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An Efficient, Nonphylogenetic Method for Detecting Genes Sharing Evolutionary Signals in Phylogenomic Data Sets.
Published in:
Genome Biology & Evolution, 2021, v. 13, n. 9, p. 1, doi. 10.1093/gbe/evab187
By:
- Rangel, Luiz Thibério;
- Soucy, Shannon M;
- Setubal, João C;
- Gogarten, Johann Peter;
- Fournier, Gregory P
Publication type:
Article
Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-551
By:
- Jalan, Neha;
- Kumar, Dibyendu;
- Andrade, Maxuel O.;
- Yu, Fahong;
- Jones, Jeffrey B.;
- Graham, James H.;
- White, Frank F.;
- Setubal, João C.;
- Wang, Nian
Publication type:
Article
Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.
Published in:
BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-146
By:
- Potnis, Neha;
- Krasileva, Ksenia;
- Chow, Virginia;
- Almeida, Nalvo F;
- Patil, Prabhu B;
- Ryan, Robert P;
- Sharlach, Molly;
- Behlau, Franklin;
- Dow, J Max;
- Momol, MT;
- White, Frank F;
- Preston, James F;
- Vinatzer, Boris A;
- Koebnik, Ralf;
- Setubal, João C;
- Norman, David J;
- Staskawicz, Brian J;
- Jones, Jeffrey B
Publication type:
Article
Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2164-12-146
By:
- Potnis, Neha;
- Krasileva, Ksenia;
- Chow, Virginia;
- Almeida, Nalvo F.;
- Patil, Prabhu B.;
- Ryan, Robert P.;
- Sharlach, Molly;
- Behlau, Franklin;
- Max Dow, J.;
- Momol, MT.;
- White, Frank F.;
- Preston, James F.;
- Vinatzer, Boris A.;
- Koebnik, Ralf;
- Setubal, João C.;
- Norman, David J.;
- Staskawicz, Brian J.;
- Jones, Jeffrey B.
Publication type:
Article
MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins.
Published in:
Frontiers in Genetics, 2018, p. N.PAG, doi. 10.3389/fgene.2018.00304
By:
- Amgarten, Deyvid;
- Braga, Lucas P. P.;
- da Silva, Aline M.;
- Setubal, João C.
Publication type:
Article
Chromatin Landscape Distinguishes the Genomic Loci of Hundreds of Androgen-Receptor-Associated LincRNAs From the Loci of Non-associated LincRNAs.
Published in:
Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00132
By:
- daSilva, Lucas F.;
- Beckedorff, Felipe C.;
- Ayupe, Ana C.;
- Amaral, Murilo S.;
- Mesel, Vinícius;
- Videira, Alexandre;
- Reis, Eduardo M.;
- Setubal, João C.;
- Verjovski-Almeida, Sergio
Publication type:
Article
Inhibition of histone methyltransferase EZH2 in Schistosoma mansoni in vitro by GSK343 reduces egg laying and decreases the expression of genes implicated in DNA replication and noncoding RNA metabolism.
Published in:
PLoS Neglected Tropical Diseases, 2018, v. 12, n. 10, p. 1, doi. 10.1371/journal.pntd.0006873
By:
- Pereira, Adriana S. A.;
- Amaral, Murilo S.;
- Vasconcelos, Elton J. R.;
- Pires, David S.;
- Asif, Huma;
- daSilva, Lucas F.;
- Morales-Vicente, David A.;
- Carneiro, Vitor C.;
- Angeli, Claudia B.;
- Palmisano, Giuseppe;
- Fantappie, Marcelo R.;
- Pierce, Raymond J.;
- Setubal, João C.;
- Verjovski-Almeida, Sergio
Publication type:
Article
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6007-4
By:
- Patané, José S. L.;
- Martins, Joaquim;
- Rangel, Luiz Thiberio;
- Belasque, José;
- Digiampietri, Luciano A.;
- Facincani, Agda Paula;
- Ferreira, Rafael Marini;
- Jaciani, Fabrício José;
- Zhang, Yunzeng;
- Varani, Alessandro M.;
- Almeida, Nalvo F.;
- Wang, Nian;
- Ferro, Jesus A.;
- Moreira, Leandro M.;
- Setubal, João C.
