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Entinostat induces antitumor immune responses through immune editing of tumor neoantigens.
Published in:
2021
By:
- Truong, Andrew S.;
- Mi Zhou;
- Krishnan, Bhavani;
- Takanobu Utsumi;
- Manocha, Ujjawal;
- Stewart, Kyle G.;
- Beck, Wolfgang;
- Rose, Tracy L.;
- Milowsky, Matthew I.;
- Xiaping He;
- Smith, Christof C.;
- Bixby, Lisa M.;
- Perou, Charles M.;
- Wobker, Sara E.;
- Bailey, Sean T.;
- Vincent, Benjamin G.;
- Kim, William Y.;
- Zhou, Mi;
- Utsumi, Takanobu;
- He, Xiaping
Publication type:
journal article
Progesterone Receptor Isoform Ratio: A Breast Cancer Prognostic and Predictive Factor for Antiprogestin Responsiveness.
Published in:
2017
By:
- Rojas, Paola A.;
- May, María;
- Sequeira, Gonzalo R.;
- Elia, Andrés;
- Alvarez, Michelle;
- Martínez, Paula;
- Gonzalez, Pedro;
- Hewitt, Stephen;
- Xiaping He;
- Perou, Charles M.;
- Molinolo, Alfredo;
- Gibbons, Luz;
- Abba, Martin C.;
- Gass, Hugo;
- Lanari, Claudia;
- He, Xiaping
Publication type:
journal article
Exploring the protective effect and molecular mechanism of betulin in Alzheimer's disease based on network pharmacology, molecular docking and experimental validation.
Published in:
Molecular Medicine Reports, 2024, v. 30, n. 6, p. N.PAG, doi. 10.3892/mmr.2024.13356
By:
- Wang, Na;
- Cui, Jiali;
- Sun, Ziteng;
- Chen, Fan;
- He, Xiaping
Publication type:
Article
Identification of Differential Genes of DNA Methylation Associated With Alzheimer's Disease Based on Integrated Bioinformatics and Its Diagnostic Significance.
Published in:
Frontiers in Aging Neuroscience, 2022, v. 14, p. 1, doi. 10.3389/fnagi.2022.884367
By:
- Chen, Fan;
- Wang, Na;
- He, Xiaping
Publication type:
Article
The Protective Effect of Mangiferin on Formaldehyde-Induced HT22 Cell Damage and Cognitive Impairment.
Published in:
Pharmaceutics, 2023, v. 15, n. 6, p. 1568, doi. 10.3390/pharmaceutics15061568
By:
- Chen, Fan;
- Wang, Na;
- Tian, Xinyan;
- Su, Juan;
- Qin, Yan;
- He, Rongqiao;
- He, Xiaping
Publication type:
Article
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery.
Published in:
Nucleic Acids Research, 2010, v. 38, n. 18, p. e178, doi. 10.1093/nar/gkq622
By:
- Wang, Kai;
- Singh, Darshan;
- Zeng, Zheng;
- Coleman, Stephen J.;
- Huang, Yan;
- Savich, Gleb L.;
- He, Xiaping;
- Mieczkowski, Piotr;
- Grimm, Sara A.;
- Perou, Charles M.;
- MacLeod, James N.;
- Chiang, Derek Y.;
- Prins, Jan F.;
- Liu, Jinze
Publication type:
Article
Molecular Cloning and Characterization of Two Pig Vasoactive Intestinal Polypeptide Receptors (VPAC<sub>1</sub>-R and VPAC<sub>2</sub>-R).
Published in:
DNA & Cell Biology, 2014, v. 33, n. 4, p. 259, doi. 10.1089/dna.2013.2235
By:
- He, Xiaping;
- Meng, Fengyan;
- Wang, Yajun;
- Li, Juan
Publication type:
Article
Micro-Scale Genomic DNA Copy Number Aberrations as Another Means of Mutagenesis in Breast Cancer.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051719
By:
- Hann-Hsiang Chao;
- Xiaping He;
- Parker, Joel S.;
- Wei Zhao;
- Perou, Charles M.
