Works matching AU Olshen, Adam B

Results: 47

Copy number and gene expression differences between African American and Caucasian American prostate cancer.

Published in:

Journal of Translational Medicine, 2010, v. 8, p. 70, doi. 10.1186/1479-5876-8-70

By:

Rose, Amy E.;
Satagopan, Jaya M.;
Oddoux, Carole;
Qin Zhou;
Ruliang Xu;
Olshen, Adam B.;
Yu, Jessie Z.;
Dash, Atreya;
Jean-Gilles, Jerome;
Reuter, Victor;
Gerald, William L.;
Peng Lee;
Osman, Iman

Publication type:

Article

Genome-wide DNA methylation is predictive of outcome in juvenile myelomonocytic leukemia.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02178-9

By:

Gelston, Laura C.;
Akutagawa, Jon;
Stieglitz, Elliot;
Braun, Benjamin S.;
Loh, Mignon L.;
Chehab, Farid F.;
Olshen, Adam B.;
Mazor, Tali;
Costello, Joseph F.;
Geng, Huimin;
Lipka, Daniel B.;
Plass, Christoph;
Flotho, Christian

Publication type:

Article

Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering.

Published in:

Genome Medicine, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13073-020-00804-8

By:

Arora, Arshi;
Olshen, Adam B.;
Seshan, Venkatraman E.;
Shen, Ronglai

Publication type:

Article

Perturbations in inflammatory pathways are associated with shortness of breath profiles in oncology patients receiving chemotherapy.

Published in:

Supportive Care in Cancer, 2024, v. 32, n. 4, p. 1, doi. 10.1007/s00520-024-08446-x

By:

Shin, Joosun;
Miaskowski, Christine;
Wong, Melisa L.;
Yates, Patsy;
Olshen, Adam B.;
Roy, Ritu;
Dokiparthi, Vasuda;
Cooper, Bruce;
Paul, Steven;
Conley, Yvette P.;
Levine, Jon D.;
Hammer, Marilyn J.;
Kober, Kord

Publication type:

Article

COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations.

Published in:

Journal of Clinical & Translational Science, 2022, v. 6, n. 1, p. 1, doi. 10.1017/cts.2022.389

By:

Olshen, Adam B.;
Garcia, Ariadna;
Kapphahn, Kristopher I.;
Weng, Yingjie;
Vargo, Jason;
Pugliese, John A.;
Crow, David;
Wesson, Paul D.;
Rutherford, George W.;
Gonen, Mithat;
Desai, Manisha

Publication type:

Article

Novel Aggregate Deletion/Substitution/Addition Learning Algorithms for Recursive Partitioning.

Published in:

Journal of Computational & Graphical Statistics, 2018, v. 27, n. 1, p. 146, doi. 10.1080/10618600.2017.1319842

By:

Olshen, Adam B.;
Strawderman, Robert L.;
Ryslik, Gregory;
Lostritto, Karen;
Arnold, Alice M.;
Molinaro, Annette M.

Publication type:

Article

Constitutive Gene Expression Predisposes Morphogen-Mediated Cell Fate Responses of NT2/D1 and 27X-1 Human Embryonal Carcinoma Cells.

Published in:

Stem Cells, 2007, v. 25, n. 3, p. 771, doi. 10.1634/stemcells.2006-0271

By:

Chadalavada, Rajendrakumar S. V.;
Korkola, James E.;
Houldsworth, Jane;
Olshen, Adam B.;
Bosl, George J.;
Studer, Lorenz;
Chaganti, R. S. K.

Publication type:

Article

CLONAL EVOLUTION OF GLIOMAS IS ENCODED IN THE EVOLUTIONARY DYNAMICS OF DNA METHYLATION.