Publication type:
Article
Genomic Characterization of Salmonella Typhimurium Isolated from Guinea Pigs with Salmonellosis in Lima, Peru.
Published in:
Microorganisms, 2022, v. 10, n. 9, p. 1726, doi. 10.3390/microorganisms10091726
By:
- Carhuaricra Huaman, Dennis E.;
- Luna Espinoza, Luis R.;
- Rodríguez Cueva, Carmen L.;
- Duran Gonzales, Carla G.;
- Rosadio Alcántara, Raúl H.;
- Setubal, João C.;
- Maturrano Hernández, Lenin
Publication type:
Article
Comparative Genomics of Xylella fastidiosa Explores Candidate Host-Specificity Determinants and Expands the Known Repertoire of Mobile Genetic Elements and Immunity Systems.
Published in:
Microorganisms, 2022, v. 10, n. 5, p. 914, doi. 10.3390/microorganisms10050914
By:
- Uceda-Campos, Guillermo;
- Feitosa-Junior, Oseias R.;
- Santiago, Caio R. N.;
- Pierry, Paulo M.;
- Zaini, Paulo A.;
- de Santana, Wesley O.;
- Martins-Junior, Joaquim;
- Barbosa, Deibs;
- Digiampietri, Luciano A.;
- Setubal, João C.;
- da Silva, Aline M.
Publication type:
Article
A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01081-2
By:
- Casaro, Mateus B.;
- Thomas, Andrew M.;
- Mendes, Eduardo;
- Fukumori, Claudio;
- Ribeiro, Willian R.;
- Oliveira, Fernando A.;
- Crisma, Amanda R.;
- Murata, Gilson M.;
- Bizzarro, Bruna;
- Sá-Nunes, Anderson;
- Setubal, Joao C.;
- Mayer, Marcia P. A.;
- Martins, Flaviano S.;
- Vieira, Angélica T.;
- Antiorio, Ana T. F. B.;
- Tavares-de-Lima, Wothan;
- Camara, Niels O. S.;
- Curi, Rui;
- Dias-Neto, Emmanuel;
- Ferreira, Caroline M.
Publication type:
Article
Correction to: A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.
Published in:
2021
By:
- Casaro, Mateus B.;
- Thomas, Andrew M.;
- Mendes, Eduardo;
- Fukumori, Claudio;
- Ribeiro, Willian R.;
- Oliveira, Fernando A.;
- Crisma, Amanda R.;
- Murata, Gilson M.;
- Bizzarro, Bruna;
- Sá-Nunes, Anderson;
- Setubal, Joao C.;
- Mayer, Marcia P. A.;
- Martins, Flaviano S.;
- Vieira, Angélica T.;
- Antiorio, Ana T. F. B.;
- Tavares-de-Lima, Wothan;
- Camara, Niels O. S.;
- Curi, Rui;
- Dias-Neto, Emmanuel;
- Ferreira, Caroline M.
Publication type:
Correction Notice
A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01081-2
By:
- Casaro, Mateus B.;
- Thomas, Andrew M.;
- Mendes, Eduardo;
- Fukumori, Claudio;
- Ribeiro, Willian R.;
- Oliveira, Fernando A.;
- Crisma, Amanda R.;
- Murata, Gilson M.;
- Bizzarro, Bruna;
- Sá-Nunes, Anderson;
- Setubal, Joao C.;
- Mayer, Marcia P. A.;
- Martins, Flaviano S.;
- Vieira, Angélica T.;
- Antiorio, Ana T. F. B.;
- Tavares-de-Lima, Wothan;
- Camara, Niels O. S.;
- Curi, Rui;
- Dias-Neto, Emmanuel;
- Ferreira, Caroline M.
Publication type:
Article
Novel virocell metabolic potential revealed in agricultural soils by virus‐enriched soil metagenome analysis.
Published in:
Environmental Microbiology Reports, 2021, v. 13, n. 3, p. 348, doi. 10.1111/1758-2229.12939
By:
- Braga, Lucas P. P.;
- Coutinho, Felipe H.;
- Amgarten, Deyvid E.;
- Kot, Witold;
- Hansen, Lars;
- Setubal, João C.;
- Philippot, Laurent
Publication type:
Article
The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity.
