Prognostic Bone Metastasis-Associated Immune-Related Genes Regulated by Transcription Factors in Mesothelioma.

Hao, Zhiquan; Wang, Siqiao; Zheng, Zixuan; Li, Jiehan; Fu, Wanting; Han, Donglin; Huang, Yinrou; Lin, Qing; Xian, Shuyuan; Yan, Penghui; Li, Man; Lin, Ruoyi; Meng, Tong; Zhang, Jie; Huang, Zongqiang

Mesothelioma (MESO) is a mesothelial originate neoplasm with high morbidity and mortality. Despite advancement in technology, early diagnosis still lacks effectivity and is full of pitfalls. Approaches of cancer diagnosis and therapy utilizing immune biomarkers and transcription factors (TFs) have attracted more and more attention. But the molecular mechanism of these features in MESO bone metastasis has not been thoroughly studied. Utilizing high-throughput genome sequencing data and lists of specific gene subsets, we performed several data mining algorithm. Single-sample Gene Set Enrichment Analysis (ssGSEA) was applied to identify downstream immune cells. Potential pathways involved in MESO bone metastasis were identified using Gene Oncology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, Gene Set Variation Analysis (GSVA), Gene Set Enrichment Analysis (GSEA), and Cox regression analysis. Ultimately, a model to help early diagnosis and to predict prognosis was constructed based on differentially expressed immune-related genes between bone metastatic and nonmetastatic MESO groups. In conclusion, immune-related gene SDC2, regulated by TFs TCF7L1 and POLR3D, had an important role on immune cell function and infiltration, providing novel biomarkers and therapeutic targets for metastatic MESO.

MESOTHELIOMA; SEQUENCE analysis; IMMUNE system; EARLY detection of cancer; REGRESSION analysis; GENE expression; BONE metastasis; GENOMES; TRANSCRIPTION factors; TUMOR markers; DATA mining; ALGORITHMS

BioMed Research International, 2022, p1

2314-6133

Academic Journal

10.1155/2022/9940566