Works matching DE "RNA sequencing"

Results: 5000

Construction of Diagnostic Model for Regulatory T Cell-Related Genes in Sepsis Based on Machine Learning.

Published in:

Biomedicines, 2025, v. 13, n. 5, p. 1060, doi. 10.3390/biomedicines13051060

By:

Wang, Xuesong;
Guo, Zhe;
Wang, Xinrui;
Wang, Zhong

Publication type:

Article

Prevalence and Diversity of Haemosporidian–Associated Matryoshka RNA Viruses in a Natural Population of Wild Birds.

Published in:

Ecology & Evolution (20457758), 2025, v. 15, n. 5, p. 1, doi. 10.1002/ece3.71239

By:

Esperanza, Carlos W.;
Faircloth, Caroline E.;
Roy, Scott W.;
Sehgal, Ravinder N. M.

Publication type:

Article

Integrated Analysis of Long Non-Coding RNAs and mRNAs Reveals Key Trans-Target Genes Associated with Heat Stress Response in Rhododendron delavayi.

Published in:

Life (2075-1729), 2025, v. 15, n. 5, p. 697, doi. 10.3390/life15050697

By:

Liu, Changming;
Liu, Yang;
Zhang, Xinyue;
An, Lujie;
Tian, Zhiguo

Publication type:

Article

Serine Hydroxymethyltransferase Modulates Midgut Physiology in Aedes aegypti Through miRNA Regulation: Insights from Small RNA Sequencing and Gene Expression Analysis.

Published in:

Biomolecules (2218-273X), 2025, v. 15, n. 5, p. 644, doi. 10.3390/biom15050644

By:

Pu, Qian;
Han, Yujiao;
Su, Zhuanzhuan;
Ren, Houming;
Ou, Qingshan;
Kashyap, Symphony;
Liu, Shiping

Publication type:

Article

FPCAM: A Weighted Dictionary-Driven Model for Single-Cell Annotation in Pulmonary Fibrosis.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 479, doi. 10.3390/biology14050479

By:

Liu, Guojun;
Shi, Yan;
Huang, Hongxu;
Xiao, Ningkun;
Liu, Chuncheng;
Zhao, Hongyu;
Xing, Yongqiang;
Cai, Lu

Publication type:

Article

Androgens alleviate the depression-like phenotype in female mice by inhibiting AVPR1a in the hippocampal brain region.

Published in:

Molecular Medicine, 2025, v. 31, n. 1, p. 1, doi. 10.1186/s10020-025-01272-9

By:

Ren, Shimin;
Wang, Xian;
Huang, Xueying;
Chen, Liyang;
Zhang, Bing;
Li, Yang;
Huang, Xin

Publication type:

Article

Cracking rare disorders: a new minimally invasive RNA-seq protocol.

Published in:

NPJ Genomic Medicine, 2025, v. 10, n. 1, p. 1, doi. 10.1038/s41525-025-00502-7

By:

De Cock, Laurenz;
D'haenens, Erika;
Vantomme, Lies;
Backers, Lynn;
Beyens, Aude;
Claes, Kathleen BM;
De Clercq, Griet;
de Putter, Robin;
Kumps, Candy;
Schuermans, Nika;
Sourbron, Jo;
Syryn, Hannes;
Tavernier, Simon;
Vanbelleghem, Eva;
Vanakker, Olivier;
Vandekerckhove, Bart;
Van Damme, Tim;
Callewaert, Bert;
Dheedene, Annelies;
Vergult, Sarah

Publication type:

Article

Intercellular communication between FAP+ fibroblasts and SPP1+ macrophages in prostate cancer via multi-omics.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1560998

By:

Wu, Tingting;
Li, Xinyu;
Zheng, Fei;
Liu, Hanchao;
Yu, Yang

Publication type:

Article

Prognosis of cholangiocarcinoma patients based on multiple patterns of programmed cell death, integrated analysis of the immune microenvironment and drug sensitivity.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1457204

By:

Xu, Yupeng;
Sun, Jian;
Yan, Xin;
Mao, Zhenliao;
Chen, Yiming

Publication type:

Article

Unraveling the Transcriptomic Profiles of Large and Small Donkey Follicles.