Published in:
PLoS Pathogens, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.ppat.1002130
By:
- Cai, Rongman;
- Lewis, James;
- Yan, Shuangchun;
- Liu, Haijie;
- Clarke, Christopher R.;
- Campanile, Francesco;
- Almeida, Nalvo F.;
- Studholme, David J.;
- Lindeberg, Magdalen;
- Schneider, David;
- Zaccardelli, Massimo;
- Setubal, Joao C.;
- Morales-Lizcano, Nadia P.;
- Bernal, Adriana;
- Coaker, Gitta;
- Baker, Christy;
- Bender, Carol L.;
- Leman, Scotland;
- Vinatzer, Boris A.
Publication type:
Article
A Tropical Composting Operation Unit at São Paulo Zoo as a Source of Bacterial Proteolytic Enzymes.
Published in:
Applied Biochemistry & Biotechnology, 2019, v. 187, n. 1, p. 282, doi. 10.1007/s12010-018-2810-7
By:
- Ramos, Patrícia L.;
- Kondo, Márcia Y.;
- Santos, Saara M. B.;
- de Vasconcellos, Suzan P.;
- Rocha, Rafael C. S.;
- da Cruz, João B.;
- Eugenio, Patrícia F. M.;
- Cabral, Hamilton;
- Juliano, Maria A.;
- Juliano, Luiz;
- Setubal, João C.;
- da Silva, Aline M.;
- Cappelini, Luciana T. D.
Publication type:
Article
Genome-Centric Analysis of a Thermophilic and Cellulolytic Bacterial Consortium Derived from Composting.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.00644
By:
- Lemos, Leandro N.;
- Pereira, Roberta V.;
- Quaggio, Ronaldo B.;
- Martins, Layla F.;
- Moura, Livia M. S.;
- da Silva, Amanda R.;
- Antunes, Luciana P.;
- da Silva, Aline M.;
- Setubal, João C.
Publication type:
Article
16S rRNA Gene Amplicon Sequencing Data of the Iron Quadrangle Ferruginous Caves (Brazil) Shows the Importance of Conserving This Singular and Threatened Geosystem.
Published in:
Diversity (14242818), 2021, v. 13, n. 10, p. 494, doi. 10.3390/d13100494
By:
- Lemes, Camila G. C.;
- Villa, Morghana M.;
- Felestrino, Érica B.;
- Perucci, Luiza O.;
- Assis, Renata A. B.;
- Cordeiro, Isabella F.;
- Fonseca, Natasha P.;
- Guerra, Lara C. C.;
- Caneschi, Washington L.;
- Moraes, Lauro Â. G.;
- do Carmo, Flávio F.;
- Kamino, Luciana H. Y.;
- Vale, Pedro N. C.;
- Guima, Suzana E. S.;
- Setubal, João C.;
- Salgado, André A. R.;
- Moreira, Leandro M.
Publication type:
Article
Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology.
Published in:
BMC Microbiology, 2009, v. 9, p. 1, doi. 10.1186/1471-2180-9-S1-S2
By:
- Tsai-Tien Tseng;
- Tyler, Brett M.;
- Setubal, João C.
Publication type:
Article
The Pathogen Resource Integration Center: Implications for Rickettsial Research.
Published in:
Annals of the New York Academy of Sciences, 2005, v. 1063, n. 1, p. 459, doi. 10.1196/annals.1355.066
By:
- HANCE, MARK E.;
- CZAR, MICHAEL J.;
- AZAD, ABDU;
- PURKAYASTHA, ANJAN;
- SNYDER, ERIC E.;
- CRASTA, OSWALD R.;
- SETUBAL, JOAO C.;
- SOBRAL, BRUNO W.
Publication type:
Article
Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq.
Published in:
PLoS Neglected Tropical Diseases, 2015, v. 9, n. 12, p. 1, doi. 10.1371/journal.pntd.0004334
By:
- Anderson, Letícia;
- Amaral, Murilo S.;
- Beckedorff, Felipe;
- Silva, Lucas F.;
- Dazzani, Bianca;
- Oliveira, Katia C.;
- Almeida, Giulliana T.;
- Gomes, Monete R.;
- Pires, David S.;
- Setubal, João C.;
- DeMarco, Ricardo;
- Verjovski-Almeida, Sergio
Publication type:
Article
SIS: a program to generate draft genome sequence scaffolds for prokaryotes.
