Works matching DE "PROTEIN conformation"

Results: 1909

High-resolution structure of the Escherichia coli ribosome.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 4, p. 336, doi. 10.1038/nsmb.2994

By:

Noeske, Jonas;
Wasserman, Michael R;
Terry, Daniel S;
Altman, Roger B;
Blanchard, Scott C;
Cate, Jamie H D

Publication type:

Article

Structural characterization of full-length NSF and 20S particles.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 3, p. 268, doi. 10.1038/nsmb.2237

By:

Chang, Lei-Fu;
Chen, Song;
Liu, Cui-Cui;
Pan, Xijiang;
Jiang, Jiansen;
Bai, Xiao-Chen;
Xie, Xin;
Wang, Hong-Wei;
Sui, Sen-Fang

Publication type:

Article

Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 12, p. 1323, doi. 10.1038/nsmb.2165

By:

Hong, Seung Beom;
Kim, Byeong-Won;
Lee, Kyung-Eun;
Kim, Se Woong;
Jeon, Hyesung;
Kim, Joon;
Song, Hyun Kyu

Publication type:

Article

A conformational switch in complexin is required for synaptotagmin to trigger synaptic fusion.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 8, p. 934, doi. 10.1038/nsmb.2103

By:

Krishnakumar, Shyam S.;
Radoff, Daniel T.;
Kümmel, Daniel;
Giraudo, Claudio G.;
Feng Li;
Khandan, Lavan;
Baguley, Stephanie Wood;
Coleman, Jeff;
Reinisch, Karin M.;
Pincet, Frederic;
Rothman, James E.

Publication type:

Article

Conformational flexibility and rotation of the RING domain in activation of cullin-RING ligases.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 8, p. 863, doi. 10.1038/nsmb.2117

By:

Rahighi, Simin;
Dikic, Ivan

Publication type:

Article

Substrate-induced remodeling of the active site regulates human HTRA1 activity.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 3, p. 386, doi. 10.1038/nsmb.2013

By:

Truebestein, Linda;
Tennstaedt, Annette;
Mönig, Timon;
Krojer, Tobias;
Canellas, Flavia;
Kaiser, Markus;
Clausen, Tim;
Ehrmann, Michael

Publication type:

Article

Precise mapping of subunits in multiprotein complexes by a versatile electron microscopy label.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 6, p. 775, doi. 10.1038/nsmb.1811

By:

Flemming, Dirk;
Thierbach, Karsten;
Stelter, Philipp;
Böttcher, Bettina;
Hurt, Ed

Publication type:

Article

SRP: adapting to life in the chloroplast.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 6, p. 676, doi. 10.1038/nsmb0610-676

By:

Henry, Ralph L.

Publication type:

Article

Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 38, doi. 10.1038/nsmb.1753

By:

Horton, John R.;
Upadhyay, Anup K.;
Qi, Hank H.;
Xing Zhang;
Yang Shi;
Xiaodong Cheng

Publication type:

Article

Modulation of protein properties in living cells using nanobodies.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 133, doi. 10.1038/nsmb.1727

By:

Kirchhofer, Axel;
Helma, Jonas;
Schmidthals, Katrin;
Frauer, Carina;
Cui, Sheng;
Karcher, Annette;
Pellis, Mireille;
Muyldermans, Serge;
Casas-Delucchi, Corella S.;
Cardoso, M. Cristina;
Leonhardt, Heinrich;
Hopfner, Karl-Peter;
Rothbauer, Ulrich

Publication type:

Article

Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 7, p. 684, doi. 10.1038/nsmb.1610

By:

Jianmin Gao;
Bosco, Daryl A.;
Powers, Evan T.;
Kelly, Jeffery W.

Publication type:

Article

Evidence of fibril-like β-sheet structures in a neurotoxic amyloid intermediate of Alzheimer's β-amyloid.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 12, p. 1157, doi. 10.1038/nsmb1345

By:

Chimon, Sandra;
Shaibat, Medhat A.;
Jones, Christopher R.;
Calero, Diana C.;
Aizezi, Buzulagu;
Ishii, Yoshitaka

Publication type:

Article

Single-molecule observations of neck linker conformational changes in the kinesin motor protein.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 10, p. 887, doi. 10.1038/nsmb1151

By:

Tomishige, Michio;
Stuurman, Nico;
Vale, Ronald D.

Publication type:

Article

Hsp90 structure: when two ends meet.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 6, p. 478, doi. 10.1038/nsmb0606-478

By:

Bracher, Andreas;
Hartl, F Ulrich

Publication type:

Article

The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 6, p. 540, doi. 10.1038/nsmb1103

By:

Shi, Hang;
Rojas, Raul;
Bonifacino, Juan S;
Hurley, James H

Publication type:

Article

Prolyl isomerization as a molecular timer in phage infection.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 7, p. 619, doi. 10.1038/nsmb946

By:

Eckert, Barbara;
Martin, Andreas;
Balbach, Jochen;
Schmid, Franz X.