Published in:

Genes, 2025, v. 16, n. 5, p. 602, doi. 10.3390/genes16050602

By:

Wang, Yanping;
Gao, Zihao;
Zhang, Qiang;
Guo, Xuchuan;
Xia, Wei;
Gu, Xinli;
Zeng, Weibin

Publication type:

Article

Transcriptomic Approach in Understanding Fabry Nephropathy: A Review of the Literature and Proof-of-Concept.

Published in:

Genes, 2025, v. 16, n. 5, p. 601, doi. 10.3390/genes16050601

By:

Breznik, Nika;
Levstek, Tina;
Vujkovac, Bojan;
Cokan Vujkovac, Andreja;
Trebušak Podkrajšek, Katarina

Publication type:

Article

RNA-Seq of Chicken Embryo Liver Reveals Transcriptional Pathways Influenced by Egg Formaldehyde Treatment.

Published in:

Genes, 2025, v. 16, n. 5, p. 471, doi. 10.3390/genes16050471

By:

Özdemir, Mustafa;
Sajid, Ghulam Asghar;
Büyükkılıç Beyzi, Selma;
Kızılaslan, Mehmet;
Arzık, Yunus;
Yalçın, Servet;
White, Stephen N.;
Cinar, Mehmet Ulas

Publication type:

Article

Linking transcriptome and morphology in bone cells at cellular resolution with generative AI.

Published in:

Journal of Bone & Mineral Research, 2025, v. 40, n. 1, p. 20, doi. 10.1093/jbmr/zjae151

By:

Lu, Lu;
Ono, Noriaki;
Welch, Joshua D

Publication type:

Article

Single Cell RNA Sequencing of Papillary Cancer Mesenchymal Stem/Stromal Cells Reveals a Transcriptional Profile That Supports a Role for These Cells in Cancer Progression.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4957, doi. 10.3390/ijms26104957

By:

Jandu, Danny;
Latar, Nani;
Bajrami, Artida;
Queen, Rachel;
Hasoon, Megan;
Teasdale, Matthew;
Hussain, Rafiqul;
Coxhead, Jonathan;
Aspinall, Sebastian;
Meeson, Annette

Publication type:

Article

Therapeutic Potential of Quadrigemine I Against Lymphoma: Mechanistic Insights from Cell Lines and Xenograft Models Demonstrating DNA Damage, Oxidative Stress, and Pathway Regulation.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4848, doi. 10.3390/ijms26104848

By:

Pu, Junmei;
Shi, Wenfeng;
Cui, Jiabao;
Yang, Hui;
Cao, Jianxin;
Liu, Yaping;
Xiao, Shanshan;
Cheng, Guiguang

Publication type:

Article

Serum RNA Profile Reflects Fluid Status and Atrophic Retinal Changes in Neovascular Age-Related Macular Degeneration.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4852, doi. 10.3390/ijms26104852

By:

Heloterä, Hanna;
Kostanek, Joanna;
Liukkonen, Mikko;
Siintamo, Leea;
Linna-Kuosmanen, Suvi;
Watala, Cezary;
Blasiak, Janusz;
Kaarniranta, Kai

Publication type:

Article

NetLnc: A Network-Based Computational Framework to Identify Immune Checkpoint-Related lncRNAs for Immunotherapy Response in Melanoma.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4557, doi. 10.3390/ijms26104557

By:

Lu, Qianyi;
Li, Jian;
Chen, Wenli;
Wang, Zhuoru;
Wang, Di;
Liu, Chenyu;
Sun, Yue;
Jiang, Han;
Zhang, Caiyu;
Chang, Yetong;
Zhou, Jiajun;
Wu, Xiaohong;
Gao, Yue;
Ning, Shangwei

Publication type:

Article

Integrating Dynamical Systems Modeling with Spatiotemporal scRNA-Seq Data Analysis.

Published in:

Entropy, 2025, v. 27, n. 5, p. 453, doi. 10.3390/e27050453

By:

Zhang, Zhenyi;
Sun, Yuhao;
Peng, Qiangwei;
Li, Tiejun;
Zhou, Peijie

Publication type:

Article

A regularized Bayesian Dirichlet-multinomial regression model for integrating single-cell-level omics and patient-level clinical study data.

