Works matching DE "SCAFFOLD proteins"

Results: 1970

The DNA Topoisomerase 1 Contributes to Stress Response in Saccharomyces cerevisiae , Regardless Its Catalytic Activity.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 499, doi. 10.3390/biology14050499

By:

D'Alfonso, Anna;
Egidi, Alessandra;
Proietti, Ludovica;
Camilloni, Giorgio

Publication type:

Article

Low-Temperature Electrospinning-Fabricated Three-Dimensional Nanofiber Scaffolds for Skin Substitutes.

Published in:

Micromachines, 2025, v. 16, n. 5, p. 552, doi. 10.3390/mi16050552

By:

Dai, Qiqi;
Liu, Huazhen;
Sun, Wenbin;
Zhang, Yi;
Cai, Weihuang;
Lu, Chunxiang;
Luo, Kaidi;
Liu, Yuanyuan;
Wang, Yeping

Publication type:

Article

Improved Bone Regeneration Using Biodegradable Polybutylene Succinate Artificial Scaffold with BMP-2 Protein in a Rabbit Model.

Published in:

Materials (1996-1944), 2025, v. 18, n. 10, p. 2234, doi. 10.3390/ma18102234

By:

Vigni, Giulio Edoardo;
Licciardi, Mariano;
D'itri, Lorenzo;
Terracina, Francesca;
Scirè, Sergio;
Arrabito, Giuseppe;
Pignataro, Bruno;
Camarda, Lawrence;
Cassata, Giovanni;
Puleio, Roberto;
Di Silvestre, Lucio;
Cicero, Luca

Publication type:

Article

Phase Separation: Orchestrating Biological Adaptations to Environmental Fluctuations.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4614, doi. 10.3390/ijms26104614

By:

Wang, Wenxiu;
Han, Fangbing;
Qi, Zhi;
Yan, Chunxia;
Su, Bodan;
Wang, Jin

Publication type:

Article

Control of repeat-protein curvature by computational protein design.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 2, p. 167, doi. 10.1038/nsmb.2938

By:

Park, Keunwan;
Shen, Betty W;
Parmeggiani, Fabio;
Huang, Po-Ssu;
Stoddard, Barry L;
Baker, David

Publication type:

Article

Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 8, p. 696, doi. 10.1038/nsmb.2846

By:

Park, Suk-Youl;
Park, Jung-Eun;
Kim, Tae-Sung;
Kim, Ju Hee;
Kwak, Mi-Jeong;
Ku, Bonsu;
Tian, Lan;
Murugan, Ravichandran N;
Ahn, Mija;
Komiya, Shinobu;
Hojo, Hironobu;
Kim, Nam-Hyung;
Kim, Bo Yeon;
Bang, Jeong K;
Erikson, Raymond L;
Lee, Ki Won;
Kim, Seung Jun;
Oh, Byung-Ha;
Yang, Wei;
Lee, Kyung S

Publication type:

Article

A protein-RNA specificity code enables targeted activation of an endogenous human transcript.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 8, p. 732, doi. 10.1038/nsmb.2847

By:

Campbell, Zachary T;
Valley, Cary T;
Wickens, Marvin

Publication type:

Article

Structural characterization of a misfolded intermediate populated during the folding process of a PDZ domain.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 12, p. 1431, doi. 10.1038/nsmb.1956

By:

Gianni, Stefano;
Ivarsson, Ylva;
De Simone, Alfonso;
Travaglini-Allocatelli, Carlo;
Brunori, Maurizio;
Vendruscolo, Michele

Publication type:

Article

Loss of PMFBP1 Disturbs Mouse Spermatogenesis by Downregulating HDAC3 Expression.

Published in:

Journal of Assisted Reproduction & Genetics, 2023, v. 40, n. 8, p. 1865, doi. 10.1007/s10815-023-02874-0

By:

Xu, Weilong;
Yao, Zhoujuan;
Li, Yunzhi;
Wang, Ke;
Kong, Shuai;
Wang, Yu;
Xiang, Mingfei;
Zhu, Fuxi;
Wang, Fengsong;
Zhang, Hui

Publication type:

Article

'Bio'-Macromolecules: Polymer-Protein Conjugates as Emerging Scaffolds for Therapeutics.

