Works matching DE "RNA world hypothesis"

Results: 70

Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 9, p. 679, doi. 10.1038/nsmb.3073

By:

Jones, Christopher P;
Ferré-D'Amaré, Adrian R

Publication type:

Article

The RNA exosome promotes transcription termination of backtracked RNA polymerase II.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 10, p. 919, doi. 10.1038/nsmb.2893

By:

Lemay, Jean-François;
Larochelle, Marc;
Marguerat, Samuel;
Atkinson, Sophie;
Bähler, Jürg;
Bachand, François

Publication type:

Article

Profiling of Ribose Methylations in RNA by High-Throughput Sequencing.

Published in:

Angewandte Chemie, 2015, v. 127, n. 2, p. 461, doi. 10.1002/ange.201408362

By:

Birkedal, Ulf;
Christensen ‐ Dalsgaard, Mikkel;
Krogh, Nicolai;
Sabarinathan, Radhakrishnan;
Gorodkin, Jan;
Nielsen, Henrik

Publication type:

Article

Ligand-Detected Relaxation Dispersion NMR Spectroscopy: Dynamics of preQ<sub>1</sub>-RNA Binding.

Published in:

Angewandte Chemie, 2015, v. 127, n. 2, p. 570, doi. 10.1002/ange.201409779

By:

Moschen, Thomas;
Wunderlich, Christoph Hermann;
Spitzer, Romana;
Levic, Jasmin;
Micura, Ronald;
Tollinger, Martin;
Kreutz, Christoph

Publication type:

Article

meRanTK: methylated RNA analysis ToolKit.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 782, doi. 10.1093/bioinformatics/btv647

By:

Rieder, Dietmar;
Amort, Thomas;
Kugler, Elisabeth;
Lusser, Alexandra;
Trajanoski, Zlatko

Publication type:

Article

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 593, doi. 10.1093/bioinformatics/btu647

By:

Han, Bo W.;
Wang, Wei;
Zamore, Phillip D.;
Weng, Zhiping

Publication type:

Article

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 25, doi. 10.1093/bioinformatics/btu608

By:

Li, Liping;
Chen, Enguo;
Yang, Chun;
Zhu, Jun;
Jayaraman, Pushkala;
De Pons, Jeffrey;
Kaczorowski, Catherine C.;
Jacob, Howard J.;
Greene, Andrew S.;
Hodges, Matthew R.;
Cowley, Allen W.;
Liang, Mingyu;
Xu, Haiming;
Liu, Pengyuan;
Lu, Yan

Publication type:

Article

The RNA World: molecular cooperation at the origins of life.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 1, p. 7, doi. 10.1038/nrg3841

By:

Higgs, Paul G.;
Lehman, Niles

Publication type:

Article

RNA: New CLIP pipeline improves interactome discovery.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 1, p. 2, doi. 10.1038/nrg3877

By:

Koch, Linda

Publication type:

Article

In vitro evaluation of optimized liposomes for delivery of small interfering RNA.

Published in:

Journal of Liposome Research, 2014, v. 24, n. 4, p. 270, doi. 10.3109/08982104.2014.907306

By:

Yang, Tianzhi;
Bantegui, Tracy;
Pike, Kaitlynn;
Bloom, Raymond;
Phipps, Roger;
Bai, Shuhua

Publication type:

Article

G-quadruplexes formation in the 5’UTRs of mRNAs associated with colorectal cancer pathways.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0208363

By:

Jodoin, Rachel;
Perreault, Jean-Pierre

Publication type:

Article

Micro RNA 26a prolongs skin allograft survival and promotes regulatory T cell expansion in mice.

Published in:

Transplant International, 2015, v. 28, n. 10, p. 1143, doi. 10.1111/tri.12590

By:

Xie, Feng;
Chai, Jiake;
Zhang, Zhengwen;
Hu, Quan;
Ma, Tengxiao

Publication type:

Article

In the Beginning was a Mutualism - On the Origin of Translation.

Published in:

Origins of Life & Evolution of the Biosphere, 2018, v. 48, n. 2, p. 223, doi. 10.1007/s11084-018-9557-6

By:

Vitas, Marko;
Dobovišek, Andrej

Publication type:

Article

The Juxtaposition of Ribose Hydroxyl Groups: The Root of Biological Catalysis and the RNA World?

