Works matching DE "STRUCTURAL genomics"

Results: 109

Identification of the HcgB Enzyme in [Fe]-Hydrogenase-Cofactor Biosynthesis.

Published in:

Angewandte Chemie, 2013, v. 125, n. 48, p. 12787, doi. 10.1002/ange.201306745

By:

Fujishiro, Takashi;
Tamura, Haruka;
Schick, Michael;
Kahnt, Jörg;
Xie, Xiulan;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Consideration of mobile DNA: new forms of artificial genetic regulatory networks.

Published in:

Natural Computing, 2013, v. 12, n. 4, p. 443, doi. 10.1007/s11047-013-9369-6

By:

Bull, Larry

Publication type:

Article

SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3348, doi. 10.1093/bioinformatics/btx455

By:

Yuchao Xia;
Yun Liu;
Minghua Deng;
Ruibin Xi

Publication type:

Article

Breakpoint Surveyor: a pipeline for structural variant visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3121, doi. 10.1093/bioinformatics/btx362

By:

Wyczalkowski, Matthew A.;
Wylie, Kristine M.;
Song Cao;
McLellan, Michael D.;
Flynn, Jennifer;
Mo Huang;
Kai Ye;
Xian Fan;
Ken Chen;
Wendl, Michael C.;
Li Ding

Publication type:

Article

Correlated mutations select misfolded from properly folded proteins.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1497, doi. 10.1093/bioinformatics/btx013

By:

Wozniak, P. P.;
Vriend, G.;
Kotulska, M.

Publication type:

Article

WALT: fast and accurate read mapping for bisulfite sequencing.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3507, doi. 10.1093/bioinformatics/btw490

By:

Haifeng Chen;
Smith, Andrew D.;
Ting Chen

Publication type:

Article

FREGAT: an R package for region-based association analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2392, doi. 10.1093/bioinformatics/btw160

By:

Belonogova, Nadezhda M.;
Svishcheva, Gulnara R.;
Axenovich, Tatiana I.

Publication type:

Article

Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 792, doi. 10.1093/bioinformatics/btv637

By:

Kaiser, Florian;
Eisold, Alexander;
Bittrich, Sebastian;
Labudde, Dirk

Publication type:

Article

The discordant method: a novel approach for differential correlation.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 690, doi. 10.1093/bioinformatics/btv633

By:

Siska, Charlotte;
Bowler, Russell;
Kechris, Katerina

Publication type:

Article

PHYLUCE is a software package for the analysis of conserved genomic loci.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 786, doi. 10.1093/bioinformatics/btv646

By:

Faircloth, Brant C.

Publication type:

Article

LIBRA: LIgand Binding site Recognition Application.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 4020, doi. 10.1093/bioinformatics/btv489

By:

Hung, Le Viet;
Caprari, Silvia;
Bizai, Massimiliano;
Toti, Daniele;
Polticelli, Fabio

Publication type:

Article

Integrated structure- and ligand-based in silico approach to predict inhibition of cytochrome P450 2D6.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 3930, doi. 10.1093/bioinformatics/btv486

By:

Martiny, Virginie Y.;
Carbonell, Pablo;
Chevillard, Florent;
Moroy, Gautier;
Nicot, Arnaud B.;
Vayer, Philippe;
Villoutreix, Bruno O.;
Miteva, Maria A.

Publication type:

Article

Learning directed acyclic graphical structures with genetical genomics data.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 3953, doi. 10.1093/bioinformatics/btv513

By:

Bin Gao;
Yuehua Cui

Publication type:

Article

HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3850, doi. 10.1093/bioinformatics/btv441

By:

Jinchao Yu;
Picord, Geraldine;
Tuffery, Pierre;
Guerois, Raphael

Publication type:

Article

Detecting differential protein expression in large-scale population proteomics.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2741, doi. 10.1093/bioinformatics/btu341

By:

Ryu, So Young;
Qian, Wei-Jun;
Camp, David G.;
Smith, Richard D.;
Tompkins, Ronald G.;
Davis, Ronald W.;
Xiao, Wenzhong

Publication type:

Article

Network-guided regression for detecting associations between DNA methylation and gene expression.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2693, doi. 10.1093/bioinformatics/btu361

By:

Wang, Zi;
Curry, Edward;
Montana, Giovanni

Publication type:

