Works matching Viral genomes

Results: 5000

Accumulation of copy-back viral genomes during respiratory syncytial virus infection is preceded by diversification of the copy-back viral genome population followed by selection.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac091

By:

Felt, Sébastien A;
Achouri, Emna;
Faber, Sydney R;
López, Carolina B

Publication type:

Article

Clinical Significance of Viral Genome Persistence in the Myocardium of Patients with Dilated Cardiomyopathy.

Published in:

Intervirology, 2016, v. 58, n. 6, p. 350, doi. 10.1159/000443375

By:

Nowalany-Kozielska, Ewa;
Kozieł, Monika;
Domal-Kwiatkowska, Dorota;
Wojciechowska, Celina;
Jacheć, Wojciech;
Kawecki, Damian;
Tomasik, andrzej;
Przywara-Chowaniec, Brygida;
Węglarz, Ludmiła;
Reichman-Warmusz, Edyta;
Wojnicz, Romuald

Publication type:

Article

Engineering large viral DNA genomes using the CRISPR-Cas9 system.

Published in:

Microbiology & Immunology, 2014, v. 58, n. 9, p. 513, doi. 10.1111/1348-0421.12180

By:

Suenaga, Tadahiro;
Kohyama, Masako;
Hirayasu, Kouyuki;
Arase, Hisashi

Publication type:

Article

Unexpected lessons from the neglected: How defective viral genomes became important again.

Published in:

PLoS Pathogens, 2019, v. 15, n. 01, p. 1, doi. 10.1371/journal.ppat.1007450

By:

López, Carolina B.

Publication type:

Article

KSHV encoded ORF59 modulates histone arginine methylation of the viral genome to promote viral reactivation.

Published in:

PLoS Pathogens, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.ppat.1006482

By:

Strahan, Roxanne C.;
McDowell-Sargent, Maria;
Uppal, Timsy;
Purushothaman, Pravinkumar;
Verma, Subhash C.

Publication type:

Article

Maize Elongin C interacts with the viral genome-linked protein, VPg, of Sugarcane mosaic virus and facilitates virus infection.

Published in:

New Phytologist, 2014, v. 203, n. 4, p. 1291, doi. 10.1111/nph.12890

By:

Zhu, Min;
Chen, Yuting;
Ding, Xin Shun;
Webb, Stephen L.;
Zhou, Tao;
Nelson, Richard S.;
Fan, Zaifeng

Publication type:

Article

Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00469

By:

Gupta, Ankit;
Kumar, Sanjiv;
Prasoodanan, Vishnu P. K.;
Harish, K.;
Sharma, Ashok K.;
Sharma, Vineet K.

Publication type:

Article

VirusTAP: Viral Genome-Targeted Assembly Pipeline.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00032

By:

Akifumi Yamashita;
Tsuyoshi Sekizuka;
Makoto Kuroda;
Schürch, Anita;
Yoshinori Ito;
Zagordi, Osvaldo

Publication type:

Article

Nanoparticle-mediated delivery of oncolytic viral genomes: an innovative strategy for tumor-targeted immunotherapy.

Published in:

Cancer Nanotechnology (1868-6958), 2025, v. 16, n. 1, p. 1, doi. 10.1186/s12645-025-00322-5

By:

Yang, Junhan;
Liu, Binlei

Publication type:

Article

A Novel Approach of Antiviral Drugs Targeting Viral Genomes.

Published in:

Microorganisms, 2022, v. 10, n. 8, p. 1552, doi. 10.3390/microorganisms10081552

By:

Hoang, Phuong Thi;
Luong, Quynh Xuan Thi;
Ayun, Ramadhani Qurrota;
Lee, Yongjun;
Vo, Thuy Thi Bich;
Kim, Taehyun;
Lee, Sukchan

Publication type:

Article

Potential of the Other Genetic Information Coded by the Viral RNA Genomes as Antiviral Target.