Published in:
BMC Bioinformatics, 2012, v. 13, n. 1, p. 96, doi. 10.1186/1471-2105-13-96
By:
- Dias, Zanoni;
- Dias, Ulisses;
- Setubal, Joāo C.
Publication type:
Article
Prophylactic Supplementation of Bifidobacterium longum 5<sup>1A</sup> Protects Mice from Ovariectomy-Induced Exacerbated Allergic Airway Inflammation and Airway Hyperresponsiveness.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01732
By:
- Mendes, Eduardo;
- Acetturi, Beatriz G.;
- Thomas, Andrew M.;
- Martins, Flaviano dos S.;
- Crisma, Amanda R.;
- Murata, Gilson;
- Braga, Tárcio T.;
- Camâra, Niels O. S.;
- Franco, Adriana L. dos S.;
- Setubal, João C.;
- Ribeiro, Willian R.;
- Valduga, Claudete J.;
- Rui Curi;
- Dias-Neto, Emmanuel;
- Tavares-de-Lima, Wothan;
- Ferreira, Caroline M.
Publication type:
Article
Core Microbial Functional Activities in Ocean Environments Revealed by Global Metagenomic Profiling Analyses.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0097338
By:
- Ferreira, Ari J. S.;
- Siam, Rania;
- Setubal, João C.;
- Moustafa, Ahmed;
- Sayed, Ahmed;
- Chambergo, Felipe S.;
- Dawe, Adam S.;
- Ghazy, Mohamed A.;
- Sharaf, Hazem;
- Ouf, Amged;
- Alam, Intikhab;
- Abdel-Haleem, Alyaa M.;
- Lehvaslaiho, Heikki;
- Ramadan, Eman;
- Antunes, André;
- Stingl, Ulrich;
- Archer, John A. C.;
- Jankovic, Boris R.;
- Sogin, Mitchell;
- Bajic, Vladimir B.
Publication type:
Article
Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost- Effective High-Throughput Analysis.
Published in:
PLoS ONE, 2009, v. 4, n. 12, p. 1, doi. 10.1371/journal.pone.0008338
By:
- Dias-Neto, Emmanuel;
- Nunes, Diana N.;
- Giordano, Ricardo J.;
- Sun, Jessica;
- Botz, Gregory H.;
- Kuan Yang;
- Setubal, João C.;
- Pasqualini, Renata;
- Arap, Wadih
Publication type:
Article
An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved.
Published in:
PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004833
By:
- Gillespie, Joseph J.;
- Ammerman, Nicole C.;
- Dreher-Lesnick, Sheila M.;
- Rahman, M. Sayeedur;
- Worley, Micah J.;
- Setubal, Joao C.;
- Sobral, Bruno S.;
- Azad, Abdu F.
Publication type:
Article
Rickettsia Phylogenomics: Unwinding the Intricacies of Obligate Intracellular Life.
Published in:
PLoS ONE, 2008, v. 3, n. 4, p. 1, doi. 10.1371/journal.pone.0002018
By:
- Gillespie, Joseph J.;
- Williams, Kelly;
- Shukla, Maulik;
- Snyder, Eric E.;
- Nordberg, Eric K.;
- Ceraul, Shane M.;
- Dharmanolla, Chitti;
- Rainey, Daphne;
- Soneja, Jeetendra;
- Shallom, Joshua M.;
- Dongre^Vishnubhat, Nataraj;
- Wattam, Rebecca;
- Purkayastha, Anjan;
- Czar, Michael;
- Crasta, Oswald;
- Setubal, Joao C.;
- Azad, Abdu F.;
- Sobral, Bruno S.
Publication type:
Article
Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios.
Published in:
Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00822-z
By:
- Braga, Lucas P. P.;
- Spor, Aymé;
- Kot, Witold;
- Breuil, Marie-Christine;
- Hansen, Lars H.;
- Setubal, João C.;
- Philippot, Laurent
Publication type:
Article
Tissue-Associated BacterialAlterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling.