Article

Cloud4Psi: cloud computing for 3D protein structure similarity searching.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2822, doi. 10.1093/bioinformatics/btu389

By:

Mrozek, Dariusz;
Małysiak-Mrozek, Bożena;
Kłapciński, Artur

Publication type:

Article

Challenges in RNA virus bioinformatics.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1793, doi. 10.1093/bioinformatics/btu105

By:

Marz, Manja;
Beerenwinkel, Niko;
Drosten, Christian;
Fricke, Markus;
Frishman, Dmitrij;
Hofacker, Ivo L.;
Hoffmann, Dieter;
Middendorf, Martin;
Rattei, Thomas;
Stadler, Peter F.;
Töpfer, Armin

Publication type:

Article

ASSIST: a fast versatile local structural comparison tool.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1022, doi. 10.1093/bioinformatics/btt664

By:

Caprari, Silvia;
Toti, Daniele;
Viet Hung, Le;
Di Stefano, Maurizio;
Polticelli, Fabio

Publication type:

Article

PAVIS: a tool for Peak Annotation and Visualization.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3097, doi. 10.1093/bioinformatics/btt520

By:

Huang, Weichun;
Loganantharaj, Rasiah;
Schroeder, Bryce;
Fargo, David;
Li, Leping

Publication type:

Article

Pipit: visualizing functional impacts of structural variations.

Published in:

Bioinformatics, 2013, v. 29, n. 17, p. 2206, doi. 10.1093/bioinformatics/btt367

By:

Sakai, Ryo;
Moisse, Matthieu;
Reumers, Joke;
Aerts, Jan

Publication type:

Article

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 5, p. 285, doi. 10.1038/nrg3883

By:

Koenig, Daniel;
Weigel, Detlef

Publication type:

Article

Analysis of Gene Expression in an Inbred Line of Soft-Shell Clams (Mya arenaria) Displaying Growth Heterosis: Regulation of Structural Genes and the NOD2 Pathway.

Published in:

International Journal of Genomics, 2016, p. 1, doi. 10.1155/2016/6720947

By:

Wilson, John J.;
Grendler, Janelle;
Dunlap-Smith, Azaline;
Beal, Brian F.;
Page, Shallee T.

Publication type:

Article

FaMYB44.2, a transcriptional repressor, negatively regulates sucrose accumulation in strawberry receptacles through interplay with FaMYB10.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 20, p. 4805, doi. 10.1093/jxb/ery249

By:

Wei, Lingzhi;
Mao, Wenwen;
Jia, Meiru;
Xing, Sinian;
Ali, Usman;
Zhao, Yaoyao;
Chen, Yating;
Cao, Minglin;
Dai, Zhengrong;
Zhang, Kai

Publication type:

Article

Crystal Structure Analysis of a Recombinant Predicted Acetamidase/Formamidase from the Thermophile Thermoanaerobacter tengcongensis.

Published in:

Protein Journal, 2012, v. 31, n. 2, p. 166, doi. 10.1007/s10930-011-9387-0

By:

Qian, Minxie;
Huang, Qichen;
Wu, Guangteng;
Lai, Luhua;
Tang, Youqi;
Pei, Jianfeng;
Kusunoki, Masami

Publication type:

Article

Development & evaluation of biotinylated DNA probe for clinical diagnosis of chikungunya infection in patients' acute phase serum & CSF samples.

Published in:

Indian Journal of Medical Research, 2013, v. 138, n. 1, p. 117

By:

Kumar, Jyoti S.;
Parida, Manmohan;
Lakshmana Rao, P. V.

Publication type:

Article

Lessons from ten years of crystallization experiments at the SGC.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2016, v. 72, n. 2, p. 224, doi. 10.1107/S2059798315024687

By:

Ng, Jia Tsing;
Dekker, Carien;
Reardon, Paul;
von Delft, Frank

Publication type:

Article

ViVar: A Comprehensive Platform for the Analysis and Visualization of Structural Genomic Variation.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0113800

By:

Sante, Tom;
Vergult, Sarah;
Volders, Pieter-Jan;
Kloosterman, Wigard P.;
Trooskens, Geert;
De Preter, Katleen;
Dheedene, Annelies;
Speleman, Frank;
De Meyer, Tim;
Menten, Björn

Publication type:

Article

Statistical Analysis of Crystallization Database Links Protein Physico-Chemical Features with Crystallization Mechanisms.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0101123

By:

Fusco, Diana;
Barnum, Timothy J.;
Bruno, Andrew E.;
Luft, Joseph R.;
Snell, Edward H.;
Mukherjee, Sayan;
Charbonneau, Patrick

Publication type:

Article

Encoded Expansion: An Efficient Algorithm to Discover Identical String Motifs.

