Works matching AU Zhou, Jizhong

Results: 329

Warming effects on grassland soil microbial communities are amplified in cool months.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae088

By:

Lei, Jiesi;
Su, Yuanlong;
Jian, Siyang;
Guo, Xue;
Yuan, Mengting;
Bates, Colin T;
Shi, Zhou Jason;
Li, Jiabao;
Su, Yifan;
Ning, Daliang;
Wu, Liyou;
Zhou, Jizhong;
Yang, Yunfeng

Publication type:

Article

Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad002

By:

Zheng, Yue;
Wang, Baozhan;
Gao, Ping;
Yang, Yiyan;
Xu, Bu;
Su, Xiaoquan;
Ning, Daliang;
Tao, Qing;
Li, Qian;
Zhao, Feng;
Wang, Dazhi;
Zhang, Yao;
Li, Meng;
Winkler, Mari-K H;
Ingalls, Anitra E;
Zhou, Jizhong;
Zhang, Chuanlun;
Stahl, David A;
Jiang, Jiandong;
Martens-Habbena, Willm

Publication type:

Article

How sulphate-reducing microorganisms cope with stress: lessons from systems biology.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 6, p. 452, doi. 10.1038/nrmicro2575

By:

Zhou, Jizhong;
He, Qiang;
Hemme, Christopher L.;
Mukhopadhyay, Aindrila;
Hillesland, Kristina;
Zhou, Aifen;
He, Zhili;
Van Nostrand, Joy D.;
Hazen, Terry C.;
Stahl, David A.;
Wall, Judy D.;
Arkin, Adam P.

Publication type:

Article

Soil genomics.

Published in:

2009

By:

Singh, Brajesh K.;
Campbell, Colin D.;
Sorenson, Soren J.;
Zhou, Jizhong

Publication type:

Letter

Effects of a strong static magnetic field on bacterium Shewanella oneidensis: An assessment by using whole genome microarrayWeiming Gao and Yongqing Liu have contribution equally to this work.

Published in:

Bioelectromagnetics, 2005, v. 26, n. 7, p. 558, doi. 10.1002/bem.20133

By:

Weimin Gao;
Yongqing Liu;
Jizhong Zhou;
Hongjun Pan

Publication type:

Article

Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts.

Published in:

Microbial Ecology, 2018, v. 75, n. 2, p. 543, doi. 10.1007/s00248-017-1056-1

By:

He, Jinzhi;
Tu, Qichao;
Ge, Yichen;
Qin, Yujia;
Cui, Bomiao;
Hu, Xiaoyu;
Wang, Yuxia;
Deng, Ye;
Wang, Kun;
Van Nostrand, Joy D.;
Li, Jiyao;
Zhou, Jizhong;
Li, Yan;
Zhou, Xuedong

Publication type:

Article

The Diversity and Co-occurrence Patterns of N-Fixing Communities in a CO-Enriched Grassland Ecosystem.

Published in:

Microbial Ecology, 2016, v. 71, n. 3, p. 604, doi. 10.1007/s00248-015-0659-7

By:

Tu, Qichao;
Zhou, Xishu;
He, Zhili;
Xue, Kai;
Wu, Liyou;
Reich, Peter;
Hobbie, Sarah;
Zhou, Jizhong

Publication type:

Article

Isolation and Characterization of Four Gram-Positive Nickel-Tolerant Microorganisms from Contaminated Sediments.

Published in:

Microbial Ecology, 2007, v. 53, n. 4, p. 670, doi. 10.1007/s00248-006-9160-7

By:

Van Nostrand, Joy D.;
Khijniak, Tatiana V.;
Gentry, Terry J.;
Novak, Michelle T.;
Sowder, Andrew G.;
Zhou, Jizhong Z.;
Bertsch, Paul M.;
Morris, Pamela J.

Publication type:

Article

Unravelling Microbial Communities with DNA-Microarrays: Challenges and Future Directions.