Published in:
Frontiers in Cellular & Infection Microbiology, 2016, v. 6, p. 1, doi. 10.3389/fcimb.2016.00179
By:
- Thomas, Andrew M.;
- Jesus, Eliane C.;
- Lopes, Ademar;
- Jr., Samuel Aguiar;
- Begnami, Maria D.;
- Rocha, Rafael M.;
- Camargo, Anamaria A.;
- Hoffmann, Christian;
- Freitas, Helano C.;
- Silva, Israel T.;
- Nunes, Diana N.;
- Setubal, João C.;
- Dias-Neto, Emmanuel;
- Avelar Carpinetti, Paola
Publication type:
Article
Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 10, p. 2128, doi. 10.1038/ismej.2015.15
By:
- Zhang, Yunzeng;
- Jalan, Neha;
- Zhou, Xiaofeng;
- Goss, Erica;
- Jones, Jeffrey B;
- Setubal, João C;
- Deng, Xiaoling;
- Wang, Nian
Publication type:
Article
A transcriptome-based signature of pathological angiogenesis predicts breast cancer patient survival.
Published in:
PLoS Genetics, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pgen.1008482
By:
- Guarischi-Sousa, Rodrigo;
- Monteiro, Jhonatas S.;
- Alecrim, Lilian C.;
- Michaloski, Jussara S.;
- Cardeal, Laura B.;
- Ferreira, Elisa N.;
- Carraro, Dirce M.;
- Nunes, Diana N.;
- Dias-Neto, Emmanuel;
- Reimand, Jüri;
- Boutros, Paul C.;
- Setubal, João C.;
- Giordano, Ricardo J.
Publication type:
Article
Insights into agar and secondary metabolite pathways from the genome of the red alga Gracilaria domingensis (Rhodophyta, Gracilariales).
Published in:
Journal of Phycology, 2022, v. 58, n. 3, p. 406, doi. 10.1111/jpy.13238
By:
- Nakamura‐Gouvea, Natalia;
- Alves‐Lima, Cicero;
- Benites, Luiz Felipe;
- Iha, Cintia;
- Maracaja‐Coutinho, Vinicius;
- Aliaga‐Tobar, Victor;
- Araujo Amaral Carneiro, Marcella;
- Yokoya, Nair S.;
- Marinho‐Soriano, Eliane;
- Graminha, Marcia A. S.;
- Collén, Jonas;
- Oliveira, Mariana C.;
- Setubal, Joao C.;
- Colepicolo, Pio
Publication type:
Article
Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity.
Published in:
Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00535
By:
- Schwartz, Allison R.;
- Potnis, Neha;
- Timilsina, Sujan;
- Wilson, Mark;
- Patané, José;
- Jr., Joaquim Martins;
- Minsavage, Gerald V.;
- Dahlbeck, Douglas;
- Akhunova, Alina;
- Almeida, Nalvo;
- Vallad, Gary E.;
- Barak, Jeri D.;
- White, Frank F.;
- Miller, Sally A.;
- Ritchie, David;
- Goss, Erica;
- Bart, Rebecca S.;
- Setubal, João C.;
- Jones, Jeffrey B.;
- Staskawicz, Brian J.
Publication type:
Article
Genetic resources for methane production from biomass described with the Gene Ontology.
Published in:
Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00634
By:
- Purwantini, Endang;
- Torto-Alalibo, Trudy;
- Lomax, Jane;
- Setubal, João C.;
- Tyler, Brett M.;
- Mukhopadhyay, Biswarup
Publication type:
Article
Genetic resources for advanced biofuel production described with the Gene Ontology.
Published in:
Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00528
By:
- Torto-Alalibo, Trudy;
- Purwantini, Endang;
- Lomax, Jane;
- Setubal, João C.;
- Mukhopadhyay, Biswarup;
- Tyler, Brett M.
Publication type:
Article
Editorial: Computational Methods for Microbiome Analysis.
Published in:
2020
By:
- Setubal, João C.;
- Stoye, Jens;
- Dutilh, Bas E.
Publication type:
Editorial
Comparative Analysis of Ralstonia solanacearum Methylomes.