Published in:

Origins of Life & Evolution of the Biosphere, 2015, v. 45, n. 1/2, p. 15, doi. 10.1007/s11084-015-9403-z

By:

Bernhardt, Harold

Publication type:

Article

Template Directed Replication Supports the Maintenance of the Metabolically Coupled Replicator System.

Published in:

Origins of Life & Evolution of the Biosphere, 2015, v. 45, n. 1/2, p. 105, doi. 10.1007/s11084-015-9409-6

By:

Könnyű, Balázs;
Czárán, Tamás

Publication type:

Article

Micro RNA-410 functions as a tumor suppressor by targeting angiotensin II type 1 receptor in pancreatic cancer.

Published in:

IUBMB Life, 2015, v. 67, n. 1, p. 42, doi. 10.1002/iub.1342

By:

Guo, Rende;
Gu, Jianhua;
Zhang, Zhibin;
Wang, Yi;
Gu, Chuan

Publication type:

Article

RNA Aptamer That Specifically Binds to Mycolactone and Serves as a Diagnostic Tool for Diagnosis of Buruli Ulcer.

Published in:

PLoS Neglected Tropical Diseases, 2016, v. 10, n. 10, p. 1, doi. 10.1371/journal.pntd.0004950

By:

Sakyi, Samuel A.;
Aboagye, Samuel Yaw;
Otchere, Isaac Darko;
Liao, Albert M.;
Caltagirone, Thomas G.;
Yeboah-Manu, Dorothy

Publication type:

Article

Viral blips during suppressive antiretroviral treatment are associated with high baseline HIV-1 RNA levels.

Published in:

2016

By:

Sörstedt, Erik;
Nilsson, Staffan;
Blaxhult, Anders;
Gisslén, Magnus;
Flamholc, Leo;
Sönnerborg, Anders;
Yilmaz, Aylin

Publication type:

journal article

Evolution of RLSB, a nuclear-encoded S1 domain RNA binding protein associated with post-transcriptional regulation of plastid-encoded rbcL mRNA in vascular plants.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0713-1

By:

Yerramsetty, Pradeep;
Stata, Matt;
Siford, Rebecca;
Sage, Tammy L.;
Sage, Rowan F.;
Gane Ka-Shu Wong;
Albert, Victor A.;
Berry, James O.

Publication type:

Article

Biochemical and structural features of extracellular vesicle-binding RNA aptamers.

Published in:

Biomedical Reports, 2017, v. 6, n. 6, p. 615, doi. 10.3892/br.2017.899

By:

KAZUYOSHI MURAKAMI;
JING ZHAO;
KAZUHIKO YAMASAKI;
MAKOTO MIYAGISHI

Publication type:

Article

In silico ribozyme evolution in a metabolically coupled RNA population.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0049-6

By:

Könnyu, Balázs;
Szilágyi, András;
Czárán, Tamás;
Jékely, Gáspár;
Poole, Anthony;
Mulkidjanian, Armen

Publication type:

Article

Fractal polymer globules: A new insight on prebiological evolution.

Published in:

Geochemistry International, 2014, v. 52, n. 13, p. 1252, doi. 10.1134/S0016702914130023

By:

Avetisov, V.;
Nechaev, S.

Publication type:

Article

Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0470-y

By:

Comoglio, Federico;
Sievers, Cem;
Paro, Renato

Publication type:

Article

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0492-5

By:

Mbandi, Stanley Kimbung;
Hesse, Uljana;
van Heusden, Peter;
Christoffels, Alan

Publication type:

Article

Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0464-9

By:

Yang Song;
Lei Hua;
Shapiro, Bruce A.;
Wang, Jason T. L.

Publication type:

Article

Circular RNA Expression Profile of Pancreatic Ductal Adenocarcinoma Revealed by Microarray.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2016, v. 40, n. 6, p. 1334, doi. 10.1159/000453186

By:

Li, Haimin;
Hao, Xiaokun;
Wang, Huimin;
Liu, Zhengcai;
He, Yong;
Pu, Meng;
Zhang, Hongtao;
Yu, Hengchao;
Duan, Juanli;
Qu, Shibin

Publication type:

Article

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli.

