Works matching DE "GENETIC transcription in bacteria"

Results: 290

Diurnal transcriptional variation is reduced in a nitrogen-fixing diatom endosymbiont.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae064

By:

Abresch, Heidi;
Bell, Tisza;
Miller, Scott R

Publication type:

Article

Competition for iron shapes metabolic antagonism between Bacillus subtilis and Pseudomonas marginalis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad001

By:

Lyng, Mark;
Jørgensen, Johan P B;
Schostag, Morten D;
Jarmusch, Scott A;
Aguilar, Diana K C;
Lozano-Andrade, Carlos N;
Kovács, Ákos T

Publication type:

Article

Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 4, p. 358, doi. 10.1038/nsmb.2801

By:

Cecere, Germano;
Hoersch, Sebastian;
O'Keeffe, Sean;
Sachidanandam, Ravi;
Grishok, Alla

Publication type:

Article

Bacterial transcription: Transcription factor sliding in live bacteria.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 8, p. 523, doi. 10.1038/nrmicro2844

By:

Kåhrström, Christina Tobin

Publication type:

Article

Modulation of the E. coli rpoH Temperature Sensor with Triptycene- Based Small Molecules.

Published in:

Angewandte Chemie, 2016, v. 128, n. 29, p. 8398, doi. 10.1002/ange.201601626

By:

Barros, Stephanie A.;
Yoon, Ina;
Chenoweth, David M.

Publication type:

Article

Metatranscriptome analysis of active microbial communities in produced water samples from the Marcellus Shale.

Published in:

Microbial Ecology, 2016, v. 72, n. 3, p. 571, doi. 10.1007/s00248-016-0811-z

By:

Vikram, Amit;
Lipus, Daniel;
Bibby, Kyle

Publication type:

Article

Molecular Ecology of nifH Genes and Transcripts Along a Chronosequence in Revegetated Areas of the Tengger Desert.

Published in:

Microbial Ecology, 2016, v. 71, n. 1, p. 150, doi. 10.1007/s00248-015-0657-9

By:

Wang, Jin;
Bao, Jing-Ting;
Li, Xin-Rong;
Liu, Yu-Bing

Publication type:

Article

Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria.

Published in:

Microbial Ecology, 2015, v. 69, n. 1, p. 146, doi. 10.1007/s00248-014-0445-y

By:

Deveau, Aurélie;
Barret, Matthieu;
Diedhiou, Abdala;
Leveau, Johan;
Boer, Wietse;
Martin, Francis;
Sarniguet, Alain;
Frey-Klett, Pascale

Publication type:

Article

DeNovo: virus-host sequence-based protein-protein interaction prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1144, doi. 10.1093/bioinformatics/btv737

By:

Eid, Fatma-Elzahraa;
El Hefnawi, Mahmoud;
Heath, Lenwood S.

Publication type:

Article

TSSer: an automated method to identify transcription start sites in prokaryotic genomes from differential RNA sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 971, doi. 10.1093/bioinformatics/btt752

By:

Jorjani, Hadi;
Zavolan, Mihaela

Publication type:

Article

Transcription: Unwinding transcriptional bursting.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 9, p. 574, doi. 10.1038/nrg3800

By:

Lokody, Isabel

Publication type:

Article

Transcriptomic Studies of the Effect of nod Gene-Inducing Molecules in Rhizobia: Different Weapons, One Purpose.

Published in:

Genes, 2018, v. 9, n. 1, p. 1, doi. 10.3390/genes9010001

By:

Jiménez-Guerrero, Irene;
Acosta-Jurado, Sebastián;
del Cerro, Pablo;
Navarro-Gómez, Pilar;
López-Baena, Francisco Javier;
Ollero, Francisco Javier;
Vinardell, José María;
Pérez-Montaño, Francisco

Publication type:

Article

Pervasive transcription: detecting functional RNAs in bacteria.

Published in:

Transcription (2154-1264), 2014, v. 5, n. 4, p. N.PAG, doi. 10.4161/21541272.2014.944039

By:

Lybecker, Meghan;
Bilusic, Ivana;
Raghavan, Rahul

Publication type:

Article

Transcriptional regulation of bacterial virulence gene expression by molecular oxygen and nitric oxide.