Published in:

Neuro-Oncology, 2014, v. 16, n. suppl_3, p. iii51, doi. 10.1093/neuonc/nou209.38

By:

Costello, Joseph F.;
Mazor, Tali;
Pankov, Alex;
Johnson, Brett E.;
Hong, Chibo;
Bell, Robert J.A.;
Smirnov, Ivan V.;
Reis, Gerald F.;
Phillips, Joanna J.;
Barnes, Michael;
Bollen, Andrew W.;
Taylor, Barry S.;
Molinaro, Annette M.;
Olshen, Adam B.;
Song, Jun S.;
Berger, Mitchel S.;
Chang, Susan M.

Publication type:

Article

A colorectal cancer classification system that associates cellular phenotype and responses to therapy.

Published in:

Nature Medicine, 2013, v. 19, n. 5, p. 619, doi. 10.1038/nm.3175

By:

Sadanandam, Anguraj;
Lyssiotis, Costas A;
Homicsko, Krisztian;
Collisson, Eric A;
Gibb, William J;
Wullschleger, Stephan;
Ostos, Liliane C Gonzalez;
Lannon, William A;
Grotzinger, Carsten;
Del Rio, Maguy;
Lhermitte, Benoit;
Olshen, Adam B;
Wiedenmann, Bertram;
Cantley, Lewis C;
Gray, Joe W;
Hanahan, Douglas

Publication type:

Article

Subtypes of pancreatic ductal adenocarcinoma and their differing responses to therapy.

Published in:

Nature Medicine, 2011, v. 17, n. 4, p. 500, doi. 10.1038/nm.2344

By:

Collisson, Eric A.;
Sadanandam, Anguraj;
Olson, Peter;
Gibb, William J.;
Truitt, Morgan;
Gu, Shenda;
Cooc, Janine;
Weinkle, Jennifer;
Kim, Grace E.;
Jakkula, Lakshmi;
Feiler, Heidi S.;
Ko, Andrew H.;
Olshen, Adam B.;
Danenberg, Kathleen L.;
Tempero, Margaret A.;
Spellman, Paul T.;
Hanahan, Douglas;
Gray, Joe W.

Publication type:

Article

Gastrointestinal Symptom Cluster is Associated With Epigenetic Regulation of Lymphotoxin Beta in Oncology Patients Receiving Chemotherapy.

Published in:

Biological Research for Nursing, 2023, v. 25, n. 1, p. 51, doi. 10.1177/10998004221115863

By:

Harris, Carolyn S.;
Miaskowski, Christine A.;
Conley, Yvette P.;
Hammer, Marilyn J.;
Dhruva, Anand A.;
Levine, Jon D.;
Olshen, Adam B.;
Kober, Kord M.

Publication type:

Article

Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping.

Published in:

BMC Genetics, 2008, v. 9, p. 1, doi. 10.1186/1471-2156-9-14

By:

Olshen, Adam B.;
Gold, Bert;
Lohmueller, Kirk E.;
Struewing, Jeffery P.;
Satagopan, Jaya;
Stefanov, Stefan A.;
Eskin, Eleazar;
Kirchhoff, Tomas;
Lautenberger, James A.;
Klein, Robert J.;
Friedman, Eitan;
Norton, Larry;
Ellis, Nathan A.;
Viale, Agnes;
Lee, Catherine S.;
Borgen, Patrick I.;
Clark, Andrew G.;
Offit, Kenneth;
Boyd, Jeff

Publication type:

Article

Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?

Published in:

BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05170-x

By:

Olshen, Adam B.;
Segal, Mark R.

Publication type:

Article

Assessing gene-level translational control from ribosome profiling.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 2995, doi. 10.1093/bioinformatics/btt533

By:

Olshen, Adam B.;
Hsieh, Andrew C.;
Stumpf, Craig R.;
Olshen, Richard A.;
Ruggero, Davide;
Taylor, Barry S.

Publication type:

Article

Parent-specific copy number in paired tumor–normal studies using circular binary segmentation.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2038, doi. 10.1093/bioinformatics/btr329

By:

Olshen, Adam B.;
Bengtsson, Henrik;
Neuvial, Pierre;
Spellman, Paul T.;
Olshen, Richard A.;
Seshan, Venkatraman E.