Publication type:

Article

Transition states for protein folding have native topologies despite high structural variability.

Published in:

Nature Structural & Molecular Biology, 2004, v. 11, n. 5, p. 443, doi. 10.1038/nsmb765

By:

Lindorff-Larsen, Kresten;
Vendruscolo, Michel;
Paci, Emanuele;
Dobson, Christopher M.

Publication type:

Article

Sculpting a domain by splicing.

Published in:

Nature Structural & Molecular Biology, 2004, v. 11, n. 1, p. 4, doi. 10.1038/nsmb0104-4

By:

Davletov, Bazbek;
Jimenez, Jose L.

Publication type:

Article

Amino Acids Conserved at the C-Terminal Half of the Ribonuclease T2 Family Contribute to Protein Stability of the Enzymes.

Published in:

Bioscience, Biotechnology & Biochemistry, 2004, v. 68, n. 8, p. 1748, doi. 10.1271/bbb.68.1748

By:

Kimura, Kazumi;
Numata, Tomoyuki;
Kakuta, Yoshimitsu;
Kimura, Makoto

Publication type:

Article

Construction and Chracterization of Chimeric Proteins Composed of Type-1 and Type-2 Periplasmic Binding Proteins Mg1B and ArgT.

Published in:

Bioscience, Biotechnology & Biochemistry, 2004, v. 68, n. 4, p. 808, doi. 10.1271/bbb.68.808

By:

Kashiwagi, Kenji;
Fukami-Kobayashi, Kaoru;
Shiba, Kiyotaka;
Nishikawa, Ken

Publication type:

Article

How to Characterize the Protein Structure and Polymer Conformation in Protein‐Polymer Conjugates – a Perspective.

Published in:

Macromolecular Chemistry & Physics, 2023, v. 224, n. 3, p. 1, doi. 10.1002/macp.202200353

By:

Mathieu‐Gaedke, Maria;
Böker, Alexander;
Glebe, Ulrich

Publication type:

Article

Not All Binding Sites Are Equal: Site Determination and Folding State Analysis of Gas‐Phase Protein‐Metallodrug Adducts.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 28, p. 1, doi. 10.1002/chem.202400268

By:

Eade, Liam;
Sullivan, Matthew P.;
Allison, Timothy M.;
Goldstone, David C.;
Hartinger, Christian G.

Publication type:

Article

Plasmon‐Enhanced Fluorescent Sensor based on Aggregation‐Induced Emission for the Study of Protein Conformational Transformation.

Published in:

Advanced Functional Materials, 2019, v. 29, n. 10, p. N.PAG, doi. 10.1002/adfm.201807211

By:

Cui, Yanyun;
Yuan, Chang;
Tan, Hongwei;
Zhang, Zhanbin;
Jia, Yijing;
Na, Na;
Ouyang, Jin

Publication type:

Article

Exploring aromatic cage flexibility of the histone methyllysine reader protein Spindlin1 and its impact on binding mode prediction: an in silico study.

Published in:

Journal of Computer-Aided Molecular Design, 2021, v. 35, n. 6, p. 695, doi. 10.1007/s10822-021-00391-9

By:

Luise, Chiara;
Robaa, Dina;
Sippl, Wolfgang

Publication type:

Article

Binding thermodynamics and interaction patterns of human purine nucleoside phosphorylase-inhibitor complexes from extensive free energy calculations.

Published in:

Journal of Computer-Aided Molecular Design, 2021, v. 35, n. 5, p. 643, doi. 10.1007/s10822-021-00382-w

By:

Huai, Zhe;
Yang, Huaiyu;
Sun, Zhaoxi

Publication type:

Article

Flexi-pharma: a molecule-ranking strategy for virtual screening using pharmacophores from ligand-free conformational ensembles.

Published in:

Journal of Computer-Aided Molecular Design, 2020, v. 34, n. 10, p. 1063, doi. 10.1007/s10822-020-00329-7

By:

Lans, Isaias;
Palacio-Rodríguez, Karen;
Cavasotto, Claudio N.;
Cossio, Pilar

Publication type:

Article

Conformational analysis of macrocycles: comparing general and specialized methods.

Published in:

Journal of Computer-Aided Molecular Design, 2020, v. 34, n. 3, p. 231, doi. 10.1007/s10822-020-00277-2

By:

Olanders, Gustav;
Alogheli, Hiba;
Brandt, Peter;
Karlén, Anders

Publication type:

Article

Coupling enhanced sampling of the apo-receptor with template-based ligand conformers selection: performance in pose prediction in the D3R Grand Challenge 4.