Publication type:
Article
Molecular signatures of in situ to invasive progression for basal-like breast cancers: An integrated mouse model and human DCIS study.
Published in:
NPJ Breast Cancer, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41523-022-00450-w
By:
- Thennavan, Aatish;
- Garcia-Recio, Susana;
- Liu, Siyao;
- He, Xiaping;
- Perou, Charles M.
Publication type:
Article
FOXA1 and adaptive response determinants to HER2 targeted therapy in TBCRC 036.
Published in:
NPJ Breast Cancer, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41523-021-00258-0
By:
- Angus, Steven P.;
- Stuhlmiller, Timothy J.;
- Mehta, Gaurav;
- Bevill, Samantha M.;
- Goulet, Daniel R.;
- Olivares-Quintero, J. Felix;
- East, Michael P.;
- Tanioka, Maki;
- Zawistowski, Jon S.;
- Singh, Darshan;
- Sciaky, Noah;
- Chen, Xin;
- He, Xiaping;
- Rashid, Naim U.;
- Chollet-Hinton, Lynn;
- Fan, Cheng;
- Soloway, Matthew G.;
- Spears, Patricia A.;
- Jefferys, Stuart;
- Parker, Joel S.
Publication type:
Article
Mutation of GATA3 in human breast tumors.
Published in:
Oncogene, 2004, v. 23, n. 46, p. 7669, doi. 10.1038/sj.onc.1207966
By:
- Usary, Jerry;
- Llaca, Victor;
- Karaca, Gamze;
- Presswala, Shafaq;
- Karaca, Mehmet;
- He, Xiaping;
- Langerød, Anita;
- Kåresen, Rolf;
- Oh, Daniel S.;
- Dressler, Lynn G.;
- Lønning, Per E.;
- Strausberg, Robert L.;
- Chanock, Stephen;
- Børresen-Dale, Anne-Lise;
- Perou, Charles M.
Publication type:
Article
The potential diagnostic accuracy of urine formaldehyde levels in Alzheimer's disease: A systematic review and meta-analysis.
Published in:
Frontiers in Aging Neuroscience, 2022, v. 14, p. 01, doi. 10.3389/fnagi.2022.1057059
By:
- Fan Chen;
- Na Wang;
- Xinyan Tian;
- Yan Qin;
- Juan Su;
- Rongqiao He;
- Xiaping He
Publication type:
Article
EGFR associated expression profiles vary with breast tumor subtype.
Published in:
BMC Genomics, 2007, v. 8, p. 258, doi. 10.1186/1471-2164-8-258
By:
- Hoadley, Katherine A;
- Weigman, Victor J;
- Cheng Fan;
- Sawyer, Lynda R;
- Xiaping He;
- Troester, Melissa A;
- Sartor, Carolyn I;
- Rieger-House, Thais;
- Bernard, Philip S;
- Carey, Lisa A;
- Perou, Charles M
Publication type:
Article
The molecular portraits of breast tumors are conserved across microarray platforms.
Published in:
BMC Genomics, 2006, v. 7, p. 96, doi. 10.1186/1471-2164-7-96
By:
- Hu, Zhiyuan;
- Fan, Cheng;
- Oh, Daniel S;
- Marron, JS;
- He, Xiaping;
- Qaqish, Bahjat F;
- Livasy, Chad;
- Carey, Lisa A;
- Reynolds, Evangeline;
- Dressler, Lynn;
- Nobel, Andrew;
- Parker, Joel;
- Ewend, Matthew G;
- Sawyer, Lynda R;
- Wu, Junyuan;
- Liu, Yudong;
- Nanda, Rita;
- Tretiakova, Maria;
- Ruiz Orrico, Alejandra;
- Dreher, Donna
Publication type:
Article
Cross-species DNA copy number analyses identifies multiple 1q21-q23 subtype-specific driver genes for breast cancer.