Publication type:

Article

Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1698, doi. 10.1093/bioinformatics/btr267

By:

Ostrovnaya, Irina;
Seshan, Venkatraman E.;
Olshen, Adam B.;
Begg, Colin B.

Publication type:

Article

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.

Published in:

2010

By:

Shen, Ronglai;
Olshen, Adam B.;
Ladanyi, Marc

Publication type:

Correction Notice

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2906, doi. 10.1093/bioinformatics/btp543

By:

Shen, Ronglai;
Olshen, Adam B.;
Ladanyi, Marc

Publication type:

Article

Deriving quantitative conclusions from microarray expression data.

Published in:

Bioinformatics, 2002, v. 18, n. 7, p. 961, doi. 10.1093/bioinformatics/18.7.961

By:

Olshen, Adam B.;
Jain, Ajay N.

Publication type:

Article

Therapeutic implications of transcriptomics in head and neck cancer patient-derived xenografts.

Published in:

PLoS ONE, 2023, v. 18, n. 3, p. 1, doi. 10.1371/journal.pone.0282177

By:

Lee, Rex H.;
Roy, Ritu;
Li, Hua;
Hechmer, Aaron;
Zhu, Tian Ran;
Izgutdina, Adila;
Olshen, Adam B.;
Johnson, Daniel E.;
Grandis, Jennifer R.

Publication type:

Article

Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.

Published in:

Nature Biotechnology, 2016, v. 34, n. 2, p. 155, doi. 10.1038/nbt.3391

By:

Chang, Matthew T;
Asthana, Saurabh;
Gao, Sizhi Paul;
Lee, Byron H;
Chapman, Jocelyn S;
Kandoth, Cyriac;
Gao, JianJiong;
Socci, Nicholas D;
Solit, David B;
Olshen, Adam B;
Schultz, Nikolaus;
Taylor, Barry S

Publication type:

Article

A classification model for distinguishing copynumber variants from cancer-related alterations.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 297, doi. 10.1186/1471-2105-11-297

By:

Ostrovnaya, Irina;
Nanjangud, Gouri;
Olshen, Adam B.

Publication type:

Article

A metastasis or a second independent cancer? Evaluating the clonal origin of tumors using array copy number data.

Published in:

Statistics in Medicine, 2010, v. 29, n. 15, p. 1608, doi. 10.1002/sim.3866

By:

Ostrovnaya, Irina;
Olshen, Adam B.;
Seshan, Venkatraman E.;
Orlow, Irene;
Albertson, Donna G.;
Begg, Colin B.

Publication type:

Article

Transcriptional program of bone morphogenetic protein-2-induced epithelial and smooth muscle differentiation of pluripotent human embryonal carcinoma cells.

Published in:

Functional & Integrative Genomics, 2005, v. 5, n. 2, p. 59, doi. 10.1007/s10142-005-0132-7

By:

Chadalavada, Rajendrakumar S. V.;
Houldsworth, Jane;
Olshen, Adam B.;
Bosl, George J.;
Studer, Lorenz;
Chaganti, R. S. K.

Publication type:

Article

Genes that mediate breast cancer metastasis to lung.

Published in:

Nature, 2005, v. 436, n. 7050, p. 518, doi. 10.1038/nature03799

By:

Minn, Andy J.;
Gupta, Gaorav P.;
Siegel, Peter M.;
Bos, Paula D.;
Weiping Shu;
Giri, Dilip D.;
Viale, Agnes;
Olshen, Adam B.;
Gerald, William L.;
Massagué, Joan

Publication type:

Article

Circular binary segmentation for the analysis of array‐based DNA copy number data.

Published in:

Biostatistics, 2004, v. 5, n. 4, p. 557, doi. 10.1093/biostatistics/kxh008

By:

Adam B. Olshen;
E. S. Venkatraman

Publication type:

Article

Perturbations in common and distinct inflammatory pathways associated with morning and evening fatigue in outpatients receiving chemotherapy.