Published in:

Biometrics, 2025, v. 81, n. 1, p. 1, doi. 10.1093/biomtc/ujaf005

By:

Guo, Yanghong;
Yu, Lei;
Guo, Lei;
Xu, Lin;
Li, Qiwei

Publication type:

Article

Methanogenic symbionts of anaerobic ciliates are host and habitat specific.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae164

By:

Méndez-Sánchez, Daniel;
Schrecengost, Anna;
Rotterová, Johana;
Koštířová, Kateřina;
Beinart, Roxanne A;
Čepička, Ivan

Publication type:

Article

Divergent marine anaerobic ciliates harbor closely related Methanocorpusculum endosymbionts.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae125

By:

Schrecengost, Anna;
Rotterová, Johana;
Poláková, Kateřina;
Čepička, Ivan;
Beinart, Roxanne A

Publication type:

Article

Phylogenomic position of eupelagonemids, abundant, and diverse deep-ocean heterotrophs.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae040

By:

Lax, Gordon;
Okamoto, Noriko;
Keeling, Patrick J

Publication type:

Article

Bacterial adenine cross-feeding stems from a purine salvage bottleneck.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae034

By:

Chuang, Ying-Chih;
Haas, Nicholas W;
Pepin, Robert;
Behringer, Megan G;
Oda, Yasuhiro;
LaSarre, Breah;
Harwood, Caroline S;
McKinlay, James B

Publication type:

Article

Taxonomic and functional stability overrules seasonality in polar benthic microbiomes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad005

By:

Miksch, Sebastian;
Orellana, Luis H;
Oggerin de Orube, Monike;
Vidal-Melgosa, Silvia;
Solanki, Vipul;
Hehemann, Jan-Hendrik;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

Prognostic significance of copper metabolism-related genes as risk markers in bladder urothelial carcinoma.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2025, v. 44, n. 7, p. 598, doi. 10.1080/15257770.2024.2387783

By:

Zhang, Jiamo;
Yang, Houwei;
Zhang, Xuan;
Chen, Jiangchuan;
Luo, Huaming;
Li, Changlong;
Chen, Xin

Publication type:

Article

Estradiol Reverses Ovariectomy-Induced Disruption of Hypothalamic Gene Expression and Behavior via Modulation of Gonadotropin Releasing Hormone and Calcium Signaling Pathways.

Published in:

Animals (2076-2615), 2025, v. 15, n. 10, p. 1467, doi. 10.3390/ani15101467

By:

Muhammad, Asim;
Muhammad, Mubashir;
Chao, Xiaohuan;
Zhang, Chunlei;
Chen, Jiahao;
Yang, Huan;
Liu, Shuhan;
Ding, Yuan;
Wang, Ziming;
Bi, Hongwei;
Guo, Wen;
Fan, Junhong;
Zhou, Bo

Publication type:

Article

Systematic Analysis of Biological Processes Reveals Gene Co-expression Modules Driving Pathway Dysregulation in Alzheimer's Disease.

Published in:

Aging & Disease, 2025, v. 16, n. 3, p. 1598, doi. 10.14336/AD.2024.0429

By:

Adeoye, Temitope;
Shah, Syed I.;
Ullah, Ghanim

Publication type:

Article

The Microbiome in Bronchial Biopsies from Smokers and Ex-Smokers with Stable COPD - A Metatranscriptomic Approach.

Published in:

COPD: Journal of Chronic Obstructive Pulmonary Disease, 2022, v. 19, n. 1, p. 81, doi. 10.1080/15412555.2022.2033193

By:

Ditz, B.;
Boekhoudt, J.;
Couto, N.;
Brandsma, C. A.;
Hiemstra, P. S.;
Tew, G. W.;
Neighbors, M.;
Grimbaldeston, M. A.;
Timens, W.;
Kerstjens, H. A. M.;
Rossen, J. W. A.;
Guryev, V.;
van den Berge, M.;
Faiz, A.

Publication type:

Article

Single Sperm RNA signatures reveal MicroRNA biomarkers for male subfertility.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 11, p. 3119, doi. 10.1007/s10815-024-03264-w

By:

Abu-Halima, Masood;
Fischer, Ulrike;
Al Smadi, Mohammad A.;
Ludwig, Nicole;
Acheli, Anissa;
Engel, Annika;
Abdul-Khaliq, Hashim;
Meese, Eckart

Publication type:

Article

Enrichment of cell cycle pathways in progesterone-treated endometrial organoids of infertile women compared to fertile women.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 9, p. 2405, doi. 10.1007/s10815-024-03173-y

By:

Bui, B. N.;
Ardisasmita, A. I.;
van de Vliert, F. H.;
Abendroth, M. S.;
van Hoesel, M.;
Mackens, S.;
Fuchs, S. A.;
Nieuwenhuis, E. E. S.;
Broekmans, F. J. M.;
Steba, G. S.