Published in:

Macromolecular Rapid Communications, 2014, v. 35, n. 1, p. 27, doi. 10.1002/marc.201300792

By:

Borchmann, Dorothee E.;
Carberry, Tom P.;
Weck, Marcus

Publication type:

Article

Benzylic C(sp<sup>3</sup>)−H Bond Oxidation with Ketone Selectivity by a Cobalt(IV)‐Oxo Embedded in a β‐Barrel Protein.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 5, p. 1, doi. 10.1002/chem.202303066

By:

Wang, Dong;
Ingram, Aaron A.;
Okumura, Akira;
Spaniol, Thomas P.;
Schwaneberg, Ulrich;
Okuda, Jun

Publication type:

Article

Enhanced Photocatalytic Hydrogen Production by Hybrid Streptavidin‐Diiron Catalysts.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 28, p. 6240, doi. 10.1002/chem.202000204

By:

Roy, Anindya;
Vaughn, Michael D.;
Tomlin, John;
Booher, Garrett J.;
Kodis, Gerdenis;
Simmons, Chad R.;
Allen, James P.;
Ghirlanda, Giovanna

Publication type:

Article

Frontispiece: Patterning Porous Networks through Self‐Assembly of Programmed Biomacromolecules.

Published in:

Chemistry - A European Journal, 2019, v. 25, n. 71, p. N.PAG, doi. 10.1002/chem.201987162

By:

Carloni, Laure‐Elie;
Bezzu, C. Grazia;
Bonifazi, Davide

Publication type:

Article

Conformational Switching of π-Conjugated Junctions from Merocyanine to Cyanine States by Solvent Polarity.

Published in:

Angewandte Chemie, 2016, v. 128, n. 7, p. 2516, doi. 10.1002/ange.201510620

By:

Arjona‐Esteban, Alhama;
Stolte, Matthias;
Würthner, Frank

Publication type:

Article

Turning Peptide Sequences into Ribbon Foldamers by a Straightforward Multicyclization Reaction.

Published in:

Angewandte Chemie, 2015, v. 127, n. 47, p. 14172, doi. 10.1002/ange.201506955

By:

Martin, Vincent;
Legrand, Baptiste;
Vezenkov, Lubomir L.;
Berthet, Mathéo;
Subra, Gilles;
Calmès, Monique;
Bantignies, Jean‐Louis;
Martinez, Jean;
Amblard, Muriel

Publication type:

Article

A Bio-inspired Approach for Chromophore Communication: Ligand-to-Ligand and Host-to-Guest Energy Transfer in Hybrid Crystalline Scaffolds.

Published in:

Angewandte Chemie, 2015, v. 127, n. 46, p. 13843, doi. 10.1002/ange.201507400

By:

Dolgopolova, Ekaterina A.;
Williams, Derek E.;
Greytak, Andrew B.;
Rice, Allison M.;
Smith, Mark D.;
Krause, Jeanette A.;
Shustova, Natalia B.

Publication type:

Article

Design and Synthesis of High-Affinity Dimeric Inhibitors Targeting the Interactions between Gephyrin and Inhibitory Neurotransmitter Receptors.

Published in:

Angewandte Chemie, 2015, v. 127, n. 2, p. 500, doi. 10.1002/ange.201409043

By:

Maric, Hans Michael;
Kasaragod, Vikram Babu;
Haugaard ‐ Kedström, Linda;
Hausrat, Torben Johann;
Kneussel, Matthias;
Schindelin, Hermann;
Strømgaard, Kristian

Publication type:

Article

Misfolding of Luciferase at the Single-Molecule Level.

Published in:

Angewandte Chemie, 2014, v. 126, n. 39, p. 10558, doi. 10.1002/ange.201405566

By:

Mashaghi, Alireza;
Mashaghi, Samaneh;
Tans, Sander J.

Publication type:

Article

The RING Domain of the Scaffold Protein Ste5 Adopts a Molten Globular Character with High Thermal and Chemical Stability.

Published in:

Angewandte Chemie, 2014, v. 126, n. 5, p. 1344, doi. 10.1002/ange.201306702

By:

Walczak, Michal J.;
Samatanga, Brighton;
van Drogen, Frank;
Peter, Matthias;
Jelesarov, Ilian;
Wider, Gerhard

Publication type:

Article

A Disulfide-Constrained Miniprotein with Striking Tumor-Binding Specificity Developed by Ribosome Display.