Published in:

Virulence, 2014, v. 5, n. 8, p. 794, doi. 10.4161/viru.27794

By:

Green, Jeffrey;
Rolfe, Matthew D;
Smith, Laura J

Publication type:

Article

Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0203711

By:

Zaka, Abha;
Grande, Genelou;
Coronejo, Thea;
Quibod, Ian Lorenzo;
Chen, Chun-Wei;
Chang, Su-Jein;
Szurek, Boris;
Arif, Muhammad;
Cruz, Casiana Vera;
Oliva, Ricardo

Publication type:

Article

Core non-coding RNAs of Piscirickettsia salmonis.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197206

By:

Segovia, Cristopher;
Arias-Carrasco, Raul;
Yañez, Alejandro J.;
Maracaja-Coutinho, Vinicius;
Santander, Javier

Publication type:

Article

An upstream sequence modulates phenazine production at the level of transcription and translation in the biological control strain Pseudomonas chlororaphis 30-84.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0193063

By:

Yu, Jun Myoung;
Wang, Dongping;
Ries, Tessa R.;
IIIPierson, Leland S.;
Pierson, Elizabeth A.

Publication type:

Article

Transcriptomic Analysis of Clostridium thermocellum in Cellulolytic Consortium after Artificial Reconstruction to Enhance Ethanol Production.

Published in:

BioResources, 2015, v. 10, n. 4, p. 7105, doi. 10.15376/biores.10.4.7105-7122

By:

Hongyu Li;
Yuanlong Pan;
Sandra Chang;
Ran Du;
Peipei Li;
Shizhong Li

Publication type:

Article

Ethanol-induced stress response of Staphylococcus aureus.

Published in:

Canadian Journal of Microbiology, 2017, v. 63, n. 9, p. 745, doi. 10.1139/cjm-2017-0221

By:

Pando, Jasmine M.;
Pfeltz, Richard F.;
Cuaron, Jesus A.;
Nagarajan, Vijayaraj;
Mishra, Mukti N.;
Torres, Nathanial J.;
Elasri, Mohamed O.;
Wilkinson, Brian J.;
Gustafson, John E.

Publication type:

Article

Transcriptional regulation of sdiA by cAMP-receptor protein, LeuO, and environmental signals in Salmonella enterica serovar Typhimurium.

Published in:

Canadian Journal of Microbiology, 2012, v. 58, n. 1, p. 10, doi. 10.1139/w11-101

By:

Turnbull, Amy L.;
Kim, Wook;
Surette, Michael G.

Publication type:

Article

wblA, a pleiotropic regulatory gene modulating morphogenesis and daptomycin production in Streptomyces roseosporus.

Published in:

Journal of Applied Microbiology, 2017, v. 123, n. 3, p. 669, doi. 10.1111/jam.13512

By:

Huang, X.;
Ma, T.;
Tian, J.;
Shen, L.;
Zuo, H.;
Hu, C.;
Liao, G.

Publication type:

Article

Catabolite responsive element deficiency of xyl operon resulting in carbon catabolite derepression in Lactobacillus fermentum 1001.

Published in:

Journal of Applied Microbiology, 2016, v. 120, n. 1, p. 126, doi. 10.1111/jam.12990

By:

Zhang, C.;
Guo, T.;
Xin, Y.;
Gao, X.;
Kong, J.

Publication type:

Article

Novel genetic tools to tackle c-di-GMP-dependent signalling in Pseudomonas aeruginosa.

Published in:

Journal of Applied Microbiology, 2016, v. 120, n. 1, p. 205, doi. 10.1111/jam.12984

By:

Pawar, S. Vishnu;
Messina, M.;
Rinaldo, S.;
Cutruzzolà, F.;
Kaever, V.;
Rampioni, G.;
Leoni, L.

Publication type:

Article

NaCl concentration in the medium modulates the secretion of active EmpA protease in Vibrio anguillarum at post-transcriptional level.

Published in:

Journal of Applied Microbiology, 2015, v. 119, n. 6, p. 1494, doi. 10.1111/jam.12957

By:

Crisafi, F.;
Denaro, R.;
Yakimov, M.;
Felice, M.R.;
Giuliano, L.;
Genovese, L.

Publication type:

Article

Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions.

Published in:

Microbial Cell Factories, 2016, v. 15, p. 1, doi. 10.1186/s12934-016-0455-1

By:

Ploss, Tina N.;
Reilman, Ewoud;
Monteferrante, Carmine G.;
Denham, Emma L.;
Piersma, Sjouke;
Lingner, Anja;
Vehmaanperä, Jari;
Lorenz, Patrick;
van Dijl, Jan Maarten

Publication type:

Article

Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation.

Published in:

Microbial Cell Factories, 2013, v. 12, n. 1, p. 1, doi. 10.1186/1475-2859-12-112

By:

de Veen, Hermien Van Bokhorst-van;
Bongers, Roger S.;
Wels, Michiel;
Bron, Peter A.;
Kleerebezem, Michiel

Publication type:

Article

A strategy of gene overexpression based on tandem repetitive promoters in Escherichia coli.