Publication type:

Article

Identification of novel compound heterozygous ZFP36L2 variants implicated in oocyte maturation defects and female infertility.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 8, p. 1955, doi. 10.1007/s10815-024-03154-1

By:

Wan, Xian;
Hu, Huiling;
Sun, Jiaqi;
Meng, Fei;
Gong, Fei;
Lin, Ge;
Liao, Hongqing;
Zheng, Wei

Publication type:

Article

Influx of zwitterionic buffer after intracytoplasmic sperm injection (ICSI) membrane piercing alters the transcriptome of human oocytes.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 5, p. 1341, doi. 10.1007/s10815-024-03064-2

By:

Mendola, Robert J.;
Biswas, Leelabati;
Schindler, Karen;
Walmsley, Renee H.;
Russell, Helena;
Angle, Marlane;
Garrisi, G. John

Publication type:

Article

TOB1 modulates the decidualization of human endometrial stromal cells via the Notch pathway.

Published in:

Journal of Assisted Reproduction & Genetics, 2021, v. 38, n. 10, p. 2641, doi. 10.1007/s10815-021-02277-z

By:

Jiang, Yaling;
Yuan, Xinhua;
Li, Bing;
Liu, Mingxing;
Shi, Yu;
Feng, Jianhuai;
Zhou, Hua;
Ou, Miaoxian;
Huang, Xiaozhen

Publication type:

Article

Forecasting early onset diminished ovarian reserve for young reproductive age women.

Published in:

Journal of Assisted Reproduction & Genetics, 2021, v. 38, n. 7, p. 1853, doi. 10.1007/s10815-021-02155-8

By:

McCallie, Blair R.;
Haywood, Mary;
Denomme, Michelle M.;
Makloski, Rachel;
Parks, Jason C.;
Griffin, Darren K.;
Schoolcraft, William B.;
Katz-Jaffe, Mandy G.

Publication type:

Article

Testicular piRNA profile comparison between successful and unsuccessful micro-TESE retrieval in NOA patients.

Published in:

Journal of Assisted Reproduction & Genetics, 2018, v. 35, n. 5, p. 801, doi. 10.1007/s10815-018-1134-4

By:

Cao, Congcong;
Wen, Yujiao;
Wang, Xiaoli;
Fang, Na;
Yuan, Shuiqiao;
Huang, Xunbin

Publication type:

Article

Stromal Expression Profiling Reveals Immune‐Driven Adaption to Malignancy in Canine Melanoma Subtypes.

Published in:

Veterinary & Comparative Oncology, 2025, v. 23, n. 1, p. 20, doi. 10.1111/vco.13021

By:

Beebe, Erin;
Krudewig, Christiane;
Motamed, Zahra;
Malbon, Alexandra;
Markkanen, Enni

Publication type:

Article

Defining the relevance of surgical margins. Part two: Strategies to improve prediction of recurrence risk.

Published in:

Veterinary & Comparative Oncology, 2023, v. 21, n. 2, p. 145, doi. 10.1111/vco.12881

By:

Bray, Jonathan;
Eward, Will;
Breen, Matthew

Publication type:

Article

Identification of In‐Droplet Multicellular Communities by Light‐Induced Combinatorial DNA Barcoding.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 53, p. 1, doi. 10.1002/chem.202301133

By:

Kawasaki, Fumiko;
Mori, Yuka;
Mimori, Takahiro;
Sato., Issei;
Ota, Sadao

Publication type:

Article

High-Throughput Mutational Analysis of a Twister Ribozyme.

Published in:

Angewandte Chemie, 2016, v. 128, n. 35, p. 10510, doi. 10.1002/ange.201605470

By:

Kobori, Shungo;
Yokobayashi, Yohei

Publication type:

Article

Reconstitution of Biosynthetic Machinery for the Synthesis of the Highly Elaborated Indole Diterpene Penitrem.