Published in:

PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0095148

By:

Azmi, Aqil M.;
Al-Ssulami, Abdulrakeeb

Publication type:

Article

PASTEC: An Automatic Transposable Element Classification Tool.

Published in:

PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0091929

By:

Hoede, Claire;
Arnoux, Sandie;
Moisset, Mark;
Chaumier, Timothée;
Inizan, Olivier;
Jamilloux, Véronique;
Quesneville, Hadi

Publication type:

Article

Wat1/pop3, a Conserved WD Repeat Containing Protein Acts Synergistically with Checkpoint Kinase Chk1 to Maintain Genome Ploidy in Fission Yeast S. pombe.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089587

By:

Verma, Sumit Kumar;
Ranjan, Rajeev;
Kumar, Vikash;
Siddiqi, Mohammad Imran;
Ahmed, Shakil

Publication type:

Article

The Bacillus subtilis TRAP Protein Can Induce Transcription Termination in the Leader Region of the Tryptophan Biosynthetic (trp) Operon Independent of the trp Attenuator RNA.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088097

By:

McAdams, Natalie M.;
Gollnick, Paul

Publication type:

Article

Clustering HLA Class I Superfamilies Using Structural Interaction Patterns.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0086655

By:

Harjanto, Sumitro;
Ng, Lisa F. P.;
Tong, Joo Chuan

Publication type:

Article

Alternative Splice Variants in TIM Barrel Proteins from Human Genome Correlate with the Structural and Evolutionary Modularity of this Versatile Protein Fold.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0070582

By:

Ochoa-Leyva, Adrián;
Montero-Morán, Gabriela;
Saab-Rincón, Gloria;
Brieba, Luis G.;
Soberón, Xavier

Publication type:

Article

Multicolour Fluorescence-Detection Size-Exclusion Chromatography for Structural Genomics of Membrane Multiprotein Complexes.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0067112

By:

Parcej, David;
Guntrum, Renate;
Schmidt, Sabine;
Hinz, Andreas;
Tampé, Robert

Publication type:

Article

PeSV-Fisher: Identification of Somatic and Non-Somatic Structural Variants Using Next Generation Sequencing Data

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063377

By:

Escaramís, Geòrgia;
Tornador, Cristian;
Bassaganyas, Laia;
Rabionet, Raquel;
Tubio, Jose M. C.;
Martínez-Fundichely, Alexander;
Cáceres, Mario;
Gut, Marta;
Ossowski, Stephan;
Estivill, Xavier

Publication type:

Article

The PARIGA Server for Real Time Filtering and Analysis of Reciprocal BLAST Results

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062224

By:

Orsini, Massimiliano;
Carcangiu, Simone;
Cuccuru, Gianmauro;
Uva, Paolo;
Tramontano, Anna

Publication type:

Article

Ancestral Genome Inference Using a Genetic Algorithm Approach

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062156

By:

Gao, Nan;
Yang, Ning;
Tang, Jijun

Publication type:

Article

CNVrd, a Read-Depth Algorithm for Assigning Copy-Number at the FCGR Locus: Population-Specific Tagging of Copy Number Variation at FCGR3B.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0063219

By:

Nguyen, Hoang tan;
Merriman, Tony R.;
Black, Michael A.