Published in:

Journal of Computer-Aided Molecular Design, 2020, v. 34, n. 2, p. 149, doi. 10.1007/s10822-019-00244-6

By:

Basciu, Andrea;
Koukos, Panagiotis I.;
Malloci, Giuliano;
Bonvin, Alexandre M. J. J.;
Vargiu, Attilio V.

Publication type:

Article

D3R Grand Challenge 4: prospective pose prediction of BACE1 ligands with AutoDock-GPU.

Published in:

Journal of Computer-Aided Molecular Design, 2019, v. 33, n. 12, p. 1071, doi. 10.1007/s10822-019-00241-9

By:

Santos-Martins, Diogo;
Eberhardt, Jerome;
Bianco, Giulia;
Solis-Vasquez, Leonardo;
Ambrosio, Francesca Alessandra;
Koch, Andreas;
Forli, Stefano

Publication type:

Article

The role of water and protein flexibility in the structure-based virtual screening of allosteric GPCR modulators: an mGlu<sub>5</sub> receptor case study.

Published in:

Journal of Computer-Aided Molecular Design, 2019, v. 33, n. 9, p. 787, doi. 10.1007/s10822-019-00224-w

By:

Orgován, Zoltán;
Ferenczy, György G.;
Keserű, György M.

Publication type:

Article

ART–RRT: As-Rigid-As-Possible search for protein conformational transition paths.

Published in:

Journal of Computer-Aided Molecular Design, 2019, v. 33, n. 8, p. 705, doi. 10.1007/s10822-019-00216-w

By:

Nguyen, Minh Khoa;
Jaillet, Léonard;
Redon, Stéphane

Publication type:

Article

Docking-undocking combination applied to the D3R Grand Challenge 2015.

Published in:

Journal of Computer-Aided Molecular Design, 2016, v. 30, n. 9, p. 805, doi. 10.1007/s10822-016-9979-z

By:

Ruiz-Carmona, Sergio;
Barril, Xavier

Publication type:

Article

Effects of protein conformation in docking: improved pose prediction through protein pocket adaptation.

Published in:

Journal of Computer-Aided Molecular Design, 2009, v. 23, n. 6, p. 355, doi. 10.1007/s10822-009-9266-3

By:

Jain, Ajay N.

Publication type:

Article

Applications and advancements of FT‐ICR‐MS for interactome studies.

Published in:

Mass Spectrometry Reviews, 2022, v. 41, n. 2, p. 248, doi. 10.1002/mas.21675

By:

Chavez, Juan D.;
Park, Sung‐Gun;
Mohr, Jared P.;
Bruce, James E.

Publication type:

Article

THE MAKING OF A FOOTPRINT IN PROTEIN FOOTPRINTING: A REVIEW IN HONOR OF MICHAEL L. GROSS.

Published in:

Mass Spectrometry Reviews, 2021, v. 40, n. 3, p. 177, doi. 10.1002/mas.21632

By:

McKenzie‐Coe, Alan;
Shortt, Raquel;
Jones, Lisa M.

Publication type:

Article

Prions: Roles in Development and Adaptive Evolution.

Published in:

Journal of Molecular Evolution, 2020, v. 88, n. 5, p. 427, doi. 10.1007/s00239-020-09944-2

By:

Dixson, Jamie D.;
Azad, Rajeev K.

Publication type:

Article

Protein Evolution is Potentially Governed by Protein Stability: Directed Evolution of an Esterase from the Hyperthermophilic Archaeon Sulfolobus tokodaii.

Published in:

Journal of Molecular Evolution, 2018, v. 86, n. 5, p. 283, doi. 10.1007/s00239-018-9843-y

By:

Kurahashi, Ryo;
Sano, Satoshi;
Takano, Kazufumi

Publication type:

Article

Evolution of Metamorphism in Thymidylate Synthases Within the Primate Lineages.

Published in:

Journal of Molecular Evolution, 2011, v. 72, n. 3, p. 306, doi. 10.1007/s00239-011-9433-8

By:

BeiBei Luo;
Johnson, Saphronia R.;
Lebioda, Lukasz;
Berger, Sondra H.

Publication type:

Article

Understanding the Effect of Secondary Structures and Aggregation on Human Protein Folding Class Evolution.

Published in:

Journal of Molecular Evolution, 2010, v. 71, n. 1, p. 60, doi. 10.1007/s00239-010-9364-9

By:

Begum, Tina;
Ghosh, Tapash Chandra

Publication type:

Article

Connectivity of Neutral Networks, Overdispersion, and Structural Conservation in Protein Evolution.

Published in:

Journal of Molecular Evolution, 2003, v. 56, n. 3, p. 243, doi. 10.1007/s00239-002-2350-0

By:

Bastolla, Ugo;
Porto, Markus;
Roman, H. Eduardo;
Vendruscolo, Michele H.