Published in:

Angewandte Chemie, 2015, v. 127, n. 19, p. 5840, doi. 10.1002/anie.201501072

By:

Chengwei Liu;
Koichi Tagami;
Atsushi Minami;
Tomoyuki Matsumoto;
Frisvad, Jens Christian;
Hideyuki Suzuki;
Jun Ishikawa;
Katsuya Gomi;
Hideaki Oikawa

Publication type:

Article

High-Resolution N6-Methyladenosine (m6A) Map Using Photo-Crosslinking-Assisted m6A Sequencing.

Published in:

Angewandte Chemie, 2015, v. 127, n. 5, p. 1607, doi. 10.1002/ange.201410647

By:

Kai Chen;
Zhike Lu;
Xiao Wang;
Ye Fu;
Guan-Zheng Luo;
Nian Liu;
Dali Han;
Dan Dominissini;
Qing Dai;
Tao Pan;
Chuan He

Publication type:

Article

Global transcriptome analyses provide evidence that chloroplast redox state contributes to intracellular as well as long-distance signalling in response to stress and acclimation in Arabidopsis.

Published in:

Photosynthesis Research, 2016, v. 128, n. 3, p. 287, doi. 10.1007/s11120-016-0245-y

By:

Bode, Rainer;
Ivanov, Alexander;
Hüner, Norman

Publication type:

Article

Use of RNA Sequencing to Perform Comprehensive Analysis of Long Noncoding RNA Expression Profiles in Macrophages Infected with Trichosporon asahii.

Published in:

Mycopathologia, 2021, v. 186, n. 3, p. 355, doi. 10.1007/s11046-021-00552-2

By:

Zhang, Mingwang;
Xia, Zhikuan;
Zhang, Dequan;
Yang, Xin;
Ao, Junhong;
Yang, Rongya

Publication type:

Article

Single-cell RNA sequencing of neonatal cortical astrocytes reveals versatile cell clusters during astrocyte-neuron conversion.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-025-10309-5

By:

Cha, Jiaxue;
Zeng, Peng;
Zong, Hui;
Zhao, Jiayi;
Chen, Jiayao;
Zuo, Haowei;
Zhang, Bowen;
Shi, Changjie;
Li, Jing;
Hua, Qiuhong;
Wang, Zixin;
Hou, Yujun;
Zhang, Ru

Publication type:

Article

Potential prognostic and predictive biomarkers: METTL5, METTL7A, and METTL7B expression in gastrointestinal cancers.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-024-10207-2

By:

Heydari, Soraya;
Peymani, Maryam;
Hashemi, Mehrdad;
Ghaedi, Kamran;
Entezari, Maliheh

Publication type:

Article

Correction: Study on the mechanism of heterogeneous tumor-associated macrophages in three subtypes of breast cancer through the integration of single-cell RNA sequencing and in vitro experiments.

Published in:

2024

By:

Yuan, Yan;
Zhang, Shu;
Huang, Jian

Publication type:

Correction Notice

Study on the mechanism of heterogeneous tumor-associated macrophages in three subtypes of breast cancer through the integration of single-cell RNA sequencing and in vitro experiments.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09665-5

By:

Yuan, Yan;
Zhang, Shu;
Huang, Jian

Publication type:

Article

ScRNA-seq and bulk RNA-seq identified NUPR1 as novel biomarkers related to CD4 + T cells infiltration for abdominal aortic aneurysm.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-10050-5

By:

Zhou, Zhihao;
Deng, Tang;
Liu, Suling;
Huang, Lin;
Wang, Kangjie;
Kan, Qinghui;
He, Rongzhou;
Yao, Chen

Publication type:

Article

Anti-tumor potential of high salt in breast Cancer cell lines.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09925-4

By:

Sharma, Manoj;
Dey, Upalabdha;
Das, Anindhya Sundar;
Olymon, Kaushika;
Kumar, Aditya;
Mukhopadhyay, Rupak

Publication type:

Article

Leukocyte-and Platelet-Rich Fibrin for enhanced tissue repair: an in vitro study characterizing cellular composition, growth factor kinetics and transcriptomic insights.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09890-y

By:

Coucke, Birgit;
Dilissen, Ellen;
Cremer, Jonathan;
Schrijvers, Rik;
Theys, Tom;
Van Gerven, Laura

Publication type:

Article