Publication type:

Article

Klebsiella Phage vB_KleM-RaK2 — A Giant Singleton Virus of the Family Myoviridae.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0060717

By:

Šimoliūnas, Eugenijus;
Kaliniene, Laura;
Truncaitė, Lidija;
Zajančkauskaitė, Aurelija;
Staniulis, Juozas;
Kaupinis, Algirdas;
Ger, Marija;
Valius, Mindaugas;
Meškys, Rolandas

Publication type:

Article

Analysis of Flavonoids and the Flavonoid Structural Genes in Brown Fiber of Upland Cotton.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058820

By:

Feng, Hongjie;
Tian, Xinhui;
Liu, Yongchang;
Li, Yanjun;
Zhang, Xinyu;
Jones, Brian Joseph;
Sun, Yuqiang;
Sun, Jie

Publication type:

Article

Rare Genomic Structural Variants in Complex Disease: Lessons from the Replication of Associations with Obesity.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058048

By:

Walters, Robin G.;
Coin, Lachlan J. M.;
Ruokonen, Aimo;
de Smith, Adam J.;
El-Sayed Moustafa, Julia S.;
Jacquemont, Sebastien;
Elliott, Paul;
Esko, Tõnu;
Hartikainen, Anna-Liisa;
Laitinen, Jaana;
Männik, Katrin;
Martinet, Danielle;
Meyre, David;
Nauck, Matthias;
Schurmann, Claudia;
Sladek, Rob;
Thorleifsson, Gudmar;
Thorsteinsdóttir, Unnur;
Valsesia, Armand;
Waeber, Gerard

Publication type:

Article

High-Throughput Massively Parallel Sequencing for Fetal Aneuploidy Detection from Maternal Plasma.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0057381

By:

Jensen, Taylor J.;
Zwiefelhofer, Tricia;
Tim, Roger C.;
Džakula, Željko;
Kim, Sung K.;
Mazloom, Amin R.;
Zhu, Zhanyang;
Tynan, John;
Lu, Tim;
McLennan, Graham;
Palomaki, Glenn E.;
Canick, Jacob A.;
Oeth, Paul;
Deciu, Cosmin;
van den Boom, Dirk;
Ehrich, Mathias

Publication type:

Article

Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056535

By:

Das, Pranab J.;
McCarthy, Fiona;
Vishnoi, Monika;
Paria, Nandina;
Gresham, Cathy;
Li, Gang;
Kachroo, Priyanka;
Sudderth, A. Kendrick;
Teague, Sheila;
Love, Charles C.;
Varner, Dickson D.;
Chowdhary, Bhanu P.;
Raudsepp, Terje

Publication type:

Article

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056138

By:

Levy-Assaraf, Maly;
Voronov-Goldman, Milana;
Rozman Grinberg, Inna;
Weiserman, Gloria;
Shimon, Linda J. W.;
Jindou, Sadanari;
Borovok, Ilya;
White, Bryan A.;
Bayer, Edward A.;
Lamed, Raphael;
Frolow, Felix

Publication type:

Article

Benchmarking Human Protein Complexes to Investigate Drug-Related Systems and Evaluate Predicted Protein Complexes.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0053197

By:

Wu, Min;
Yu, Qi;
Li, Xiaoli;
Zheng, Jie;
Huang, Jing-Fei;
Kwoh, Chee-Keong

Publication type:

Article

Genome-wide marker-trait association analysis in a core set of Dolichos bean germplasm.

Published in:

Plant Genetic Resources: Characterisation & Utilisation, 2019, v. 17, n. 1, p. 1, doi. 10.1017/S1479262118000163

By:

Vaijayanthi, P. V.;
Ramesh, S.;
Gowda, M. B.;
Rao, A. M.;
Keerthi, C. M.

Publication type:

Article

Tailored Hydrogel Membranes for Efficient Protein Crystallization.

Published in:

Advanced Functional Materials, 2014, v. 24, n. 11, p. 1582, doi. 10.1002/adfm.201302240

By:

Profio, Gianluca Di;
Polino, Mariella;
Nicoletta, Fiore P.;
Belviso, Benny D.;
Caliandro, Rocco;
Fontananova, Enrica;
Filpo, Giovanni De;
Curcio, Efrem;
Drioli, Enrico

Publication type:

Article

Common Stress Transcriptome Analysis Reveals Functional and Genomic Architecture Differences Between Early and Delayed Response Genes.

Published in:

Plant & Cell Physiology, 2017, v. 58, n. 3, p. 546, doi. 10.1093/pcp/pcx002

By:

Chung-Wen Lin;
Li-Yao Huang;
Chao-Li Huang;
Yong-Chuan Wang;
Pei-Hsuan Lai;
Hao-Ven Wang;
Wen-Chi Chang;
Tzen-Yuh Chiang;
Hao-Jen Huang

Publication type:

Article