Published in:

Pharmaceuticals (14248247), 2019, v. 12, n. 1, p. 38, doi. 10.3390/ph12010038

By:

Berzal-Herranz, Alfredo;
Romero-López, Cristina;
Berzal-Herranz, Beatriz;
Ramos-Lorente, Sara

Publication type:

Article

The Role of Nuclear Antiviral Factors against Invading DNA Viruses: The Immediate Fate of Incoming Viral Genomes.

Published in:

Viruses (1999-4915), 2016, v. 8, n. 10, p. 290, doi. 10.3390/v8100290

By:

Tetsuro Komatsu;
Kyosuke Nagata;
Wodrich, Harald

Publication type:

Article

VirAmp: a galaxy-based viral genome assembly pipeline.

Published in:: GigaScience, 2015, v. 4, n. 1, p. N.PAG, doi. 10.1186/s13742-015-0060-y
Publication type:: Article

The landscape of 142 Epstein–Barr viral whole genomes in gastric cancer.

Published in:

Journal of Gastroenterology, 2025, v. 60, n. 1, p. 55, doi. 10.1007/s00535-024-02170-3

By:

Kojima, Yuki;
Hamada, Motoharu;
Naruse, Azumi;
Goto, Kimitoshi;
Khine, Htet Thiri;
Arai, Haruto;
Akutsu, Yuta;
Satou, Akira;
Nakaguro, Masato;
Kato, Seiichi;
Kodera, Yasuhiro;
Yatabe, Yasushi;
Torii, Yuka;
Kawada, Jun-ichi;
Murata, Takayuki;
Kimura, Hiroshi;
Takiguchi, Shuji;
Inagaki, Hiroshi;
Kataoka, Hiromi;
Okuno, Yusuke

Publication type:

Article

Discovering and sequencing new plant viral genomes by next-generation sequencing: description of a practical pipeline.

Published in:

Annals of Applied Biology, 2017, v. 170, n. 3, p. 301, doi. 10.1111/aab.12345

By:

Blawid, R.;
Silva, J.M.F.;
Nagata, T.

Publication type:

Article

Unveiling the biology of defective viral genomes in vitro and in vivo: implications for gene expression and pathogenesis of coronavirus.

Published in:

Virology Journal, 2023, v. 20, n. 1, p. 1, doi. 10.1186/s12985-023-02189-7

By:

Lin, Ching-Hung;
Chen, BoJia;
Chao, Day-Yu;
Hsieh, Feng-Cheng;
Yang, Chun-Chun;
Hsu, Hsuan-Wei;
Tam, Hon-Man-Herman;
Wu, Hung-Yi

Publication type:

Article

Bioinformatic analysis of defective viral genomes in SARS-CoV-2 and its impact on population infection characteristics.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1341906

By:

Zhaobin Xu;
Qingzhi Peng;
Jian Song;
Hongmei Zhang;
Dongqing Wei;
Demongeot, Jacques;
Qiangcheng Zeng

Publication type:

Article

Comparisons of classification methods for viral genomes and protein families using alignment-free vectorization.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2018, v. 17, n. 4, p. N.PAG, doi. 10.1515/sagmb-2018-0004

By:

Huang, Hsin-Hsiung;
Hao, Shuai;
Alarcon, Saul;
Yang, Jie

Publication type:

Article

Characteristics of the a sequence of the duck Plague virus genome and specific cleavage of the viral genome based on the a sequence.

Published in:

Veterinary Research, 2024, v. 55, n. 1, p. 1, doi. 10.1186/s13567-023-01256-9

By:

Yang, Qiao;
Feng, Yaya;
Zhang, Yuanxin;
Wang, Mingshu;
Jia, Renyong;
Zhu, Dekang;
Chen, Shun;
Liu, Mafeng;
Zhao, Xinxin;
Wu, Ying;
Zhang, Shaqiu;
Tian, Bin;
Ou, Xumin;
Mao, Sai;
Huang, Juan;
Gao, Qun;
Sun, Di;
Wu, Zhen;
He, Yu;
Zhang, Ling

Publication type:

Article

It’s in the mix: Reassortment of segmented viral genomes.

Published in:

PLoS Pathogens, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.ppat.1007200

By:

Lowen, Anice C.