Published in:

Scientific Reports, 2015, p. 13629, doi. 10.1038/srep13629

By:

Nalpas, Nicolas C.;
Magee, David A.;
Conlon, Kevin M.;
Browne, John A.;
Healy, Claire;
McLoughlin, Kirsten E.;
Rue-Albrecht, Kévin;
McGettigan, Paul A.;
Killick, Kate E.;
Gormley, Eamonn;
Gordon, Stephen V.;
MacHugh, David E.

Publication type:

Article

Large-scale RNA-Seq Transcriptome Analysis of 4043 Cancers and 548 Normal Tissue Controls across 12 TCGA Cancer Types.

Published in:

Scientific Reports, 2015, p. 13413, doi. 10.1038/srep13413

By:

Peng, Li;
Bian, Xiu Wu;
Li, Di Kang;
Xu, Chuan;
Wang, Guang Ming;
Xia, Qing You;
Xiong, Qing

Publication type:

Article

Correlation of circular RNA abundance with proliferation - exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues.

Published in:

Scientific Reports, 2015, p. 8057, doi. 10.1038/srep08057

By:

Bachmayr-Heyda, Anna;
Reiner, Agnes T.;
Auer, Katharina;
Sukhbaatar, Nyamdelger;
Aust, Stefanie;
Bachleitner-Hofmann, Thomas;
Mesteri, Ildiko;
Grunt, Thomas W.;
Zeillinger, Robert;
Pils, Dietmar

Publication type:

Article

Two featured series of rRNA-derived RNA fragments (rRFs) constitute a novel class of small RNAs.

Published in:

PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0176458

By:

Chen, Ze;
Sun, Yu;
Yang, Xiaojun;
Wu, Zhenfeng;
Guo, Kaifei;
Niu, Xiaoran;
Wang, Qingsong;
Ruan, Jishou;
Bu, Wenjun;
Gao, Shan

Publication type:

Article

Identification of suitable reference genes in Taxodium 'Zhongshanshan' under abiotic stresses.

Published in:

Trees: Structure & Function, 2017, v. 31, n. 5, p. 1519, doi. 10.1007/s00468-017-1566-y

By:

Wang, Zhiquan;
Gu, Chunsun;
Xuan, Lei;
Hua, Jianfeng;
Shi, Qin;
Fan, Wencai;
Yin, Yunlong;
Yu, Fangyuan

Publication type:

Article

Fighting against kidney diseases with small interfering RNA: opportunities and challenges.

Published in:

Journal of Translational Medicine, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12967-015-0387-2

By:

Cheng Yang;
Chao Zhang;
Zitong Zhao;
Tongyu Zhu;
Bin Yang

Publication type:

Article

The Kiss Switch Brings Inactive R3C Ligase Ribozyme Back to Life.

Published in:

Biology (2079-7737), 2018, v. 7, n. 1, p. 7, doi. 10.3390/biology7010007

By:

Tanizawa, Kana;
Uchida, Sayuri;
Kurihara, Eri;
Umehara, Takuya;
Tamura, Koji

Publication type:

Article

Picornaviruses and nuclear functions: targeting a cellular compartment distinct from the replication site of a positive-strand RNA virus.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00594

By:

Decheng Yang;
Pevear, Daniel C.;
Belov, George A.

Publication type:

Article

Evolution of the B-Block Binding Subunit of TFIIIC That Binds to the Internal Promoter for RNA Polymerase III.

Published in:

International Journal of Evolutionary Biology, 2014, p. 1, doi. 10.1155/2014/609865

By:

Matsutani, Sachiko

Publication type:

Article

Determining multiallelic complex copy number and sequence variation from high coverage exome sequencing data.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2123-y

By:

Forni, Diego;
Martin, Diana;
Abujaber, Razan;
Sharp, Andrew J.;
Sironi, Manuela;
Hollox, Edward J.

Publication type:

Article

A bioinformatic survey of RNA-binding proteins in Plasmodium.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2092-1

By:

Niranjan Reddy, B. P.;
Shrestha, Sony;
Hart, Kevin J.;
Xiaoying Liang;
Kemirembe, Karen;
Liwang Cui;
Lindner, Scott E.

