Works matching DE "GENOMICS"

Results: 5000

The quest for a complete understanding of the human genome.

Published in:

Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01523-8

By:

Abou Tayoun, Ahmad;
Ali, Hamad;
Mokrab, Younes

Publication type:

Article

Evolution of Duplicated Hox Gene Clusters in Land Snails and Slugs.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2025, v. 344, n. 6, p. 363, doi. 10.1002/jez.b.23322

By:

McHale, Finn;
Mulhair, Peter O.;
Holland, Peter W. H.

Publication type:

Article

Characterization of Carbapenemase-producing Enterobacterales isolated from patients returning from Sub-Saharan Africa, France, 2015–2022.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2025, v. 80, n. 8, p. 2285, doi. 10.1093/jac/dkaf206

By:

Poignon, Corentin;
Dortet, Laurent;
Birer, Aurélien;
Rezzoug, Inès;
Emeraud, Cécile;
Girlich, Delphine;
Naas, Thierry;
Bonnin, Rémy A;
Jousset, Agnès B

Publication type:

Article

AncestryGeni: a novel genetic ancestry classification pipeline for small and noisy sequence data Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf391

By:

Elhaik, Eran;
Behnamian, Sara;
Howe, Michael;
Tang, Hongwei;
Yan, Huihuang;
Tian, Shulan;
Shivaram, Suganti;
Mendoza, Cinthya Zepeda;
MacLachlan, Kylee;
Usmani, Saad;
Pirooznia, Mehdi;
Morgan, Gareth;
Blaney, Patrick;
Maura, Francesco;
Baughn, Linda B

Publication type:

Article

Agptools: a utility suite for editing genome assemblies Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf388

By:

Ricemeyer, Edward S;
Carroll, Rachel A;
Warren, Wesley C

Publication type:

Article

DGHNN: a deep graph and hypergraph neural network for pan-cancer related gene prediction Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf379

By:

Li, Bing;
Xiao, Xin;
Zhang, Chao;
Xiao, Ming;
Zhang, Le

Publication type:

Article

CAGEcleaner: reducing genomic redundancy in gene cluster mining Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf373

By:

Vrieze, Lucas De;
Biltjes, Miguel;
Lukashevich, Sofya;
Tsurumi, Kodai;
Masschelein, Joleen

Publication type:

Article

Rapid Plasmid-Mediated Acquisition of Erythromycin Resistance via ermX in Corynebacterium striatum: A 72-Hour Clinical Evolution.

Published in:

Infection & Drug Resistance, 2025, v. 18, p. 3771, doi. 10.2147/IDR.S531265

By:

Chen, Zongyao;
Jiang, Yayun;
Wang, Dengchao;
Jiang, Shuming

Publication type:

Article

Genomic characterization of tumor mutational burden-high breast carcinomas.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-01045-x

By:

Vougiouklakis, Theodore;
Vanderbilt, Chad;
Rana, Satshil;
Mohanty, Abhinita;
Pareja, Fresia;
Brogi, Edi;
Schwartz, Christopher;
Arcila, Maria E.;
Ladanyi, Marc;
Wen, Hanna Y.;
Ross, Dara S.

Publication type:

Article

Clinical impact of single-gene vs. panel sequencing in advanced HR + /HER2− breast cancer: insights and implications.

Published in:

NPJ Breast Cancer, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41523-025-00805-z

By:

Klocker, Eva Valentina;
Dobrić, Nina;
Graf, Ricarda;
Beichler, Christine;
Hlauschek, Dominik;
Suppan, Christoph;
Pancheri, Lara;
Egle, Daniel;
Albertini, Carmen;
Bartsch, Rupert;
Starzer, Angelika Martina;
Jost, Philipp Jakob;
Rinnerthaler, Gabriel;
Heitzer, Ellen;
Dandachi, Nadia;
Balic, Marija

Publication type:

Article

７株奶牛源牛支原体中国分离株的比较基因组学分析.

Published in:

Journal of Nanjing Agricultural University / Nanjuing Nongye Daxue Xuebao, 2025, v. 48, n. 4, p. 892, doi. 10.7685/jnau.202403037

By:

吴春琳;
王梦瑶;
吴雨伦;
殳婕;
孙学强;
潘子豪;
姚火春

Publication type:

Article

基于共线性长测序数据的单染色体组装方法.