Publication type:

Article

Chikungunya Virus RNA Secondary Structures Impact Defective Viral Genome Production.

Published in:

Microorganisms, 2024, v. 12, n. 9, p. 1794, doi. 10.3390/microorganisms12091794

By:

Levi, Laura I.;
Madden, Emily A.;
Boussier, Jeremy;
Erazo, Diana;
Sanders, Wes;
Vallet, Thomas;
Bernhauerova, Veronika;
Moorman, Nathaniel J.;
Heise, Mark T.;
Vignuzzi, Marco

Publication type:

Article

Occurrence of Antibiotics, Antibiotic Resistance Genes and Viral Genomes in Wastewater Effluents and Their Treatment by a Pilot Scale Nanofiltration Unit.

Published in:

Membranes, 2021, v. 11, n. 1, p. 9, doi. 10.3390/membranes11010009

By:

Cristóvão, Maria Beatriz;
Tela, Solomon;
Silva, Andreia Filipa;
Oliveira, Micaela;
Bento-Silva, Andreia;
Bronze, Maria Rosário;
Crespo, Maria Teresa Barreto;
Crespo, João Goulão;
Nunes, Mónica;
Pereira, Vanessa Jorge

Publication type:

Article

DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 5, p. 1114, doi. 10.3390/v14051114

By:

Olmo-Uceda, Maria J.;
Muñoz-Sánchez, Juan C.;
Lasso-Giraldo, Wilberth;
Arnau, Vicente;
Díaz-Villanueva, Wladimiro;
Elena, Santiago F.

Publication type:

Article

Preferential cleavage of the coronavirus defective viral genome by cellular endoribonuclease with characteristics of RNase L.

Published in:

Virology Journal, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12985-024-02549-x

By:

Lin, Ching-Hung;
Lin, Hsuan-Yung;
Yang, Chun-Chun;
Hsu, Hsuan-Wei;
Hsieh, Feng-Cheng;
Yang, Cheng-Yao;
Wu, Hung-Yi

Publication type:

Article

Identification of the protein coding capability of coronavirus defective viral genomes by mass spectrometry.

Published in:

Virology Journal, 2023, v. 20, n. 1, p. 1, doi. 10.1186/s12985-023-02252-3

By:

Lin, Ching-Hung;
Hsieh, Feng-Cheng;
Lai, Chien-Chen;
Wang, Wei-Chen;
Kuo, Cheng-Yu;
Yang, Chun-Chun;
Hsu, Hsuan-Wei;
Tam, Hon-Man-Herman;
Yang, Cheng-Yao;
Wu, Hung-Yi

Publication type:

Article

Replication-Coupled Recruitment of Viral and Cellular Factors to Herpes Simplex Virus Type 1 Replication Forks for the Maintenance and Expression of Viral Genomes.

Published in:

PLoS Pathogens, 2017, v. 13, n. 1, p. 1, doi. 10.1371/journal.ppat.1006166

By:

Dembowski, Jill A.;
Dremel, Sarah E.;
DeLuca, Neal A.

Publication type:

Article

ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples.

Published in:

PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0222271

By:

Tampuu, Ardi;
Bzhalava, Zurab;
Dillner, Joakim;
Vicente, Raul

Publication type:

Article

VirGenA: a reference-based assembler for variable viral genomes.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 15, doi. 10.1093/bib/bbx079

By:

Fedonin, Gennady G;
Fantin, Yury S;
Favorov, Alexnader V;
Shipulin, German A;
Neverov, Alexey D

Publication type:

Article

Propagation and Characterization of Influenza Virus Stocks That Lack High Levels of Defective Viral Genomes and Hemagglutinin Mutations.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00326

By:

López, Carolina B.;
Jia Xue;
Chambers, Benjamin S.;
Hensley, Scott E.

Publication type:

Article

INVERTED REPEATS IN VIRAL GENOMES.