Published in:

Microbial Ecology, 2007, v. 53, n. 3, p. 498, doi. 10.1007/s00248-006-9197-7

By:

Wagner, Michael;
Smidt, Hauke;
Loy, Alexander;
Jizhong Zhou

Publication type:

Article

Different influences of DNA purity indices and quantity on PCR-based DGGE and functional gene microarray in soil microbial community study.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 82, n. 5, p. 983, doi. 10.1007/s00253-009-1912-0

By:

Ning, Jing;
Liebich, Jost;
Kästner, Matthias;
Zhou, Jizhong;
Schäffer, Andreas;
Burauel, Peter

Publication type:

Article

Influence of bicarbonate, sulfate, and electron donors on biological reduction of uranium and microbial community composition.

Published in:

Applied Microbiology & Biotechnology, 2007, v. 77, n. 3, p. 713, doi. 10.1007/s00253-007-1183-6

By:

Wensui Luo;
Wei-Min Wu;
Tingfen Yan;
Criddle, Craig S.;
Jardine, Philip M.;
Jizhong Zhou;
Baohua Gu

Publication type:

Article

Large-scale 16S gene assembly using metagenomics shotgun sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1447, doi. 10.1093/bioinformatics/btx018

By:

Feng Zeng;
Zicheng Wang;
Ying Wang;
Jizhong Zhou;
Ting Chen

Publication type:

Article

Modular organization of protein interaction networks.

Published in:

Bioinformatics, 2007, v. 23, n. 7, p. 916, doi. 10.1093/bioinformatics/btm037

By:

Feng Luo;
Yunfeng Yang;
Chin-Fu Chen;
Roger Chang;
Jizhong Zhou;
Richard H. Scheuermann

Publication type:

Article

Modular organization of protein interaction networks.

Published in:

Bioinformatics, 2007, v. 23, n. 2, p. 207, doi. 10.1093/bioinformatics/btl562

By:

Feng Luo;
Yunfeng Yang;
Chin-Fu Chen;
Roger Chang;
Jizhong Zhou;
Richard H. Scheuermann

Publication type:

Article

Microbial functional diversity: From concepts to applications.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 20, p. 12000, doi. 10.1002/ece3.5670

By:

Escalas, Arthur;
Hale, Lauren;
Voordeckers, James W.;
Yang, Yunfeng;
Firestone, Mary K.;
Alvarez‐Cohen, Lisa;
Zhou, Jizhong

Publication type:

Article

Climate warming enhances microbial network complexity and stability.

Published in:

Nature Climate Change, 2021, v. 11, n. 4, p. 343, doi. 10.1038/s41558-021-00989-9

By:

Yuan, Mengting Maggie;
Guo, Xue;
Wu, Linwei;
Zhang, Ya;
Xiao, Naijia;
Ning, Daliang;
Shi, Zhou;
Zhou, Xishu;
Wu, Liyou;
Yang, Yunfeng;
Tiedje, James M.;
Zhou, Jizhong

Publication type:

Article

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming.

Published in:

Nature Climate Change, 2016, v. 6, n. 6, p. 595, doi. 10.1038/nclimate2940

By:

Xue, Kai;
M. Yuan, Mengting;
J. Shi, Zhou;
Qin, Yujia;
Deng, Ye;
Cheng, Lei;
Wu, Liyou;
He, Zhili;
Van Nostrand, Joy D.;
Bracho, Rosvel;
Natali, Susan;
Schuur, Edward. A. G.;
Luo, Chengwei;
Konstantinidis, Konstantinos T.;
Wang, Qiong;
Cole, James R.;
Tiedje, James M.;
Luo, Yiqi;
Zhou, Jizhong

Publication type:

Article

In vivo Functional Characterization of Hydrophilic X2 Modules in the Cellulosomal Scaffolding Protein.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.861549

By:

Tao, Xuanyu;
Liu, Jiantao;
Kempher, Megan L.;
Xu, Tao;
Zhou, Jizhong

Publication type:

Article

Niche Differentiation of Arsenic-Transforming Microbial Groups in the Rice Rhizosphere Compartments as Impacted by Water Management and Soil-Arsenic Concentrations.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.736751

By:

Somenahally, Anil C.;
Loeppert, Richard H.;
Zhou, Jizhong;
Gentry, Terry J.