Published in:
Breast Cancer Research & Treatment, 2015, v. 152, n. 2, p. 347, doi. 10.1007/s10549-015-3476-2
By:
- Silva, Grace;
- He, Xiaping;
- Parker, Joel;
- Gatza, Michael;
- Carey, Lisa;
- Hou, Jack;
- Moulder, Stacy;
- Marcom, Paul;
- Ma, Jian;
- Rosen, Jeffrey;
- Perou, Charles
Publication type:
Article
Characterization of cell lines derived from breast cancers and normal mammary tissues for the study of the intrinsic molecular subtypes.
Published in:
Breast Cancer Research & Treatment, 2013, v. 142, n. 2, p. 237, doi. 10.1007/s10549-013-2743-3
By:
- Prat, Aleix;
- Karginova, Olga;
- Parker, Joel S.;
- Fan, Cheng;
- He, Xiaping;
- Bixby, Lisa;
- Harrell, J. Chuck;
- Roman, Erick;
- Adamo, Barbara;
- Troester, Melissa;
- Perou, Charles M.
Publication type:
Article
Basal-like Breast cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival.
Published in:
Breast Cancer Research & Treatment, 2012, v. 133, n. 3, p. 865, doi. 10.1007/s10549-011-1846-y
By:
- Weigman, Victor;
- Chao, Hann-Hsiang;
- Shabalin, Andrey;
- He, Xiaping;
- Parker, Joel;
- Nordgard, Silje;
- Grushko, Tatyana;
- Huo, Dezheng;
- Nwachukwu, Chika;
- Nobel, Andrew;
- Kristensen, Vessela;
- Børresen-Dale, Anne-Lise;
- Olopade, Olufunmilayo;
- Perou, Charles
Publication type:
Article
Genomic analysis identifies unique signatures predictive of brain, lung, and liver relapse.
Published in:
Breast Cancer Research & Treatment, 2012, v. 132, n. 2, p. 523, doi. 10.1007/s10549-011-1619-7
By:
- Harrell, J.;
- Prat, Aleix;
- Parker, Joel;
- Fan, Cheng;
- He, Xiaping;
- Carey, Lisa;
- Anders, Carey;
- Ewend, Matthew;
- Perou, Charles
Publication type:
Article
Resveratrol Attenuates Formaldehyde Induced Hyperphosphorylation of Tau Protein and Cytotoxicity in N2a Cells.
Published in:
Frontiers in Neuroscience, 2017, v. 10/11, p. 1, doi. 10.3389/fnins.2016.00598
By:
- Xiaping He;
- Zhenhui Li;
- Rizak, Joshua D.;
- Shihao Wu;
- Zhengbo Wang;
- Rongqiao He;
- Min Su;
- Dongdong Qin;
- Jingkun Wang;
- Xintian Hu;
- Coulson, Elizabeth J.;
- Rylett, Rebecca Jane
Publication type:
Article
Overexpression of focal adhesion kinase, a protein tyrosine kinase, in ovarian carcinoma.
Published in:
1999
By:
- Judson, Patricia L.;
- He, Xiaping;
- Cance, William G.;
- Van Le, Linda;
- Judson, P L;
- He, X;
- Cance, W G;
- Van Le, L
Publication type:
journal article
Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: comparison of gene expression profiling approaches.
Published in:
BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3365-5
By:
- Turnbull, Arran K.;
- Selli, Cigdem;
- Martinez-Perez, Carlos;
- Fernando, Anu;
- Renshaw, Lorna;
- Keys, Jane;
- Figueroa, Jonine D.;
- He, Xiaping;
- Tanioka, Maki;
- Munro, Alison F.;
- Murphy, Lee;
- Fawkes, Angie;
- Clark, Richard;
- Coutts, Audrey;
- Perou, Charles M.;
- Carey, Lisa A.;
- Dixon, J. Michael;
- Sims, Andrew H.
Publication type:
Article
FGFR4 regulates tumor subtype differentiation in luminal breast cancer and metastatic disease.