Published in:

Cancer Medicine, 2023, v. 12, n. 6, p. 7369, doi. 10.1002/cam4.5435

By:

Kober, Kord M.;
Harris, Carolyn;
Conley, Yvette P.;
Dhruva, Anand;
Dokiparthi, Vasuda;
Hammer, Marilyn J.;
Levine, Jon D.;
Oppegaard, Kate;
Paul, Steven;
Shin, Joosun;
Sucher, Anatol;
Wright, Fay;
Yuen, Brian;
Olshen, Adam B.;
Miaskowski, Christine

Publication type:

Article

Topographic enhancement mapping of the cancer-associated breast stroma using breast MRI.

Published in:

Integrative Biology, 2011, v. 3, n. 4, p. 490, doi. 10.1039/c0ib00089b

By:

Nabavizadeh, Nima;
Klifa, Catherine;
Newitt, David;
Lu, Ying;
Chen, Yunn-Yi;
Hsu, Howard;
Fisher, Clark;
Tokayasu, Taku;
Olshen, Adam B.;
Spellman, Paul;
Gray, Joe W.;
Hylton, Nola;
Park, Catherine C.

Publication type:

Article

Camouflaged Deconvolution With Application to Blood Curve Modeling in FDG PET Studies.

Published in:

Journal of the American Statistical Association, 1997, v. 92, n. 440, p. 1293, doi. 10.1080/01621459.1997.10473650

By:

Olshen, Adam B.;
O'Sullivan, Finbarr

Publication type:

Article

Development and Validation of a Gene-Based Model for Outcome Prediction in Germ Cell Tumors Using a Combined Genomic and Expression Profiling Approach.

Published in:

PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0142846

By:

Korkola, James E.;
Heck, Sandy;
Olshen, Adam B.;
Feldman, Darren R.;
Reuter, Victor E.;
Houldsworth, Jane;
Bosl, George J.;
Chaganti, R. S. K.

Publication type:

Article

Changes in Abundance of Oral Microbiota Associated with Oral Cancer.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0098741

By:

Schmidt, Brian L.;
Kuczynski, Justin;
Bhattacharya, Aditi;
Huey, Bing;
Corby, Patricia M.;
Queiroz, Erica L. S.;
Nightingale, Kira;
Kerr, A. Ross;
DeLacure, Mark D.;
Veeramachaneni, Ratna;
Olshen, Adam B.;
Albertson, Donna G.

Publication type:

Article

Integrative Subtype Discovery in Glioblastoma Using iCluster.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035236

By:

Ronglai Shen;
Qianxing Mo;
Schultz, Nikolaus;
Seshan, Venkatraman E.;
Olshen, Adam B.;
Huse, Jason;
Ladanyi, Marc;
Sander, Chris

Publication type:

Article

Genetic Analysis of the Early Natural History of Epithelial Ovarian Carcinoma.

Published in:

PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0010358

By:

Pothuri, Bhavana;
Leitao, Mario M.;
Levine, Douglas A.;
Viale, Agnès;
Olshen, Adam B.;
Arroyo, Crispinita;
Bogomolniy, Faina;
Olvera, Narciso;
Lin, Oscar;
Soslow, Robert A.;
Robson, Mark E.;
Offit, Kenneth;
Barakat, Richard R.;
Boyd, Jeff

Publication type:

Article

Tissue microarray immunohistochemical expression of estrogen, progesterone, and androgen receptors in uterine leiomyomata and leiomyosarcoma.

Published in:

Cancer (0008543X), 2004, v. 101, n. 6, p. 1455, doi. 10.1002/cncr.20521

By:

Mario M. Leitao;
Robert A. Soslow;
Daisuke Nonaka;
Adam B. Olshen;
Carol Aghajanian;
Paul Sabbatini;
Jakob Dupont;
Martee Hensley;
Yukio Sonoda;
Richard R. Barakat;
Sibyl Anderson

Publication type:

Article

In utero and early-life exposure to thirdhand smoke causes profound changes to the immune system.