Publication type:

Article

Evidence of distinct α-synuclein strains underlying disease heterogeneity.

Published in:

Acta Neuropathologica, 2021, v. 142, n. 1, p. 73, doi. 10.1007/s00401-020-02163-5

By:

Holec, Sara A. M.;
Woerman, Amanda L.

Publication type:

Article

PrP aggregation can be seeded by pre-formed recombinant PrP amyloid fibrils without the replication of infectious prions.

Published in:

Acta Neuropathologica, 2016, v. 132, n. 4, p. 611, doi. 10.1007/s00401-016-1594-5

By:

Barron, Rona;
King, Declan;
Jeffrey, Martin;
McGovern, Gillian;
Agarwal, Sonya;
Gill, Andrew;
Piccardo, Pedro

Publication type:

Article

Propagation of alpha-synuclein pathology: hypotheses, discoveries, and yet unresolved questions from experimental and human brain studies.

Published in:

Acta Neuropathologica, 2016, v. 131, n. 1, p. 49, doi. 10.1007/s00401-015-1485-1

By:

Uchihara, Toshiki;
Giasson, Benoit

Publication type:

Article

Chasing acyl carrier protein through a catalytic cycle of lipid A production.

Published in:

Nature, 2014, v. 505, n. 7483, p. 422, doi. 10.1038/nature12679

By:

Masoudi, Ali;
Raetz, Christian R. H.;
Zhou, Pei;
Pemble IV, Charles W.

Publication type:

Article

Trapping the dynamic acyl carrier protein in fatty acid biosynthesis.

Published in:

Nature, 2014, v. 505, n. 7483, p. 427, doi. 10.1038/nature12810

By:

Nguyen, Chi;
Haushalter, Robert W.;
Lee, D. John;
Markwick, Phineus R. L.;
Bruegger, Joel;
Caldara-Festin, Grace;
Finzel, Kara;
Jackson, David R.;
Ishikawa, Fumihiro;
O'Dowd, Bing;
McCammon, J. Andrew;
Opella, Stanley J.;
Tsai, Shiou-Chuan;
Burkart, Michael D.

Publication type:

Article

Activation and allosteric modulation of a muscarinic acetylcholine receptor.

Published in:

Nature, 2013, v. 504, n. 7478, p. 101, doi. 10.1038/nature12735

By:

Kruse, Andrew C.;
Ring, Aaron M.;
Manglik, Aashish;
Hu, Jianxin;
Hu, Kelly;
Eitel, Katrin;
Hübner, Harald;
Pardon, Els;
Valant, Celine;
Sexton, Patrick M.;
Christopoulos, Arthur;
Felder, Christian C.;
Gmeiner, Peter;
Steyaert, Jan;
Weis, William I.;
Garcia, K. Christopher;
Wess, Jürgen;
Kobilka, Brian K.

Publication type:

Article

Formation of Amyloid-Like Conformational States of β-Structured Membrane Proteins on the Example of OMPF Porin from the Yersinia pseudotuberculosis Outer Membrane.

Published in:

Biochemistry (00062979), 2024, v. 89, n. 6, p. 1079, doi. 10.1134/S0006297924060087

By:

Novikova, Olga D.;
Rybinskaya, Tatyana V.;
Zelepuga, Elena A.;
Uversky, Vladimir N.;
Kim, Nataliya Yu.;
Chingizova, Ekaterina A.;
Menchinskaya, Ekaterina S.;
Khomenko, Valentina A.;
Chistyulin, Dmitriy K.;
Portnyagina, Olga Yu.

Publication type:

Article

Structure and Polymorphism of Amyloid and Amyloid-Like Aggregates.

Published in:

Biochemistry (00062979), 2022, v. 87, n. 5, p. 450, doi. 10.1134/S0006297922050066

By:

Matiiv, Anton B.;
Trubitsina, Nina P.;
Matveenko, Andrew G.;
Barbitoff, Yury A.;
Zhouravleva, Galina A.;
Bondarev, Stanislav A.

Publication type:

Article

Anion-Specific Effects on the Alkaline State of Cytochrome c.

Published in:

Biochemistry (00062979), 2021, v. 86, n. 1, p. 59, doi. 10.1134/S0006297921010065

By:

Sedlák, Erik;
Kožár, Tibor;
Varhač, Rastislav;
Musatov, Andrej;
Tomášková, Nataša

Publication type:

Article

Spectroscopic Characterization of the Binding and Release of Hydrophilic, Hydrophobic and Amphiphilic Molecules from Ovalbumin Supramolecular Hydrogels.

Published in:

Gels (2310-2861), 2023, v. 9, n. 1, p. 14, doi. 10.3390/gels9010014

By:

Vesković, Ana;
Bajuk-Bogdanović, Danica;
Arion, Vladimir B.;
Popović Bijelić, Ana

Publication type:

Article