Published in:
2020
By:
- Garcia-Recio, Susana;
- Thennavan, Aatish;
- East, Michael P.;
- Parker, Joel S.;
- Cejalvo, Juan M.;
- Garay, Joseph P.;
- Hollern, Daniel P.;
- Xiaping He;
- Mott, Kevin R.;
- Galván, Patricia;
- Cheng Fan;
- Selitsky, Sara R.;
- Coffey, Alisha R.;
- Marron, David;
- Brasó-Maristany, Fara;
- Burgués, Octavio;
- Albanell, Joan;
- Rojo, Federico;
- Lluch, Ana;
- Martinez de Dueñas, Eduardo
Publication type:
journal article
Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer.
Published in:
2018
By:
- Siegel, Marni B.;
- Xiaping He;
- Hoadley, Katherine A.;
- Hoyle, Alan;
- Pearce, Julia B.;
- Garrett, Amy L.;
- Kumar, Sunil;
- Moylan, Vincent J.;
- Brady, Claudia M.;
- Van Swearingen, Amanda E. D.;
- Marron, David;
- Gupta, Gaorav P.;
- Thorne, Leigh B.;
- Kieran, Niamh;
- Livasy, Chad;
- Mardis, Elaine R.;
- Parker, Joel S.;
- Mengjie Chen;
- Anders, Carey K.;
- Carey, Lisa A.
Publication type:
journal article
Correction: Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases.
Published in:
2017
By:
- Hoadley, Katherine A.;
- Siegel, Marni B.;
- Kanchi, Krishna L.;
- Miller, Christopher A.;
- Ding, Li;
- Zhao, Wei;
- He, Xiaping;
- Parker, Joel S.;
- Wendl, Michael C.;
- Fulton, Robert S.;
- Demeter, Ryan T.;
- Wilson, Richard K.;
- Carey, Lisa A.;
- Perou, Charles M.;
- Mardis, Elaine R.
Publication type:
corrected article
Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases.
Published in:
2016
By:
- Hoadley, Katherine A.;
- Siegel, Marni B.;
- Kanchi, Krishna L.;
- Miller, Christopher A.;
- Ding, Li;
- Zhao, Wei;
- He, Xiaping;
- Parker, Joel S.;
- Wendl, Michael C.;
- Fulton, Robert S.;
- Demeter, Ryan T.;
- Wilson, Richard K.;
- Carey, Lisa A.;
- Perou, Charles M.;
- Mardis, Elaine R.
Publication type:
journal article
A compact VEGF signature associated with distant metastases and poor outcomes.
Published in:
BMC Medicine, 2009, v. 7, p. 1, doi. 10.1186/1741-7015-7-9
By:
- Zhiyuan Hu;
- Cheng Fan;
- Livasy, Chad;
- Xiaping He;
- Oh, Daniel S.;
- Ewend, Matthew G.;
- Carey, Lisa A.;
- Subramanian, Subbaya;
- West, Robert;
- Ikpatt, Francis;
- Olopade, Olufunmilayo I.;
- van de Rijn, Matt;
- Perou, Charles M.
Publication type:
Article
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-419
By:
- Wei Zhao;
- Xiaping He;
- Hoadley, Katherine A.;
- Parker, Joel S.;
- Hayes, David Neil;
- Perou, Charles M.
Publication type:
Article
A probabilistic framework for aligning paired-end RNA-seq data.
Published in:
Bioinformatics, 2010, v. 26, n. 16, p. 1950, doi. 10.1093/bioinformatics/btq336
By:
- Yin Hu;
- Kai Wang;
- Xiaping He;
- Chiang, Derek Y.;
- Prins, Jan F.;
- Jinze Liu
Publication type:
Article
Viral oncolytic therapy of head and neck squamous cell carcinoma (HNSCC)
Published in:
2003
By:
- Wood, William A.;
- He, Xiaping;
- Yarbrough, Wendell G.
Publication type:
Abstract
Gene expression patterns associated with p53 status in breast cancer.
Published in:
BMC Cancer, 2006, v. 6, p. 276, doi. 10.1186/1471-2407-6-276
By:
- Troester, Melissa A.;
- Herschkowitz, Jason I.;
- Oh, Daniel S.;
- Xiaping He;
- Hoadley, Katherine A.;
- Barbier, Claire S.;
- Charles M. Perou
Publication type:
Article

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