Publication type:

Article

Environmental Water and Sediment Microbial Communities Shape Intestine Microbiota for Host Health: The Central Dogma in an Anthropogenic Aquaculture Ecosystem.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.772149

By:

Huang, Zhijian;
Hou, Dongwei;
Zhou, Renjun;
Zeng, Shenzheng;
Xing, Chengguang;
Wei, Dongdong;
Deng, Xisha;
Yu, Lingfei;
Wang, Hao;
Deng, Zhixuan;
Weng, Shaoping;
Ning, Daliang;
Xiao, Chuanle;
Yan, Qingyun;
Zhou, Jizhong;
He, Zhili;
He, Jianguo

Publication type:

Article

Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments.

Published in:

Environmental Microbiology, 2022, v. 24, n. 11, p. 5546, doi. 10.1111/1462-2920.16173

By:

Goff, Jennifer L.;
Szink, Elizabeth G.;
Thorgersen, Michael P.;
Putt, Andrew D.;
Fan, Yupeng;
Lui, Lauren M.;
Nielsen, Torben N.;
Hunt, Kristopher A.;
Michael, Jonathan P.;
Wang, Yajiao;
Ning, Daliang;
Fu, Ying;
Van Nostrand, Joy D.;
Poole, Farris L.;
Chandonia, John‐Marc;
Hazen, Terry C.;
Stahl, David A.;
Zhou, Jizhong;
Arkin, Adam P.;
Adams, Michael W. W.

Publication type:

Article

Microscale heterogeneity of the soil nitrogen cycling microbial functional structure and potential metabolism.

Published in:

Environmental Microbiology, 2021, v. 23, n. 2, p. 1199, doi. 10.1111/1462-2920.15348

By:

Han, Shun;
Luo, Xuesong;
Hao, Xiuli;
Ouyang, Yang;
Zeng, Luyang;
Wang, Li;
Wen, Shilin;
Wang, Boren;
Van Nostrand, Joy D.;
Chen, Wenli;
Zhou, Jizhong;
Huang, Qiaoyun

Publication type:

Article

Links among extracellular enzymes, lignin degradation and cell growth establish the models to identify marine lignin‐utilizing bacteria.

Published in:

Environmental Microbiology, 2021, v. 23, n. 1, p. 160, doi. 10.1111/1462-2920.15289

By:

Wang, Xiaopeng;
Lin, Lu;
Zhou, Jizhong

Publication type:

Article

Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes.

Published in:

Environmental Microbiology, 2020, v. 22, n. 4, p. 1327, doi. 10.1111/1462-2920.14945

By:

Liang, Yuting;
Xiao, Xian;
Nuccio, Erin E.;
Yuan, Mengting;
Zhang, Na;
Xue, Kai;
Cohan, Frederick M.;
Zhou, Jizhong;
Sun, Bo

Publication type:

Article

Mechanisms of soil bacterial and fungal community assembly differ among and within islands.

Published in:

Environmental Microbiology, 2020, v. 22, n. 4, p. 1559, doi. 10.1111/1462-2920.14864

By:

Wang, Pandeng;
Li, Shao‐Peng;
Yang, Xian;
Zhou, Jizhong;
Shu, Wensheng;
Jiang, Lin

Publication type:

Article

Microbial community assembly differs across minerals in a rhizosphere microcosm.

Published in:

Environmental Microbiology, 2018, v. 20, n. 12, p. 4444, doi. 10.1111/1462-2920.14366

By:

Whitman, Thea;
Neurath, Rachel;
Perera, Adele;
Chu‐Jacoby, Ilexis;
Ning, Daliang;
Zhou, Jizhong;
Nico, Peter;
Pett‐Ridge, Jennifer;
Firestone, Mary

Publication type:

Article

Spatial scaling of forest soil microbial communities across a temperature gradient.

Published in:

Environmental Microbiology, 2018, v. 20, n. 10, p. 3504, doi. 10.1111/1462-2920.14303

By:

Deng, Ye;
Ning, Daliang;
Qin, Yujia;
Xue, Kai;
Wu, Liyou;
He, Zhili;
Yin, Huaqun;
Liang, Yuting;
Buzzard, Vanessa;
Michaletz, Sean T.;
Zhou, Jizhong

Publication type:

Article

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0196581

By:

Dignam, Bryony E. A.;
O’Callaghan, Maureen;
Condron, Leo M.;
Kowalchuk, George A.;
Van Nostrand, Joy D.;
Zhou, Jizhong;
Wakelin, Steven A.