Published in:

Angewandte Chemie, 2013, v. 125, n. 45, p. 11976, doi. 10.1002/ange.201304603

By:

Zoller, Frederic;
Markert, Annette;
Barthe, Philippe;
Hebling, Ulrike;
Altmann, Annette;
Lindner, Thomas;
Mier, Walter;
Haberkorn, Uwe

Publication type:

Article

A Single Mutation in a Regulatory Protein Produces Evolvable Allosterically Regulated Catalyst of Nonnatural Reaction.

Published in:

Angewandte Chemie, 2013, v. 125, n. 24, p. 6366, doi. 10.1002/ange.201302339

By:

Moroz, Olesia V.;
Moroz, Yurii S.;
Wu, Yibing;
Olsen, Alissa B.;
Cheng, Hong;
Mack, Korrie L.;
McLaughlin, Jaclyn M.;
Raymond, Elizabeth A.;
Zhezherya, Krystyna;
Roder, Heinrich;
Korendovych, Ivan V.

Publication type:

Article

Retraction Note: The scaffold protein disabled 2 (DAB2) and its role in tumor development and progression.

Published in:

2025

By:

Pandya, Disha V.;
Parikh, Rajsi V.;
Gena, Ruhanahmed M.;
Kothari, Nirjari R.;
Parekh, Priyajeet S.;
Chorawala, Mehul R.;
Jani, Maharsh A.;
Yadav, Mayur R.;
Shah, Palak A.

Publication type:

Correction Notice

Root apoplastic barrier mechanism: an adaptive strategy to protect against salt stress.

Published in:

Molecular Biology Reports, 2024, v. 52, n. 1, p. 1, doi. 10.1007/s11033-024-10171-x

By:

Swetha, Ramesh;
Sridhanya, Velayudham Muralidharan;
Varanavasiappan, Shanmugam;
Kumar, Krish K.;
Kokiladevi, Easwaran;
Ravichandran, Veerasamy;
Ramalingam, Jegadeesan;
Sudhakar, Duraialagaraja;
Arul, Loganathan

Publication type:

Article

The scaffold protein disabled 2 (DAB2) and its role in tumor development and progression.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09653-9

By:

Pandya, Disha V.;
Parikh, Rajsi V.;
Gena, Ruhanahmed M.;
Kothari, Nirjari R.;
Parekh, Priyajeet S.;
Chorawala, Mehul R.;
Jani, Maharsh A.;
Yadav, Mayur R.;
Shah, Palak A.

Publication type:

Article

Iron loading site on the Fe-S cluster assembly scaffold protein is distinct from the active site.

Published in:

BioMetals, 2015, v. 28, n. 3, p. 567, doi. 10.1007/s10534-015-9846-8

By:

Rodrigues, Andria;
Kandegedara, Ashoka;
Rotondo, John;
Dancis, Andrew;
Stemmler, Timothy

Publication type:

Article

MALT1 as a promising target to treat lymphoma and other diseases related to MALT1 anomalies.

Published in:

Medicinal Research Reviews, 2021, v. 41, n. 4, p. 2388, doi. 10.1002/med.21799

By:

Liang, Xuewu;
Cao, YiChun;
Li, Chunpu;
Yu, Haolan;
Yang, Chenghua;
Liu, Hong

Publication type:

Article

Natural structural diversity within a conserved cyclic peptide scaffold.

Published in:

Amino Acids, 2017, v. 49, n. 1, p. 103, doi. 10.1007/s00726-016-2333-x

By:

Elliott, Alysha;
Franke, Bastian;
Armstrong, David;
Craik, David;
Mylne, Joshua;
Rosengren, K.

Publication type:

Article

The 1,2,4-triazole as a scaffold for the design of ghrelin receptor ligands: development of JMV 2959, a potent antagonist.

Published in:

Amino Acids, 2013, v. 44, n. 2, p. 301, doi. 10.1007/s00726-012-1355-2

By:

Moulin, Aline;
Brunel, Luc;
Boeglin, Damien;
Demange, Luc;
Ryan, Johanne;
M'Kadmi, Céline;
Denoyelle, Séverine;
Martinez, Jean;
Fehrentz, Jean-Alain

Publication type:

Article

Non-canonical interactions of porphyrins in porphyrin-containing proteins.