Published in:

Fluctuation & Noise Letters, 2005, v. 5, n. 2, p. L193

By:

Spanó, M.;
Lillo, F.;
Miccichè, S.;
Mantegna, R. N.;
Ebeling, Werner;
Spagnolo, Bernardo

Publication type:

Article

Diagnostic Performance of a Magnetic Field-Enhanced Agglutination Readout in Detecting Either Viral Genomes or Host Antibodies in Arbovirus Infection.

Published in:

Microorganisms, 2021, v. 9, n. 4, p. 674, doi. 10.3390/microorganisms9040674

By:

Leon, Fanny;
Pinchon, Elena;
Temurok, Nevzat;
Morvan, François;
Vasseur, Jean-Jacques;
Clot, Martine;
Foulongne, Vincent;
Cantaloube, Jean-François;
Vande Perre, Philippe;
Molès, Jean-Pierre;
Daynès, Aurélien;
Fournier-Wirth, Chantal

Publication type:

Article

Viral genome changes and the impact of viral genome persistence in myocardium of patients with inflammatory cardiomyopathy.

Published in:

2018

By:

Mlejnek, Dalibor;
Krejci, Jan;
Hude, Petr;
Ozabalova, Eva;
Zampachova, Vita;
Stepanova, Radka;
Svobodová, Iva;
Freiberger, Tomas;
Nemcova, Eva;
Spinarova, Lenka

Publication type:

journal article

Characterization of the viral genome of Omicron variants of SARS-CoV-2 circulating in Tripura, a remote frontier state in Northeastern India.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-10048-z

By:

Chakrabarti, Ankan;
Majumder, Saikat;
Sarkar, Apurba;
Majumdar, Tapan

Publication type:

Article

Prediction of conserved long-range RNA-RNA interactions in full viral genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 19, p. 2928, doi. 10.1093/bioinformatics/btw323

By:

Fricke, Markus;
Marz, Manja

Publication type:

Article

Alignment-free detection of local similarity among viral and bacterial genomes.

Published in:

Bioinformatics, 2011, v. 27, n. 11, p. 1466, doi. 10.1093/bioinformatics/btr176

By:

Domazet-Lošo, Mirjana;
Haubold, Bernhard

Publication type:

Article

Annotation of selection strengths in viral genomes.

Published in:

Bioinformatics, 2007, v. 23, n. 22, p. 2978, doi. 10.1093/bioinformatics/btm472

By:

Stephen McCauley;
Saskia de Groot;
Thomas Mailund;
Jotun Hein

Publication type:

Article

Rapid PCR-Based Nanopore Adaptive Sequencing Improves Sensitivity and Timeliness of Viral Clinical Detection and Genome Surveillance.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.929241

By:

Lin, Yanfeng;
Dai, Yan;
Liu, Yuqi;
Ren, Zhuli;
Guo, Hao;
Li, Zhenzhong;
Li, Jinhui;
Wang, Kaiying;
Yang, Lang;
Zhang, Shuang;
Liu, Hongbo;
Jia, Leili;
Ni, Ming;
Li, Peng;
Song, Hongbin

Publication type:

Article

Viral genome sequencing by random priming methods.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-5

By:

Djikeng, Appolinaire;
Halpin, Rebecca;
Kuzmickas, Ryan;
DePasse, Jay;
Feldblyum, Jeremy;
Sengamalay, Naomi;
Afonso, Claudio;
Xinsheng Zhang;
Anderson, Norman G.;
Ghedin, Elodie;
Spiro, David J.

Publication type:

Article

TRIM21 Promotes cGAS and RIG-I Sensing of Viral Genomes during Infection by Antibody-Opsonized Virus.

Published in:

PLoS Pathogens, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.ppat.1005253

By:

Watkinson, Ruth E.;
McEwan, William A.;
Tam, Jerry C. H.;
Vaysburd, Marina;
James, Leo C.

Publication type:

Article

Coordinated Function of Cellular DEAD-Box Helicases in Suppression of Viral RNA Recombination and Maintenance of Viral Genome Integrity.

Published in:

PLoS Pathogens, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.ppat.1004680

By:

Chuang, Chingkai;
Prasanth, K. Reddisiva;
Nagy, Peter D.

Publication type:

Article

A Viral Genome Landscape of RNA Polyadenylation from KSHV Latent to Lytic Infection.