Published in:: Microbial Cell Factories, 2012, v. 11, n. 1, p. 19, doi. 10.1186/1475-2859-11-19
Publication type:: Article

The Transcriptional Activator LdtR from ‘<i>Candidatus</i> Liberibacter asiaticus’ Mediates Osmotic Stress Tolerance.

Published in:

PLoS Pathogens, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.ppat.1004101

By:

Pagliai, Fernando A.;
Gardner, Christopher L.;
Bojilova, Lora;
Sarnegrim, Amanda;
Tamayo, Cheila;
Potts, Anastasia H.;
Teplitski, Max;
Folimonova, Svetlana Y.;
Gonzalez, Claudio F.;
Lorca, Graciela L.

Publication type:

Article

Identifying and characterising PPE7 (Rv0354c) high activity binding peptides and their role in inhibiting cell invasion.

Published in:

Molecular & Cellular Biochemistry, 2017, v. 430, n. 1/2, p. 149, doi. 10.1007/s11010-017-2962-8

By:

Díaz, Diana;
Ocampo, Marisol;
Varela, Yahson;
Curtidor, Hernando;
Patarroyo, Manuel

Publication type:

Article

Transcriptional regulation of dimethyl sulfoxide respiration in a haloarchaeon, Haloferax volcanii.

Published in:

Extremophiles, 2016, v. 20, n. 1, p. 27, doi. 10.1007/s00792-015-0794-6

By:

Qi, Qiuzi;
Ito, Yoshiyasu;
Yoshimatsu, Katsuhiko;
Fujiwara, Taketomo

Publication type:

Article

Differential impact of ramRA mutations on both ramA transcription and decreased antimicrobial susceptibility in Salmonella Typhimurium.

Published in:

2016

By:

Fàbrega, Anna;
Ballesté-Delpierre, Clara;
Vila, Jordi

Publication type:

journal article

Early agr activation correlates with vancomycin treatment failure in multi-clonotype MRSA endovascular infections.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 5, p. 1443, doi. 10.1093/jac/dku547

By:

Abdelhady, Wessam;
Liang Chen;
Bayer, Arnold S.;
Seidl, Kati;
Yeaman, Michael R.;
Kreiswirth, Barry N.;
Xiong, Yan Q.

Publication type:

Article

A single mutation in rapP induces cheating to prevent cheating in Bacillus subtilis by minimizing public good production.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0136-1

By:

Lyons, Nicholas A.;
Kolter, Roberto

Publication type:

Article

Metabolic engineering of Corynebacterium glutamicum by synthetic small regulatory RNAs.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 2, p. 203, doi. 10.1007/s10295-018-02128-4

By:

Sun, Dehu;
Chen, Jiuzhou;
Wang, Yu;
Li, Mingyue;
Rao, Deming;
Guo, Yanmei;
Chen, Ning;
Zheng, Ping;
Sun, Jibin;
Ma, Yanhe

Publication type:

Article

MATLAB toolbox for modeling genetic circuits in cell-free systems†.

Published in:

Synthetic Biology (23977000), 2021, v. 6, n. 1, p. 1, doi. 10.1093/synbio/ysab007

By:

Singhal, Vipul;
Tuza, Zoltan A;
Sun, Zachary Z;
Murray, Richard M

Publication type:

Article

Nuclear envelope morphology constrains diffusion and promotes asymmetric protein segregation in closed mitosis.

Published in:

Journal of Cell Biology, 2012, v. 197, n. 7, p. 921, doi. 10.1083/jcb.201112117

By:

Boettcher, Barbara;
Marquez-Lago, Tatiana T.;
Bayer, Mathias;
Weiss, Eric L.;
Barral, Yves

Publication type:

Article

Early phase of effective treatment induces distinct transcriptional changes in Mycobacterium tuberculosis expelled by pulmonary tuberculosis patients.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-96902-7

By:

Shaikh, Ambreen;
Sriraman, Kalpana;
Vaswani, Smriti;
Oswal, Vikas;
Rao, Sudha;
Mistry, Nerges

Publication type:

Article

Recent advances in the characterization of Crl, the unconventional activator of the stress sigma factor σ<sup>S</sup>/RpoS.

Published in:

Biomolecular Concepts, 2016, v. 7, n. 3, p. 197, doi. 10.1515/bmc-2016-0006

By:

Cavaliere, Paola;
Norel, Françoise

Publication type:

Article

Comparative Bioinformatics Analysis of Transcription Factor Genes Indicates Conservation of Key Regulatory Domains among Babesia bovis, Babesia microti, and Theileria equi.