Publication type:

Article

Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.

Published in:

PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0194663

By:

Christensen, Geoff A.;
Moon, JiWon;
Veach, Allison M.;
Mosher, Jennifer J.;
Wymore, Ann M.;
van Nostrand, Joy D.;
Zhou, Jizhong;
Hazen, Terry C.;
Arkin, Adam P.;
Elias, Dwayne A.

Publication type:

Article

Ocean acidification altered microbial functional potential in the Arctic Ocean.

Published in:

Limnology & Oceanography, 2023, v. 68, p. S217, doi. 10.1002/lno.12375

By:

Wang, Yu;
Zhang, Rui;
Yang, Yunfeng;
Tu, Qichao;
Zhou, Jizhong;
Jiao, Nianzhi

Publication type:

Article

Warming exacerbates the impact of nutrient enrichment on microbial functional potentials important to the nutrient cycling in shallow lake mesocosms.

Published in:

Limnology & Oceanography, 2021, v. 66, n. 6, p. 2481, doi. 10.1002/lno.11766

By:

Ren, Lijuan;
Liu, Yuanyuan;
Lauridsen, Torben L.;
Søndergaard, Martin;
Han, Boping;
Wang, Jianjun;
Jeppesen, Erik;
Zhou, Jizhong;
Wu, Qinglong L.

Publication type:

Article

Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 210, doi. 10.1186/1471-2164-13-210

By:

Dassa, Bareket;
Borovok, Ilya;
Lamed, Raphael;
Henrissat, Bernard;
Coutinho, Pedro;
Hemme, Christopher L.;
Yue Huang;
Jizhong Zhou;
Bayer, Edward A.

Publication type:

Article

Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 138, doi. 10.1186/1471-2164-13-138

By:

Clark, Melinda E.;
Zhili He;
Redding, Alyssa M.;
Joachimiak, Marcin P.;
Keasling, Jay D.;
Jizhong Z. Zhou;
Arkin, Adam P.;
Mukhopadhyay, Aindrila;
Fields, Matthew W.

Publication type:

Article

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-131

By:

Yunfeng Yang;
Harris, Daniel P.;
Feng Luo;
Wenlu Xiong;
Joachimiak, Marcin;
Liyou Wu;
Dehal, Paramvir;
Jacobsen, Janet;
Zamin Yang;
Palumbo, Anthony V.;
Arkin, Adam P.;
Jizhong Zhou

Publication type:

Article

Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-S2-S5

By:

Yunfeng Yang;
Mengxia Zhu;
Liyou Wu;
Jizhong Zhou

Publication type:

Article

Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-S1-S11

By:

Yunfeng Yang;
Harris, Daniel P.;
Feng Luo;
Liyou Wu;
Parsons, Andrea B.;
Palumbo, Anthony V.;
Jizhong Zhou

Publication type:

Article

Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-42

By:

Haichun Gao;
Xiaohu Wang;
Yang, Zamin K.;
Palzkill, Timothy;
Jizhong Zhou

Publication type:

Article

Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.

Published in:

BMC Genomics, 2007, v. 8, p. 1, doi. 10.1186/1471-2164-8-180

By:

Butler, Jessica E;
Qiang He;
Nevin, Kelly P;
Zhili He;
Jizhong Zhou;
Lovley, Derek R

Publication type:

Article

Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1.

Published in:

BMC Genomics, 2006, v. 7, p. 1, doi. 10.1186/1471-2164-7-76

By:

Gao, Weimin;
Liu, Yongqing;
Giometti, Carol S;
Tollaksen, Sandra L;
Khare, Tripti;
Wu, Liyou;
Klingeman, Dawn M;
Fields, Matthew W;
Zhou, Jizhong

Publication type:

Article

The unseen world: environmental microbial sequencing and identification methods for ecologists.

