhar

Publication type:

Abstract

A functional role of the SNP -592 of human IL10 gene regulatory region is associated with an increased IL-10 expression and risk for human papillomavirus cervical lesion and cervical cancer development.

Published in:

2012

By:

Torres-Poveda, K.;
Burguete-García, A.;
Bahena-Román, M.;
Ortíz-Flores, E.;
Delgado-Romero, K.;
Cantú, D.;
García-Carrancá, A.;
Madrid-Marina, V.

Publication type:

Abstract

A fast solution to NGS library preparation with low nanogram DNA input.

Published in:

2012

By:

Pingfang Liu;
Lohman, Gregory J.S.;
Cantor, Eric;
Langhorst, Bradley W.;
Yigit, Erbay;
Apone, Lynne M.;
Munafo, Daniela B.;
Sumner, Christine;
Stewart, Fiona J.;
Evans Jr., Thomas C.;
Nichols, Nicole M.;
Dimalanta, Eileen T.;
Davis, Theodore B.

Publication type:

Abstract

Multiple de novo copy number variations in two subjects with developmental problems and multiple congenital anomalies.

Published in:

2012

By:

Pengfei Liu;
Walter, Klaudia;
Writzl, Karin;
Gelowani, Violet;
Lindsay, Sarah;
Carvalho, Claudia M.B.;
Withers, Marjorie;
Wiszniewska, Joanna;
Patel, Ankita;
Rautenstrauss, Bernd;
Hurles, Matthew E.;
Lupski, James R.

Publication type:

Abstract

Bernoulli mixture models in application to the evaluation of algorithms estimating functionality of missense mutations.

Published in:

2012

By:

Hicks, Stephanie;
Plon, Sharon E.;
Kimmel, Marek

Publication type:

Abstract

Investigation of retroviral integration preference via high-throughput sequencing.

Published in:

2012

By:

LaFave, Matthew C.;
Varshney, Gaurav K.;
Burgess, Shawn M.

Publication type:

Abstract

Moving beyond gene expression: identification of lung-disease-associated novel transcripts and alternative splicing by RNA sequencing.

Published in:

2012

By:

Brothers II, John;
Kusko, Rebecca;
Liu, Gang;
Luo, Lingqi;
Guardela, Brenda Juan;
Tedrow, John;
Alekesyev, Yuriy;
Yang, Ivana V.;
Correll, Mick;
Geraci, Mark;
Quackenbush, John;
Sciurba, Frank;
Sebastiani, Paola;
Lenburg, Marc;
Kaminski, Naftali;
Schwartz, David A.;
Spira, Avrum;
Beane, Jennifer

Publication type:

Abstract

POSTER PRESENTATION.

Published in:: BMC Proceedings, 2012, v. 6, n. Suppl 6, p. 1, doi. 10.1186/1753-6561-6-S6-P20
Publication type:: Article

Investigation of rare variation in one thousand cancer genes and its association with risk of breast and prostate cancer.

Published in:

2012

By:

Klevebring, Daniel;
Lindberg, Johan;
Sundling, Simon;
Neiman, Mårten;
Sandberg, Julia;
Wiklund, Fredrik;
Hall, Per;
Grönberg, Henrik;
Czene, Kamila

Publication type:

Abstract

Deploying next-generation sequencing in a hospital setting.

Published in:

2012

By:

Jorgensen, Lars G. T.;
Siminovitch, Katherine

Publication type:

Abstract

Mining cancer genomes in COSMIC.

Published in:

2012

By:

Jia, Mingming;
Forbes, Simon A.;
Beare, David;
Bindal, Nidhi;
Gunasekaran, Prasad;
Leung, Kenric;
Kok, Chai Yin;
Bamford, Sally;
Cole, Charlotte;
Ward, Sari;
Teague, Jon;
Stratton, Michael R.;
Campbell, Peter;
Futreal, Andrew

Publication type:

Abstract

Discovering epigenetic changes in response to tungsten-alloy treatment using next-generation sequencing technologies.

Published in:

2012

By:

Verma, Ranjana;
Grover, Deepak;
Galdzicki, Zygmunt

Publication type:

Abstract

The consequences of denoising marker-based metagenomic data.

Published in:

2012

By:

Gaspar, John M.;
Kelley Thomas, W.

Publication type:

Abstract

Characterizing the small RNA transcriptome associated with COPD and ILD using next-generation sequencing.

Published in:

2012

By:

Campbell, Joshua D.;
Luo, Lingqi;
Liu, Gang;
Xiao, Ji;
Gerrein, Joseph;
Guardela, Brenda J.;
Tedrow, John;
Aleksyev, Yuriy O.;
Yang, Ivana V.;
Correll, Mick;
Geraci, Mark;
Quackenbush, John;
Sciurba, Frank;
Schwartz, David A.;
Kaminski, Naftali;
Lenburg, Marc E.;
Beane, Jennifer;
Spira, Avrum

Publication type:

Abstract

Integration of a standardized pharmacogenomic platform for clinical decision support at Boston Children's Hospital.

Published in:

2012

By:

Brownstein, Catherine;
Fusaro, Vincent A.;
Savage, Sarah;
Clinton, Catherine;
Mandl, Kenneth;
Margulies, David;
Wolf, Wendy;
Manzi, Shannon

Publication type:

Abstract

POSTER PRESENTATION.

Published in:: BMC Proceedings, 2012, v. 6, n. Suppl 6, p. 1, doi. 10.1186/1753-6561-6-S6-P12
Publication type:: Article

Exome sequencing combined with semantic discovery identifies strong disease-associated candidates in a single case of relapsing remitting multiple sclerosis.

Published in:

2012

By:

Jalali Sefid Dashti, Mahjoubeh;
Kotze, Maritha;
Janse van Rensburg, Susan;
Christoffels, Alan;
Gamieldien, Junaid

Publication type:

Abstract

Ultra-high resolution mapping of protein-genome interactions using ChIP-exo.

Published in:

2012

By:

Franklin Pugh, B.

Publication type:

Abstract

Genome-wide analysis of primate and rodent protein-coding and associated non-coding nucleotide sequences.

Published in:

2012

By:

Gadagkar, Sudhindra R.;
Rond, Luke A.

Publication type:

Abstract