Published in:

PLoS Neglected Tropical Diseases, 2016, v. 10, n. 11, p. 1, doi. 10.1371/journal.pntd.0004983

By:

Alzan, Heba F.;
Knowles, Donald P.;
Suarez, Carlos E.

Publication type:

Article

Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0134149

By:

Eikmeyer, Felix Gregor;
Heinl, Stefan;
Marx, Hans;
Pühler, Alfred;
Grabherr, Reingard;
Schlüter, Andreas

Publication type:

Article

Correction: Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0134759

By:

Zhang, Yuanhao;
Rowehl, Leahana;
Krumsiek, Julia M.;
Orner, Erika P.;
Shaikh, Nurmohammad;
Tarr, Phillip I.;
Sodergren, Erica;
Weinstock, George M.;
Boedeker, Edgar C.;
Xiong, Xuejian;
Parkinson, John;
Frank, Daniel N.;
Li, Ellen;
Gathungu, Grace

Publication type:

Article

A Genomic, Transcriptomic and Proteomic Look at the GE2270 Producer Planobispora rosea, an Uncommon Actinomycete.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133705

By:

Tocchetti, Arianna;
Bordoni, Roberta;
Gallo, Giuseppe;
Petiti, Luca;
Corti, Giorgio;
Alt, Silke;
Cruz, Joao C. S.;
Salzano, Anna Maria;
Scaloni, Andrea;
Puglia, Anna Maria;
De Bellis, Gianluca;
Peano, Clelia;
Donadio, Stefano;
Sosio, Margherita

Publication type:

Article

The Role of α-CTD in the Genome-Wide Transcriptional Regulation of the Bacillus subtilis Cells.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0131588

By:

Murayama, Satohiko;
Ishikawa, Shu;
Chumsakul, Onuma;
Ogasawara, Naotake;
Oshima, Taku

Publication type:

Article

Transcriptional and Post-Transcriptional Modulation of SPI1 and SPI2 Expression by ppGpp, RpoS and DksA in Salmonella enterica sv Typhimurium.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0127523

By:

Rice, Christopher J.;
Ramachandran, Vinoy K.;
Shearer, Neil;
Thompson, Arthur

Publication type:

Article

Shigella Infection Interferes with SUMOylation and Increases PML-NB Number.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122585

By:

Sidik, Saima M.;
Salsman, Jayme;
Dellaire, Graham;
Rohde, John R.

Publication type:

Article

Transcriptional Profile of Mycobacterium tuberculosis Replicating in Type II Alveolar Epithelial Cells.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123745

By:

Ryndak, Michelle B.;
Singh, Krishna K.;
Peng, Zhengyu;
Laal, Suman

Publication type:

Article

CD14 and Complement Crosstalk and Largely Mediate the Transcriptional Response to Escherichia coli in Human Whole Blood as Revealed by DNA Microarray.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0117261

By:

Lau, Corinna;
Nygård, Ståle;
Fure, Hilde;
Olstad, Ole Kristoffer;
Holden, Marit;
Lappegård, Knut Tore;
Brekke, Ole-Lars;
Espevik, Terje;
Hovig, Eivind;
Mollnes, Tom Eirik

Publication type:

Article

Comparative Transcriptome Analysis Reveals That Lactose Acts as an Inducer and Provides Proper Carbon Sources for Enhancing Exopolysaccharide Yield in the Deep-Sea Bacterium Zunongwangia profunda SM-A87.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0115998

By:

Qin, Qi-Long;
Li, Yi;
Sun, Mei-Ling;
Rong, Jin-Cheng;
Liu, Sheng-Bo;
Chen, Xiu-Lan;
Su, Hai-Nan;
Zhou, Bai-Cheng;
Xie, Bin-Bin;
Zhang, Yu-Zhong;
Zhang, Xi-Ying

Publication type:

Article

Transcriptome Analysis of Enterococcus faecalis during Mammalian Infection Shows Cells Undergo Adaptation and Exist in a Stringent Response State.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0115839

By:

Frank, Kristi L.;
Colomer-Winter, Cristina;
Grindle, Suzanne M.;
Lemos, José A.;
Schlievert, Patrick M.;
Dunny, Gary M.

Publication type:

Article

Transcriptomics Reveal Several Gene Expression Patterns in the Piezophile Desulfovibrio hydrothermalis in Response to Hydrostatic Pressure.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106831

By:

Amrani, Amira;
Bergon, Aurélie;
Holota, Hélène;
Tamburini, Christian;
Garel, Marc;
Ollivier, Bernard;
Imbert, Jean;
Dolla, Alain;
Pradel, Nathalie

Publication type:

Article