Published in:

Frontiers in Ecology & the Environment, 2014, v. 12, n. 4, p. 224, doi. 10.1890/130055

By:

Zimmerman, Naupaka;
Izard, Jacques;
Klatt, Christian;
Zhou, Jizhong;
Aronson, Emma

Publication type:

Article

Approaches to advance scientific understanding of macrosystems ecology.

Published in:

Frontiers in Ecology & the Environment, 2014, v. 12, n. 1, p. 15, doi. 10.1890/130019

By:

Levy, Ofir;
Ball, Becky A.;
Bond-Lamberty, Ben;
Cheruvelil, Rendra S.;
Finley, Andrew O.;
Lottig, Noah R.;
Punyasena, Surangi W.;
Jingfeng Xia;
Jizhong Zhou;
Buckley, Lauren B.;
Filstrup, Christopher T.;
Keitt, Tim H.;
Kellner, James R.;
Knapp, Alan K.;
Richardson, Andrew D.;
Tcheng, David;
Toomey, Michael;
Vargas, Rodrigo;
Voordeckers, James W.;
Wagner, Tyler

Publication type:

Article

A dynamically growing self-organizing tree (DGSOT) for hierarchical clustering gene expression profiles.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2605, doi. 10.1093/bioinformatics/bth292

By:

Feng Luo;
Latifur Khan;
Farokh Bastani;
I-Ling Yen;
Jizhong Zhou

Publication type:

Article

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.

Published in:

Bioinformatics, 2002, v. 18, n. 11, p. 1432

By:

Xu, Dong;
Li, Guangshan;
Wu, Liyou;
Zhou, Jizhong;
Xu, Ying

Publication type:

Article

Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis.

Published in:

ICES Journal of Marine Science / Journal du Conseil, 2016, v. 73, n. 3, p. 865, doi. 10.1093/icesjms/fsv187

By:

Yu Wang;
Rui Zhang;
Qiang Zheng;
Ye Deng;
Van Nostrand, Joy D.;
Jizhong Zhou;
Nianzhi Jiao

Publication type:

Article

Microbiological Characteristics in a Zero-Valent Iron Reactive Barrier.

Published in:

Environmental Monitoring & Assessment, 2002, v. 77, n. 3, p. 293, doi. 10.1023/A:1016092808563

By:

Gu, Baohua;
Watson, David B.;
Wu, Liyou;
Phillips, Debra H.;
White, David C.;
Zhou, Jizhong

Publication type:

Article

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27857-6

By:

Dai, Tianjiao;
Wen, Donghui;
Bates, Colin T.;
Wu, Linwei;
Guo, Xue;
Liu, Suo;
Su, Yifan;
Lei, Jiesi;
Zhou, Jizhong;
Yang, Yunfeng

Publication type:

Article

Functional Gene Composition, Diversity and Redundancy in Microbial Stream Biofilm Communities.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123179

By:

Dopheide, Andrew;
Lear, Gavin;
He, Zhili;
Zhou, Jizhong;
Lewis, Gillian D.

Publication type:

Article

Effects of Substrate Addition on Soil Respiratory Carbon Release Under Long-Term Warming and Clipping in a Tallgrass Prairie.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0114203

By:

Jia, Xiaohong;
Zhou, Xuhui;
Luo, Yiqi;
Xue, Kai;
Xue, Xian;
Xu, Xia;
Yang, Yuanhe;
Wu, Liyou;
Zhou, Jizhong

Publication type:

Article

Functional Potential of Soil Microbial Communities in the Maize Rhizosphere.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112609

By:

Li, Xiangzhen;
Rui, Junpeng;
Xiong, Jingbo;
Li, Jiabao;
He, Zhili;
Zhou, Jizhong;
Yannarell, Anthony C.;
Mackie, Roderick I.

Publication type:

Article

Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104427

By:

Vigneron, Adrien;
Cruaud, Perrine;
Roussel, Erwan G.;
Pignet, Patricia;
Caprais, Jean-Claude;
Callac, Nolwenn;
Ciobanu, Maria-Cristina;
Godfroy, Anne;
Cragg, Barry A.;
Parkes, John R.;
Van Nostrand, Joy D.;
He, Zhili;
Zhou, Jizhong;
Toffin, Laurent

Publication type:

Article