Published in:

Journal of Nanjing Agricultural University / Nanjuing Nongye Daxue Xuebao, 2025, v. 48, n. 4, p. 969, doi. 10.7685/jnau.202403042

By:

李梦然;
甘祥超

Publication type:

Article

Comprehensive in vitro and whole-genome characterization of probiotic properties in Pediococcus acidilactici P10 isolated from Iranian broiler chicken.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-13470-w

By:

Tabashiri, Raana;
Mahmoodian, Sahar;
Pakdel, Mohammad Hossein;
Shariati, Vahid;
Meimandipour, Amir;
Zamani, Javad

Publication type:

Article

Genomic analysis of the 2017 Aotearoa New Zealand outbreak of Mycoplasma bovis and its position within the global population structure.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1600146

By:

Binney, Barbara M.;
Gias, Edna;
Foxwell, Jonathan;
Little, Alvey;
Biggs, Patrick J.;
French, Nigel;
Lambert, Callum;
Ha, Hye Jeong;
Carter, Glen P.;
Gyuranecz, Miklós;
Pardon, Bart;
De Vliegher, Sarne;
Boyen, Filip;
Bokma, Jade;
Krömker, Volker;
Wente, Nicole;
Mahony, Timothy J.;
Gibson, Justine S.;
Barnes, Tamsin S.;
Wawegama, Nadeeka

Publication type:

Article

Isolation, characterization, and genomic analysis of Pediococcus pentosaceus M1 and Staphylococcus capitis D3 nitrate-reducing bacteria from fermented Korean food.

Published in:

3 Biotech, 2025, v. 15, n. 9, p. 1, doi. 10.1007/s13205-025-04414-2

By:

Jeong, Seon-Ung;
Kang, Gyeong-Seok;
Park, Cheon-Seok;
Jung, Jong-Hyun;
Chun, Hyunsoo;
Seo, Dong-Ho;
Shin, Donghyun

Publication type:

Article

SIRPA, BTN3A1, and TDO2 in osteosarcoma: a prognostic triad with therapeutic implications from integrated genomic and pharmacogenomic data.

Published in:

Journal of Orthopaedic Surgery & Research, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13018-025-06171-7

By:

Zhang, Han-jing;
Yang, Zhi-Jun;
Huang, Wen;
Chen, Dan;
Xiang, Jie;
Chen, Wen-kang

Publication type:

Article

Investigation of the Usability of Polymeric Nanoparticle-Based Transfection Agent for CRISPR/CAS9 in HUVEC Cell Line.

Published in:

Afyon Kocatepe University Journal of Science & Engineering / Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi, 2025, v. 25, n. 4, p. 712, doi. 10.35414/akufemubid.1584459

By:

İMAMOĞLU, Rizvan;
KAPLAN, Özlem;
GÖK, Mehmet Koray;
GÖKÇE, İsa

Publication type:

Article

A long-term glioblastoma survivor with Lynch syndrome: a case report of tumor molecular and microenvironment characterization.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03361-x

By:

Zhou, Yiqiang;
Duan, Qianqian;
Han, Tiantian;
Piao, Yueshan;
Tang, Jie

Publication type:

Article

The role of cellular heterogeneity in thyroid cancer: a multi-modal analysis approach with Mendelian randomization.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03348-8

By:

Qian, Yichun;
Chen, Wei;
Chen, Xinyuan;
Cheng, Shuai;
Liu, Fangzhou

Publication type:

Article

Omics Technologies: Unraveling Abiotic Stress Tolerance Mechanisms for Sustainable Crop Improvement.

Published in:

Journal of Plant Growth Regulation, 2025, v. 44, n. 7, p. 4165, doi. 10.1007/s00344-025-11674-y

By:

Saleem, Muhammad Hamzah;
Noreen, Sana;
Ishaq, Izwa;
Saleem, Ammara;
Khan, Khalid Ali;
Ercisli, Sezai;
Anas, Muhammad;
Khalid, Awais;
Ahmed, Temoor;
Hassan, Ammara;
Fahad, Shah

Publication type:

Article

Exploring the Complete Chloroplast Genomes of Key Lamiaceae Species Uncovers the Secrets of Evolutionary Dynamics and Phylogenetic Relationships.

Published in:

Journal of Plant Growth Regulation, 2025, v. 44, n. 7, p. 3974, doi. 10.1007/s00344-025-11666-y

By:

Alp Furan, Mehmet;
Yildiz, Faruk;
Kaya, Ozkan

Publication type:

Article

Primary cutaneous NUT adnexal carcinoma: morphologic, genetic and methylation analysis of seven new cases with comparison to extracutaneous NUT carcinoma and NUTM1‐rearranged porocarcinoma.