Published in:

Clinical Science, 2021, v. 135, n. 8, p. 1053, doi. 10.1042/CS20201498

By:

Snijders, Antoine M.;
Mi Zhou;
Whitehead, Todd P.;
Fitch, Briana;
Pandey, Priyatama;
Hechmer, Aaron;
Huang, Abel;
Schick, Suzaynn F.;
de Smith, Adam J.;
Olshen, Adam B.;
Metayer, Catherine;
Jian-Hua Mao;
Wiemels, Joseph L.;
Kogan, Scott C.

Publication type:

Article

Pedigree analysis package vs. MIXD: Fitting the mixed model on a large pedigree.

Published in:

Genetic Epidemiology, 1996, v. 13, n. 1, p. 91, doi. 10.1002/(SICI)1098-2272(1996)13:1<91::AID-GEPI8>3.0.CO;2-9

By:

Olshen, Adam B.;
Wijsman, Ellen M.

Publication type:

Article

Gene expression-based classification of nonseminomatous male germ cell tumors.

Published in:

Oncogene, 2005, v. 24, n. 32, p. 5101, doi. 10.1038/sj.onc.1208694

By:

Korkola, James E.;
Houldsworth, Jane;
Dobrzynski, Debbie;
Olshen, Adam B.;
Reuter, Victor E.;
Bosl, George J.;
Chaganti, R. S. K.

Publication type:

Article

Neurodegenerative disease pathways are perturbed in patients with cancer who self‐report cognitive changes and anxiety: A pathway impact analysis.

Published in:

Cancer (0008543X), 2024, v. 130, n. 16, p. 2834, doi. 10.1002/cncr.35336

By:

Oppegaard, Kate R.;
Mayo, Samantha J.;
Armstrong, Terri S.;
Dokiparthi, Vasuda;
Melisko, Michelle;
Levine, Jon D.;
Olshen, Adam B.;
Anguera, Joaquin A.;
Roy, Ritu;
Paul, Steven;
Cooper, Bruce;
Conley, Yvette P.;
Hammer, Marilyn J.;
Miaskowski, Christine;
Kober, Kord M.

Publication type:

Article

Disease burden and conditioning regimens in ASCT1221, a randomized phase II trial in children with juvenile myelomonocytic leukemia: A Children's Oncology Group study.

Published in:

2018

By:

Dvorak, Christopher C.;
Satwani, Prakash;
Stieglitz, Elliot;
Cairo, Mitchell S.;
Dang, Ha;
Pei, Qinglin;
Gao, Yun;
Wall, Donna;
Mazor, Tali;
Olshen, Adam B.;
Parker, Joel S.;
Kahwash, Samir;
Hirsch, Betsy;
Raimondi, Susana;
Patel, Neil;
Skeens, Micah;
Cooper, Todd;
Mehta, Parinda A.;
Grupp, Stephan A.;
Loh, Mignon L.

Publication type:

journal article

The genomic landscape of juvenile myelomonocytic leukemia.

Published in:

Nature Genetics, 2015, v. 47, n. 11, p. 1326, doi. 10.1038/ng.3400

By:

Toretsky, Jeffrey A;
Olshen, Adam B;
Getz, Gad;
Gruber, Tanja A;
Golub, Todd R;
Stegmaier, Kimberly;
Loh, Mignon L;
Stieglitz, Elliot;
Chang, Tiffany Y;
Gelston, Laura C;
Esquivel, Emilio;
Yu, Ariel;
Archambeault, Sophie L;
Beckman, Kyle;
Cooper, Todd;
Dahl, Gary V;
Emanuel, Peter D;
Liu, Y Lucy;
Fluchel, Mark N;
Goyal, Rakesh K

Publication type:

Article

Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway.