Published in:

PLoS Pathogens, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.ppat.1003749

By:

Majerciak, Vladimir;
Ni, Ting;
Yang, Wenjing;
Meng, Bowen;
Zhu, Jun;
Zheng, Zhi-Ming

Publication type:

Article

Defective Viral Genomes Arising <i>In Vivo</i> Provide Critical Danger Signals for the Triggering of Lung Antiviral Immunity.

Published in:

PLoS Pathogens, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.ppat.1003703

By:

Tapia, Karla;
Kim, Won-keun;
Sun, Yan;
Mercado-López, Xiomara;
Dunay, Emily;
Wise, Megan;
Adu, Michael;
López, Carolina B.

Publication type:

Article

HCMV-Infected Cells Maintain Efficient Nucleotide Excision Repair of the Viral Genome while Abrogating Repair of the Host Genome.

Published in:

PLoS Pathogens, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.ppat.1003038

By:

O'Dowd, John M.;
Zavala, Anamaria G.;
Brown, Celeste J.;
Mori, Toshio;
Fortunato, Elizabeth A.

Publication type:

Article

ZWA: Viral genome assembly and characterization hindrances from virus-host chimeric reads; a refining approach.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009304

By:

Dovrolis, Nikolas;
Kassela, Katerina;
Konstantinidis, Konstantinos;
Kouvela, Adamantia;
Veletza, Stavroula;
Karakasiliotis, Ioannis

Publication type:

Article

UVC disinfects SARS-CoV-2 by induction of viral genome damage without apparent effects on viral morphology and proteins.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93231-7

By:

Lo, Chieh-Wen;
Matsuura, Ryosuke;
Iimura, Kazuki;
Wada, Satoshi;
Shinjo, Atsushi;
Benno, Yoshimi;
Nakagawa, Masaru;
Takei, Masami;
Aida, Yoko

Publication type:

Article

The stability of herpes simplex virus type I genomes in infected Vero cells undergoing viral induced apoptosis.

Published in:

Journal of NeuroVirology, 2006, v. 12, n. 5, p. 375, doi. 10.1080/13550280600975358

By:

Su, Ying-Hsiu;
Zhang, Xianchao;
Aiamkitsumrit, Benjamas;
Tang, Qiyi;
Maul, Gerd;
Fraser, Nigel W.;
Block, Timothy M.

Publication type:

Article

HPV+ oropharyngeal squamous cell carcinomas from patients with two tumors display synchrony of viral genomes yet discordant mutational profiles and signatures.

Published in:

Carcinogenesis, 2021, v. 42, n. 1, p. 14, doi. 10.1093/carcin/bgaa111

By:

Faden, Daniel L;
Langenbucher, Adam;
Kuhs, Krystle;
Lewis, James S;
Mirabello, Lisa;
Yeager, Meredith;
Boland, Joseph F;
Bass, Sara;
Steinberg, Mia;
Cullen, Michael;
Lawrence, Michael S;
Ferris, Robert L

Publication type:

Article

Genome binning of viral entities from bulk metagenomics data.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28581-5

By:

Johansen, Joachim;
Plichta, Damian R.;
Nissen, Jakob Nybo;
Jespersen, Marie Louise;
Shah, Shiraz A.;
Deng, Ling;
Stokholm, Jakob;
Bisgaard, Hans;
Nielsen, Dennis Sandris;
Sørensen, Søren J.;
Rasmussen, Simon

Publication type:

Article

Comprehensive Analysis of LANA Interacting Proteins Essential for Viral Genome Tethering and Persistence.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074662

By:

Verma, Subhash C.;
Cai, Qiliang;
Kreider, Edward;
Lu, Jie;
Robertson, Erle S.

Publication type:

Article

An Experimental and Computational Evolution-Based Method to Study a Mode of Co-evolution of Overlapping Open Reading Frames in the AAV2 Viral Genome.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066211

By:

Kawano, Yasuhiro;
Neeley, Shane;
Adachi, Kei;
Nakai, Hiroyuki

Publication type:

Article