Published in:

Amino Acids, 2012, v. 43, n. 4, p. 1535, doi. 10.1007/s00726-012-1228-8

By:

Stojanović, Srđan;
Isenović, Esma;
Zarić, Božidarka

Publication type:

Article

Order of amino acids in C-terminal cysteine-containing peptide-based chelators influences cellular processing and biodistribution of Tc-labeled recombinant Affibody molecules.

Published in:

Amino Acids, 2012, v. 42, n. 5, p. 1975, doi. 10.1007/s00726-011-0927-x

By:

Altai, Mohamed;
Wållberg, Helena;
Orlova, Anna;
Rosestedt, Maria;
Hosseinimehr, Seyed;
Tolmachev, Vladimir;
Ståhl, Stefan

Publication type:

Article

TG2, a novel extracellular protein with multiple functions.

Published in:

Amino Acids, 2012, v. 42, n. 2/3, p. 939, doi. 10.1007/s00726-011-1008-x

By:

Wang, Zhuo;
Griffin, Martin

Publication type:

Article

Protein scaffold-based molecular probes for cancer molecular imaging.

Published in:

Amino Acids, 2011, v. 41, n. 5, p. 1037, doi. 10.1007/s00726-010-0503-9

By:

Miao, Zheng;
Levi, Jelena;
Cheng, Zhen

Publication type:

Article

Short malonyl dehydro peptides as potential scaffolds for peptidomimetics by an efficient Knoevenagel reaction.

Published in:

Amino Acids, 2010, v. 39, n. 2, p. 461, doi. 10.1007/s00726-009-0462-1

By:

Fioravanti, Stefania;
Gasbarri, Simona;
Morreale, Alberto;
Pellacani, Lucio;
Ramadori, Federico;
Tardella, Paolo A.

Publication type:

Article

Trypanosomatid histones: the building blocks of the epigenetic code of highly divergent eukaryotes.

Published in:

Biochemical Journal, 2025, v. 482, n. 6, p. 325, doi. 10.1042/BCJ20240543

By:

Ocampo, Josefina;
Carena, Santiago;
López, María del Rosario;
Vela, Valentina Sol;
Zambrano Siri, Romina Trinidad;
Balestra, Sofia Antonella;
Alonso, Guillermo Daniel

Publication type:

Article

Noncanonical RGS14 structural determinants control hormone-sensitive NPT2A-mediated phosphate transport.

Published in:

Biochemical Journal, 2025, v. 482, n. 3, p. 135, doi. 10.1042/BCJ20240122

By:

Sneddon, W. Bruce;
Ramineni, Suneela;
Van Doorn, G. Emme;
Hepler, John R.;
Friedman, Peter A.

Publication type:

Article

The WW domain of IQGAP1 binds directly to the p110α catalytic subunit of PI 3-kinase.

Published in:

Biochemical Journal, 2023, v. 480, n. 10, p. 729, doi. 10.1042/BCJ20220493

By:

Bardwell, A. Jane;
Paul, Madhuri;
Yoneda, Kiku C.;
Andrade-Ludeña, María D.;
Nguyen, Oanh T.;
Fruman, David A.;
Bardwell, Lee

Publication type:

Article

Structure of the FERM domain of a neural scaffold protein FRMPD4 implicated in X-linked intellectual disability.

Published in:

Biochemical Journal, 2020, v. 477, n. 23, p. 4623, doi. 10.1042/BCJ20200857

By:

Mengli Wang;
Lin Lin;
Yingdong Shi;
Liping He;
Chao Wang;
Jinwei Zhu

Publication type:

Article

Adenylate control in cAMP signaling: implications for adaptation in signalosomes.

Published in:

Biochemical Journal, 2020, v. 477, n. 16, p. 2981, doi. 10.1042/BCJ20200435

By:

Tulsian, Nikhil K.;
Ghode, Abhijeet;
Anand, Ganesh S.

Publication type:

Article

Molecular dynamics simulations and biochemical characterization of Pf14-3-3 and PfCDPK1 interaction towards its role in growth of human malaria parasite.