Published in:

Histopathology, 2025, v. 87, n. 3, p. 375, doi. 10.1111/his.15444

By:

Legrand, Mélanie;
Louveau, Baptiste;
Osio, Amélie;
Tallet, Anne;
Calonje, Eduardo;
Scoazec, Jean‐Yves;
de la Fouchardiere, Arnaud;
Tirode, Franck;
Von Deimling, Andreas;
Busam, Klaus;
Shah, Ahmed;
Flaman, Ashley;
Jouenne, Fanélie;
Mourah, Samia;
Pissaloux, Daniel;
Lantuejoul, Sylvie;
French, Christopher A;
Goto, Keisuke;
Cribier, Bernard;
Dehner, Carina A

Publication type:

Article

Six new bacterial species of Marinilabiliales isolated from the marine coastal sediment and reclassified Ancylomarina and Labilibaculum as Marinifilum comb. nov. based on the genome analysis.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1634775

By:

Zhang, Han-Zhe;
Teng, Jin-Hao;
Zhou, Hao-Yu;
Liu, Tian-He;
Lu, De-Chen;
Du, Zong-Jun

Publication type:

Article

Genomic analysis of the 2017 Aotearoa New Zealand outbreak of Mycoplasma bovis and its position within the global population structure.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1600146

By:

Binney, Barbara M.;
Gias, Edna;
Foxwell, Jonathan;
Little, Alvey;
Biggs, Patrick J.;
French, Nigel;
Lambert, Callum;
Ha, Hye Jeong;
Carter, Glen P.;
Gyuranecz, Miklós;
Pardon, Bart;
De Vliegher, Sarne;
Boyen, Filip;
Bokma, Jade;
Krömker, Volker;
Wente, Nicole;
Mahony, Timothy J.;
Gibson, Justine S.;
Barnes, Tamsin S.;
Wawegama, Nadeeka

Publication type:

Article

A likelihood ratio framework for inferring close kinship from dynamically selected SNPs.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1635734

By:

Ge, Jianye;
Budowle, Bruce;
Cariaso, Michael;
Mittelman, Kristen;
Mittelman, David

Publication type:

Article

The peruvian genome project: expanding the global pool of genome diversity from South America.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1614021

By:

Guio, Heinner;
Sanchez, Cesar;
Borda, Victor;
Jaramillo-Valverde, Luis;
Caceres, Omar;
Padilla, Carlos;
Trujillo, Omar;
Poterico, Julio A.;
Silva-Carvalho, Carolina;
Horton, Mary;
Lanata, Cristina M.;
Carnevale, Alessandra;
Romero-Hidalgo, Sandra;
Canizales-Quinteros, Samuel;
Acuña-Alonzo, Víctor;
Machacuay-Romero, Marco;
Novoa, Pedro;
Frisancho, Roberto;
Shady, Ruth;
Flores-Villanueva, Pedro

Publication type:

Article

Dominance of the GI-19 genotype and genomic characterization of the S1 gene in avian infectious bronchitis virus from 2020 to 2024.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1640152

By:

Guo, Xiaozhen;
Liu, Cunxia;
Hu, Feng;
Liu, Liping;
Zhu, Tong;
Gao, Yuehua;
Lin, Zhongyin;
Xu, Huaiying;
Huang, Bing;
Qin, Zhuoming;
Ma, Xiuli

Publication type:

Article

Genomic analysis of Companilactobacillus musae zy130 isolated from corn silage reveals its potential as a superior silage inoculant.

Published in:

3 Biotech, 2025, v. 15, n. 9, p. 1, doi. 10.1007/s13205-025-04464-6

By:

Ma, Jing;
Xu, Dongmei;
Usman, Samaila;
Amole, Tunde Adegoke;
Guo, Xusheng

Publication type:

Article

Integrative genomic structural variation analysis unveils genetic architecture underlying important traits in Gossypium barbadense.

Published in:

Theoretical & Applied Genetics, 2025, v. 138, n. 9, p. 1, doi. 10.1007/s00122-025-04987-9

By:

Li, Hongge;
Wang, Zhenzhen;
Peng, Zhen;
Wang, Pengpeng;
Chen, Baojun;
Geng, Xiaoli;
Hu, Daowu;
Zhang, Peng;
Ma, Jun;
He, Shoupu;
Du, Xiongming

Publication type:

Article

Distinctive chromosomal, mutational and transcriptional profiling in colon versus rectal cancers.