Published in:
Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.00504
By:
- Erill, Ivan;
- Puigvert, Marina;
- Legrand, Ludovic;
- Guarischi-Sousa, Rodrigo;
- Vandecasteele, Céline;
- Setubal, João C.;
- Genin, Stephane;
- Guidot, Alice;
- Valls, Marc
Publication type:
Article
Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii.
Published in:
Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00370
By:
- Puigvert, Marina;
- Guarischi-Sousa, Rodrigo;
- Zuluaga, Paola;
- Coll, Núria S.;
- Macho, Alberto P.;
- Setubal, João C.;
- Valls, Marc
Publication type:
Article
Analyses of Seven New Genomes of Xanthomonas citri pv. aurantifolii Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes.
Published in:
Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02361
By:
- Fonseca, Natasha Peixoto;
- Patané, José S. L.;
- Varani, Alessandro M.;
- Felestrino, Érica Barbosa;
- Caneschi, Washington Luiz;
- Sanchez, Angélica Bianchini;
- Cordeiro, Isabella Ferreira;
- Lemes, Camila Gracyelle de Carvalho;
- Assis, Renata de Almeida Barbosa;
- Garcia, Camila Carrião Machado;
- Belasque Jr., José;
- Martins Jr., Joaquim;
- Facincani, Agda Paula;
- Ferreira, Rafael Marini;
- Jaciani, Fabrício José;
- Almeida, Nalvo Franco de;
- Ferro, Jesus Aparecido;
- Moreira, Leandro Marcio;
- Setubal, João C.
Publication type:
Article
Sequence verification of synthetic DNA by assembly of sequencing reads.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 1, p. e25, doi. 10.1093/nar/gks908
By:
- Wilson, Mandy L.;
- Cai, Yizhi;
- Hanlon, Regina;
- Taylor, Samantha;
- Chevreux, Bastien;
- Setubal, João C.;
- Tyler, Brett M.;
- Peccoud, Jean
Publication type:
Article
REGEN: Ancestral Genome Reconstruction for Bacteria.
Published in:
Genes, 2012, v. 3, n. 3, p. 423, doi. 10.3390/genes3030423
By:
- Kuan Yang;
- Heath, Lenwood S.;
- Setubal, João C.
Publication type:
Article
Co-carriage of Plasmid NDM and Chromosomal KPC in Klebsiella pneumoniae ST255 Human Wound Isolate in Brazil.
Published in:
Current Microbiology, 2023, v. 80, n. 12, p. 1, doi. 10.1007/s00284-023-03509-4
By:
- Boettger, Bruno C.;
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- Pignatari, Antônio C. C.
Publication type:
Article
Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host.
Published in:
PeerJ, 2024, p. 1, doi. 10.7717/peerj.17206
By:
- Carhuaricra-Huaman, Dennis;
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- Ramos, Patricia L.;
- da Silva, Aline M.;
- Setubal, Joao C.
Publication type:
Article
Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.7676
By:
- Fonseca, Natasha P.;
- Felestrino, Érica B.;
- Caneschi, Washington L.;
- Sanchez, Angélica B.;
- Cordeiro, Isabella F.;
- Lemes, Camila G. C.;
- Assis, Renata A. B.;
- Carvalho, Flávia M. S.;
- Ferro, Jesus A.;
- Varani, Alessandro M.;
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- Setubal, Joao C.;
- Telles, Guilherme P.;
- Aguena, Deiviston S.;
- Almeida, Nalvo F.;
- Moreira, Leandro M.
Publication type:
Article
Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection.
Published in:
BMC Microbiology, 2017, v. 17, p. 1, doi. 10.1186/s12866-017-1063-x
By:
- Moreira, Leandro M.;
- Soares, Márcia R.;
- Facincani, Agda P.;
- Ferreira, Cristiano B.;
- Ferreira, Rafael M.;
- Ferro, Maria I. T.;
- Gozzo, Fábio C.;
- Felestrino, Érica B.;
- Assis, Renata A. B.;
- Garcia, Camila Carrião M.;
- Setubal, João C.;
- Ferro, Jesus A.;
- de Oliveira, Julio C. F.
Publication type:
Article

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