Publication type:

Article

High-throughput RNA sequencing reveals the effects of 2,2',4,4' - tetrabromodiphenyl ether on retina and bone development of zebrafish larvae.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 120, doi. 10.1186/s12864-014-1194-5

By:

Ting Xu;
Jing Zhao;
Daqiang Yin;
Qingshun Zhao;
Bingzhi Dong

Publication type:

Article

RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 168, doi. 10.1186/s12864-014-1198-1

By:

Garcia-Seco, Daniel D.;
Zhang, Yang Y.;
Gutierrez-Mañero, Francisco Javier F. J.;
Martin, Cathie C.;
Ramos-Solano, Beatriz B.

Publication type:

Article

RNA expression signatures and posttranscriptional regulation in diabetic nephropathy.

Published in:

Nephrology Dialysis Transplantation, 2015, v. 30, p. iv35, doi. 10.1093/ndt/gfv079

By:

Rudnicki, Michael;
Beckers, Anneleen;
Neuwirt, Hannes;
Vandesompele, Jo

Publication type:

Article

In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p.

Published in:

Journal of Cell Biology, 2015, v. 211, n. 6, p. 1121, doi. 10.1083/jcb.201503135

By:

Smith, Carlas;
Lari, Azra;
Derrer, Carina Patrizia;
Ouwehand, Anette;
Rossouw, Ammeret;
Huisman, Maximiliaan;
Dange, Thomas;
Hopman, Mark;
Joseph, Aviva;
Zenklusen, Daniel;
Weis, Karsten;
Grunwald, David;
Montpetit, Ben

Publication type:

Article

Long non-coding RNA-Low Expression in Tumor inhibits the invasion and metastasis of esophageal squamous cell carcinoma by regulating p53 expression.

Published in:

Molecular Medicine Reports, 2016, v. 13, n. 4, p. 3074, doi. 10.3892/mmr.2016.4913

By:

PENG-LI WANG;
BIN LIU;
YANG XIA;
CHUN-FENG PAN;
TENG MA;
YI-JIANG CHEN

Publication type:

Article

Non-coding RNA: a new frontier in regulatory biology.

Published in:

National Science Review, 2014, v. 1, n. 2, p. 190, doi. 10.1093/nsr/nwu008

By:

Xiang-Dong Fu

Publication type:

Article

Efficient HIV-1 inhibition by a 16 nt-long RNA aptamer designed by combining in vitro selection and in silico optimisation strategies.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06242

By:

Francisco J. Sánchez-Luque;
Stich, Michael;
Manrubia, Susanna;
Briones, Carlos;
Berzal-Herranz, Alfredo

Publication type:

Article

RNA Synthesis by in Vitro Selected Ribozymes for Recreating an RNA World.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 247, doi. 10.3390/life5010247

By:

Martin, Lyssa L.;
Unrau, Peter J.;
Müller, Ulrich F.

Publication type:

Article

How Amino Acids and Peptides Shaped the RNA World.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 230, doi. 10.3390/life5010230

By:

van der Gulik, Peter T.S.;
Speijer, Dave

Publication type:

Article

What RNA World? Why a Peptide/RNA Partnership Merits Renewed Experimental Attention.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 294, doi. 10.3390/life5010294

By:

Carter Jr., Charles W.

Publication type:

Article

Characterization of a Novel RNA Virus Discovered in the Autumnal Moth Epirrita autumnata in Sweden.

Published in:

Viruses (1999-4915), 2017, v. 9, n. 8, p. 214, doi. 10.3390/v9080214

By:

de Miranda, Joachim R.;
Hedman, Harald;
Onorati, Piero;
Stephan, Jörg;
Karlberg, Olof;
Bylund, Helena;
Terenius, Olle

Publication type:

Article

Membranous Replication Factories Induced by Plus-Strand RNA Viruses.

Published in:

Viruses (1999-4915), 2014, v. 6, n. 7, p. 2826, doi. 10.3390/v6072826

By:

Romero-Brey, Inés;
Bartenschlager, Ralf

Publication type:

Article

RNA Virus Reverse Genetics and Vaccine Design.

Published in:

Viruses (1999-4915), 2014, v. 6, n. 7, p. 2531, doi. 10.3390/v6072531

By:

Stobart, Christopher C.;
Moore, Martin L.

Publication type:

Article