Published in:

Journal of Translational Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12967-025-06908-2

By:

De Angelis, Maria Teresa;
Rizzuto, Antonia;
Amaddeo, Angela;
Sagnelli, Carlo;
Vono, Niccolò;
Reda, Michela;
Lise, Valentina;
Parrillo, Luca;
De Marco, Carmela;
Malanga, Donatella;
Santamaria, Gianluca;
Viglietto, Giuseppe

Publication type:

Article

Effects of Various Factors on Transcription Activity of pogo Transposons in Oyster Crassostrea gigas.

Published in:

Molecular Biology, 2025, v. 59, n. 4, p. 494, doi. 10.1134/S0026893325700141

By:

Puzakova, L. V.;
Osipova, A. S.;
Ulupova, Yu. N.;
Puzakov, M. V.;
Puzakova, P. M.

Publication type:

Article

Advancements in multi-omics research to address challenges in Alzheimer's disease: a systems biology approach utilizing molecular biomarkers and innovative strategies.

Published in:

Frontiers in Aging Neuroscience, 2025, p. 1, doi. 10.3389/fnagi.2025.1591796

By:

Cardillo, Madison;
Katam, Keyura;
Suravajhala, Prashanth

Publication type:

Article

Periodontitis History Shapes the Early Peri‐Implant Microbiome Formation: A Metagenomic Analysis.

Published in:

Journal of Clinical Periodontology, 2025, v. 52, n. 7, p. 1011, doi. 10.1111/jcpe.14147

By:

Wang, Miao;
Liu, Yi Bing;
Tong, Wai Man;
Leung, Wai Keung;
He, Long Long;
Xu, Xin;
Xu, Dan;
Zhou, Qin

Publication type:

Article

Comparative genome analysis of Pasteurella multocida from Australian domestic animals suggests broad patterns of transmissions across multiple hosts and origins.

Published in:

PLoS ONE, 2025, v. 20, n. 8, p. 1, doi. 10.1371/journal.pone.0329807

By:

Allen, Joanne L.;
Bushell, Rhys N.;
Noormohammadi, Amir H.;
Whiteley, Pam;
Ballard, Susan A.;
Valcanis, Mary;
Browning, Glenn F.;
Marenda, Marc S.

Publication type:

Article

Evaluation of therapeutic agent selection based on comprehensive genomic profiling in gastroenteropancreatic neuroendocrine neoplasms.

Published in:

PLoS ONE, 2025, v. 20, n. 8, p. 1, doi. 10.1371/journal.pone.0325727

By:

Miyazawa, Suguru;
Ono, Hiroaki;
Yamashita, Hironari;
Asano, Daisuke;
Ishikawa, Yoshiya;
Watanabe, Shuichi;
Ueda, Hiroki;
Aoyama, Satoru;
Ishibashi, Naoya;
Akahoshi, Keiichi;
Ikeda, Sadakatsu;
Tanabe, Minoru

Publication type:

Article

Characterization and comparative analysis of the complete mitochondrial genome of Phlomoides rotata, a traditional Tibetan medicinal plant.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11871-9

By:

Liu, Houzhou;
Tian, Zhongqiong;
Danzin, Tsering;
Tan, Xin;
Wang, Junwei;
La, Qiong;
Li, Wei

Publication type:

Article

Genomic analyses support locally derived crown-of-thorns seastar outbreaks in the Pacific.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02350-4

By:

Leiva, Carlos;
Martín-Huete, Marta;
Lemer, Sarah

Publication type:

Article

Multi-context modeling of driver pathways reveals common and specific mechanisms across 23 cancer types.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013349

By:

Zhou, Wenjia;
Zhang, Junhua

Publication type:

Article

PCR-based detection of hereditary mutations in SLC2A9, BTBD17, and NECAP1 among native Korean dog breeds.

Published in:

Journal of Veterinary Science, 2025, v. 26, n. 4, p. 1, doi. 10.4142/jvs.25047

By:

Mingue Kang;
Byeongyong Ahn;
Jaeyeol Shin;
Chankyu Park

Publication type:

Article

Analysis of Genomic Characteristics and Genome-Wide Microsatellite Distribution Pattern of the Blue Shark (Prionace glauca).

Published in:

Russian Journal of Genetics, 2025, v. 61, n. 7, p. 860, doi. 10.1134/S1022795425700371

By:

Li, M. S.;
Qiu, Z. Y.;
Wang, T.;
Sun, Y. Y.;
Hu, C. C.;
Xu, S. Y.

