Works matching DE "COMPUTERS in genetics"

Results: 31

FREGAT: an R package for region-based association analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2392, doi. 10.1093/bioinformatics/btw160

By:

Belonogova, Nadezhda M.;
Svishcheva, Gulnara R.;
Axenovich, Tatiana I.

Publication type:

Article

pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2378, doi. 10.1093/bioinformatics/btw167

By:

Vanderkam, Dan;
Aksoy, B. Arman;
Hodes, Isaac;
Perrone, Jaclyn;
Hammerbacher, Jeff

Publication type:

Article

Canvas: versatile and scalable detection of copy number variants.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2375, doi. 10.1093/bioinformatics/btw163

By:

Roller, Eric;
Ivakhno, Sergii;
Lee, Steve;
Royce, Thomas;
Tanner, Stephen

Publication type:

Article

HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2372, doi. 10.1093/bioinformatics/btw161

By:

Gu, Zuguang;
Eils, Roland;
Schlesner, Matthias

Publication type:

Article

BLESS 2: accurate, memory-efficient and fast error correction method.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2369, doi. 10.1093/bioinformatics/btw146

By:

Yun Heo;
Ramachandran, Anand;
Wen-Mei Hwu;
Jian Ma;
Deming Chen

Publication type:

Article

Nsite, NsiteH and NsiteM computer tools for studying transcription regulatory elements.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3544, doi. 10.1093/bioinformatics/btv404

By:

Shahmuradov, Ilham A.;
Solovyev, Victor V.

Publication type:

Article

Graphical algorithm for integration of genetic and biological data: proof of principle using psoriasis as a model.

Published in:

Bioinformatics, 2015, v. 31, n. 7, p. 1243, doi. 10.1093/bioinformatics/btu799

By:

Tsoi, Lam C.;
Elder, James T.;
Abecasis, Goncalo R.

Publication type:

Article

Identifying cancer-related microRNAs based on gene expression data.

Published in:

Bioinformatics, 2015, v. 31, n. 7, p. 1226, doi. 10.1093/bioinformatics/btu811

By:

Xing-Ming Zhao;
Ke-Qin Liu;
Guanghui Zhu;
Feng He;
Duval, Béatrice;
Richer, Jean-Michel;
De-Shuang Huang;
Chang-Jun Jiang;
Jin-Kao Hao;
Luonan Chen

Publication type:

Article

Faster sequence homology searches by clustering subsequences.

Published in:

Bioinformatics, 2015, v. 31, n. 7, p. 1183, doi. 10.1093/bioinformatics/btu780

By:

Shuji Suzuki;
Masanori Kakuta;
Takashi Ishida;
Yutaka Akiyama

Publication type:

Article

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1003, doi. 10.1093/bioinformatics/btt637

By:

Raney, Brian J.;
Dreszer, Timothy R.;
Barber, Galt P.;
Clawson, Hiram;
Fujita, Pauline A.;
Wang, Ting;
Nguyen, Ngan;
Paten, Benedict;
Zweig, Ann S.;
Karolchik, Donna;
Kent, W. James

Publication type:

Article

MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1015, doi. 10.1093/bioinformatics/btt755

By:

Niu, Beifang;
Ye, Kai;
Zhang, Qunyuan;
Lu, Charles;
Xie, Mingchao;
McLellan, Michael D.;
Wendl, Michael C.;
Ding, Li

Publication type:

Article

CrossMap: a versatile tool for coordinate conversion between genome assemblies.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1006, doi. 10.1093/bioinformatics/btt730

By:

Zhao, Hao;
Sun, Zhifu;
Wang, Jing;
Huang, Haojie;
Kocher, Jean-Pierre;
Wang, Liguo

Publication type:

Article

SplicePlot: a utility for visualizing splicing quantitative trait loci.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1025

By:

Wu, Eric;
Nance, Tracy;
Montgomery, Stephen B.

Publication type:

Article

SurpriseMe: an integrated tool for network community structure characterization using Surprise maximization.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1041, doi. 10.1093/bioinformatics/btt741

By:

Aldecoa, Rodrigo;
Marín, Ignacio

Publication type:

Article

The mouse pathology ontology, MPATH; structure and applications.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-18

By:

Schofield, Paul N.;
Sundberg, John P.;
Sundberg, Beth A.;
McKerlie, Colin;
Gkoutos, Georgios V.