Published in:

Nature Genetics, 2015, v. 47, n. 10, p. 1194, doi. 10.1038/ng.3382

By:

Garrido, Maria;
Botton, Thomas;
Talevich, Eric;
Yeh, Iwei;
Wang, Nicholas J;
Kakavand, Hojabr;
Mann, Graham J;
Thompson, John F;
Olshen, Adam B;
Gagnon, Alexander;
Gray, Joe W;
Scolyer, Richard A;
Murali, Rajmohan;
Bastian, Boris C;
Sanborn, J Zachary;
Chung, Jongsuk;
Huh, Nam;
Wiesner, Thomas;
Shain, A Hunter;
Roy, Ritu

Publication type:

Article

BARD1 Participates with BRCA1 in Homology-Directed Repair of Chromosome Breaks.

Published in:

Molecular & Cellular Biology, 2003, v. 23, n. 21, p. 7926, doi. 10.1128/MCB.23.21.7926-7936.2003

By:

Westermark, Ulrica K.;
Reyngold, Marsha;
Olshen, Adam B.;
Baer, Richard;
Jasin, Maria;
Moynahan, Mary Ellen

Publication type:

Article

Pathway activation in large B-cell non-Hodgkin lymphoma cell lines by doxorubicin reveals prognostic markers of in vivo response.

Published in:

Leukemia & Lymphoma, 2008, v. 49, n. 11, p. 2170, doi. 10.1080/10428190802428369

By:

Houldsworth, Jane;
Petlakh, Marina;
Olshen, Adam B.;
Chaganti, R. S. K.

Publication type:

Article

β1-Integrin via NF-κB signaling is essential for acquisition of invasiveness in a model of radiation treated in situ breast cancer.

Published in:

2013

By:

Nam, Jin-Min;
Ahmed, Kazi M;
Costes, Sylvain;
Zhang, Hui;
Onodera, Yasuhito;
Olshen, Adam B;
Hatanaka, Kanako C;
Kinoshita, Rumiko;
Ishikawa, Masayori;
Sabe, Hisataka;
Shirato, Hiroki;
Park, Catherine C

Publication type:

journal article

Insights into extramedullary tumour cell growth revealed by expression profiling of human plasmacytomas and multiple myeloma.

Published in:

British Journal of Haematology, 2003, v. 122, n. 5, p. 728, doi. 10.1046/j.1365-2141.2003.04481.x

By:

Hedvat, Cyrus V.;
Comenzo, Raymond L.;
Teruya-Feldsted, Julie;
Olshen, Adam B.;
Ely, Scott A.;
Osman, Keren;
Yana Zhang, Keren;
Kalakonda, Nagesh;
Nimer, Stephen D.

Publication type:

Article

Glucocorticoids paradoxically facilitate steroid resistance in T cell acute lymphoblastic leukemias and thymocytes.

Published in:

2020

By:

Meyer, Lauren K.;
Huang, Benjamin J.;
Delgado-Martin, Cristina;
Roy, Ritu P.;
Hechmer, Aaron;
Wandler, Anica M.;
Vincent, Tiffaney L.;
Fortina, Paolo;
Olshen, Adam B.;
Wood, Brent L.;
Horton, Terzah M.;
Shannon, Kevin M.;
Teachey, David T.;
Hermiston, Michelle L.

Publication type:

journal article

Differential exoprotease activities confer tumor-specific serum peptidome patterns.

Published in:

2006

By:

Villanueva, Josep;
Shaffer, David R.;
Philip, John;
Chaparro, Carlos A.;
Erdjument-Bromage, Hediye;
Olshen, Adam B.;
Fleisher, Martin;
Lilja, Hans;
Brogi, Edi;
Boyd, Jeff;
Sanchez-Carbayo, Marta;
Holland, Eric C.;
Cordon-Cardo, Carlos;
Scher, Howard I.;
Tempst, Paul

Publication type:

journal article