Published in:

Biochemical Journal, 2020, v. 477, n. 12, p. 2153, doi. 10.1042/BCJ20200145

By:

Jain, Ravi;
Dey, Pinki;
Gupta, Sakshi;
Pati, Soumya;
Bhattacherjee, Arnab;
Munde, Manoj;
Singh, Shailja

Publication type:

Article

Assembling draft genomes using contiBAIT.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2737, doi. 10.1093/bioinformatics/btx281

By:

O'Neill, Kieran;
Karsan, Aly;
Gottlieb, Mike;
Lansdorp, Peter M.;
Hills, Mark;
Borkowski, Matthew

Publication type:

Article

PEP_scaffolder: using (homologous) proteins to scaffold genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 20, p. 3193, doi. 10.1093/bioinformatics/btw378

By:

Bai-Han Zhu;
Ying-Nan Song;
Wei Xue;
Gui-Cai Xu;
Jun Xiao;
Ming-Yuan Sun;
Xiao-Wen Sun;
Jiong-Tang Li

Publication type:

Article

MEDUSA: a multi-draft based scaffolder.

Published in:

2015

By:

Bosi, Emanuele;
Donati, Beatrice;
Galardini, Marco;
Brunetti, Sara;
Sagot, Marie-France;
Lió, Pietro;
Crescenzi, Pierluigi;
Fani, Renato;
Fondi, Marco

Publication type:

Product Review

Exploring protein domain organization by recognition of secondary structure packing interfaces.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2440, doi. 10.1093/bioinformatics/btu327

By:

Deng, Lizong;
Wu, Aiping;
Dai, Wentao;
Song, Tingrui;
Cui, Ya;
Jiang, Taijiao

Publication type:

Article

Lep-MAP: fast and accurate linkage map construction for large SNP datasets.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3128, doi. 10.1093/bioinformatics/btt563

By:

Rastas, Pasi;
Paulin, Lars;
Hanski, Ilkka;
Lehtonen, Rainer;
Auvinen, Petri

Publication type:

Article

Scaffolding low quality genomes using orthologous protein sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 160

By:

Li, Yang I.;
Copley, Richard R.

Publication type:

Article

Spatiotemporal Control Over Protein Release from Artificial Cells via a Light‐Activatable Protease.

Published in:

Advanced Biology, 2025, v. 9, n. 5, p. 1, doi. 10.1002/adbi.202400353

By:

Hazegh Nikroo, Arjan;
Altenburg, Wiggert J.;
van Veldhuisen, Thijs W.;
Brunsveld, Luc;
van Hest, Jan C. M.

Publication type:

Article

Pitstop‐2 Upsets The Integrity of Nuclear Pore Complexes (NPCs) by Interaction with β‐Propeller Folds of Npc Scaffold Proteins.

Published in:

Advanced Biology, 2024, v. 8, n. 3, p. 1, doi. 10.1002/adbi.202300360

By:

Stefanello, Sílvio Terra;
Mizdal, Caren Rigon;
Shahin, Victor

Publication type:

Article

Nipah virus W protein harnesses nuclear 14-3-3 to inhibit NF-κB-induced proinflammatory response.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02797-5

By:

Enchéry, François;
Dumont, Claire;
Iampietro, Mathieu;
Pelissier, Rodolphe;
Aurine, Noémie;
Bloyet, Louis-Marie;
Carbonnelle, Caroline;
Mathieu, Cyrille;
Journo, Chloé;
Gerlier, Denis;
Horvat, Branka

Publication type:

Article

Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02766-y

By:

Hallinan, Jazmine P.;
Doyle, Lindsey A.;
Shen, Betty W.;
Gewe, Mesfin M.;
Takushi, Brittany;
Kennedy, Madison A.;
Friend, Della;
Roberts, James M.;
Bradley, Philip;
Stoddard, Barry L.

Publication type:

Article

WDR62 is required for centriole duplication in spermatogenesis and manchette removal in spermiogenesis.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02171-5

By:

Ho, Uda Y.;
Feng, Chun-Wei Allen;
Yeap, Yvonne Y.;
Bain, Amanda L.;
Wei, Zhe;
Shohayeb, Belal;
Reichelt, Melissa E.;
Homer, Hayden;
Khanna, Kum Kum;
Bowles, Josephine;
Ng, Dominic C. H.

Publication type:

Article