Publication type:

Article

IDOMAL: the malaria ontology revisited.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-16

By:

Topalisx, Pantelis;
Mitraka, Elvira;
Dritsou, Vicky;
Dialynas, Emmanuel;
Louis, Christos

Publication type:

Article

The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-13

By:

Carissa A Park;
Bello, Susan M.;
Smith, Cynthia L.;
Zhi-Liang Hu;
Munzenmaier, Diane H.;
Nigam, Rajni;
Smith, Jennifer R.;
Shimoyama, Mary;
Eppig, Janan T.;
Reecy, James M.

Publication type:

Article

Pedimap: Software for the Visualization of Genetic and Phenotypic Data in Pedigrees.

Published in:

Journal of Heredity, 2012, v. 103, n. 6, p. 903, doi. 10.1093/jhered/ess060

By:

Voorrips, Roeland E.;
Bink, Marco C. A. M.;
van de Weg, W. Eric

Publication type:

Article

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.

Published in:

GigaScience, 2015, v. 4, p. 1, doi. 10.1186/s13742-015-0097-y

By:

Kaplinski, Lauris;
Lepamets, Maarja;
Remm, Maido

Publication type:

Article

A hidden Markov tree model for testing multiple hypotheses corresponding to Gene Ontology gene sets.

Published in:

BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2106-5

By:

Liang, Kun;
Du, Chuanlong;
You, Hankun;
Nettleton, Dan

Publication type:

Article

Protecting the Genetic Data of Unborn Children: A Critical Analysis.

Published in:

European Data Protection Law Review (EDPL), 2018, v. 4, n. 1, p. 53, doi. 10.21552/edpl/2018/1/8

By:

Pormeister, Kärt;
Drożdżowski, Łukasz

Publication type:

Article

An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0101754

By:

Azam, Sarwar;
Rathore, Abhishek;
Shah, Trushar M.;
Telluri, Mohan;
Amindala, BhanuPrakash;
Ruperao, Pradeep;
Katta, Mohan A. V. S. K.;
Varshney, Rajeev K.

Publication type:

Article

SPPS: A Sequence-Based Method for Predicting Probability of Protein-Protein Interaction Partners.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030938

By:

Xinyi Liu;
Bin Liu;
Zhimin Huang;
Ting Shi;
Yingyi Chen;
Jian Zhang

Publication type:

Article

Compressive genomics.

Published in:

Nature Biotechnology, 2012, v. 30, n. 7, p. 627, doi. 10.1038/nbt.2241

By:

Loh, Po-Ru;
Baym, Michael;
Berger, Bonnie

Publication type:

Article

Ensemble classifier based on context specific miRNA regulation modules: a new method for cancer outcome prediction.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-14-S12-S6

By:

Xionghui Zhou;
Juan Liu;
Xinghuo Ye;
Wei Wang;
Jianghui Xiong

Publication type:

Article

Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-14-S12-S4

By:

Wei Xiong;
Hui Liu;
Jihong Guan;
Shuigeng Zhou

Publication type:

Article

An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-14-S12-S3

By:

Chun-Pei Cheng;
Yu-Cheng Liu;
Yi-Lin Tsai;
Vincent S. Tseng

Publication type:

Article

Classification of gene expression autism data based on adaptive penalized logistic regression.

Published in:

Electronic Journal of Applied Statistical Analysis, 2017, v. 10, n. 2, p. 561, doi. 10.1285/i20705948v10n2p561

By:

Algamal, Zakariya Yahya

Publication type:

Article

Disbiome database: linking the microbiome to disease.

Published in:

BMC Microbiology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12866-018-1197-5

By:

Janssens, Yorick;
Nielandt, Joachim;
Bronselaer, Antoon;
Debunne, Nathan;
Verbeke, Frederick;
Wynendaele, Evelien;
Van Immerseel, Filip;
Vandewynckel, Yves-Paul;
De Tré, Guy;
De Spiegeleer, Bart

Publication type:

Article

Parametric modeling of whole-genome sequencing data for CNV identification.

Published in:

Biostatistics, 2014, v. 15, n. 3, p. 427, doi. 10.1093/biostatistics/kxt060

By:

Vardhanabhuti, Saran;
Jeng, X. Jessie;
Wu, Yinghua;
Li, Hongzhe

Publication type:

Article

popRange: a highly flexible spatially and temporally explicit Wright-Fisher simulator.

Published in:

Source Code for Biology & Medicine, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13029-015-0036-4

By:

McManus, Kimberly F.

Publication type:

Article