Publication type:

Article

广谱铜绿假单胞菌噬菌体PAPX的生物学特性及生物膜清除能力的研究.

Published in:

Journal of Nanjing Medical University: Natural Sciences, 2025, v. 45, n. 7, p. 945, doi. 10.7655/NYDXBNSN250416

By:

谢萧屹;
汪心婕;
戎誉;
陈淑华;
刘根焰;
白莉;
汤华民

Publication type:

Article

JAK2 mutation, a potential cause of increasing Hemoglobin levels in symptomatic aged women.

Published in:

Medical Laboratory Journal, 2025, v. 19, n. 2, p. 30, doi. 10.29252/mlj.19.2.30

By:

Siahmargoie, Zeinab;
Hojjati, Mohammad Taher;
Bazzazi, Hadi;
Kalavi, Khodaberdi;
Zakeri, Mana;
Joshaghani, Hadi

Publication type:

Article

Molecular Characterization of Virulence Genes in Serratia marcescens Isolates from Clinical Cases in Al-Diwaniyah, Iraq: A Cross-Sectional Study.

Published in:

Iranian Journal of Medical Microbiology, 2025, v. 19, n. 2, p. 127, doi. 10.30699/ijmm.19.2.127

By:

Kazar, Aintizar Jabir;
Hussein, Azhar Noory

Publication type:

Article

Genomics of T-lymphoblastic leukemia/lymphoma: 2023 SH/EAHP workshop proceedings.

Published in:

2025

By:

Kanagal-Shamanna, Rashmi;
Weinberg, Olga K;
Bueso-Ramos, Carlos E

Publication type:

Conference Paper/Materials

Causal relationship between immune cells and venous thromboembolism: a bidirectional two-sample Mendelian randomization study.

Published in:

Thrombosis Journal, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12959-025-00754-4

By:

Xiao, Wen;
Gu, Danfeng;
Zhang, Mingqi;
Liao, Jiansu;
Xu, Tao;
Lu, Hailin;
Zhao, Yang

Publication type:

Article

Genetic Rarity: The First Case Report of TMPRSS3 Mutation Coinciding with Multicystic Dysplastic Kidney.

Published in:

Indian Journal of Nephrology, 2025, v. 35, n. 3, p. 1, doi. 10.25259/IJN_462_2024

By:

Abhinay, Abhishek;
Kumar, Nitish;
Panda, Satyabrata;
Singh, Ankur

Publication type:

Article

Genomic characterization and multidrug resistance of Pseudomonas aeruginosa isolated from peregrine falcons in Saudi Arabia: A One Health perspective.

Published in:

Veterinary World, 2025, v. 18, n. 7, p. 1964, doi. 10.14202/vetworld.2025.1964-1971

By:

Wahdan, Ali;
Mohamed, Mahmoud;
Elhaig, Mahmoud M.;
Al-Rasheed, Mohammed;
Abd-Allah, Ehab M.

Publication type:

Article

A multilocus sequence typing scheme for the emerging respiratory pathogen Mycoplasma amphoriformeOpen Access.

Published in:

Letters in Applied Microbiology, 2025, v. 78, n. 6, p. 1, doi. 10.1093/lambio/ovaf073

By:

Simpson, Lily;
Macleod, Joshua;
Rowlands, Richard S;
Spiller, Owen B;
Dixon, Charlotte;
Jensen, Jorgen S;
Afshar, Baharak;
Seth-Smith, Helena M B;
Chalker, Victoria J;
Beeton, Michael L

Publication type:

Article

Clinical value of comprehensive genomic profiling on clinical trial enrollment for patients with advanced solid tumors.

Published in:

Oncologist, 2025, v. 30, n. 7, p. 1, doi. 10.1093/oncolo/oyae293

By:

Huang, Richard S P;
Lee, Jessica K;
Lofgren, Katherine T

Publication type:

Article

Cross-border data sharing for research in Africa: an analysis of the data protection and research ethics requirements in 12 jurisdictions Open Access.

Published in:

Journal of Law & the Biosciences, 2025, v. 12, n. 1, p. 1, doi. 10.1093/jlb/lsaf002

By:

Staunton, Ciara;
Edgcumbe, Aliki;
Abdulrauf, Lukman;
Gooden, Amy;
Ogendi, Paul;
Thaldar, Donrich

Publication type:

Article