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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.
Published in:
Eurosurveillance (15607917), 2020, v. 25, n. 32, p. 7, doi. 10.2807/1560-7917.ES.2020.25.32.2001410
By:
- Alm, Erik;
- Broberg, Eeva K.;
- Connor, Thomas;
- Hodcroft, Emma B.;
- Komissarov, Andrey B.;
- Maurer-Stro, Sebastian;
- Melidou, Angeliki;
- Neher, Richard A.;
- O'Toole, Áine;
- Pereyaslov, Dmitriy
Publication type:
Article
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.
Published in:
Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac080
By:
- Hill, Verity;
- Plessis, Louis Du;
- Peacock, Thomas P;
- Aggarwal, Dinesh;
- Colquhoun, Rachel;
- Carabelli, Alesandro M;
- Ellaby, Nicholas;
- Gallagher, Eileen;
- Groves, Natalie;
- Jackson, Ben;
- McCrone, J T;
- O'Toole, Áine;
- Price, Anna;
- Sanderson, Theo;
- Scher, Emily;
- Southgate, Joel;
- Volz, Erik;
- Barclay, Wendy S;
- Barrett, Jeffrey C;
- Chand, Meera
Publication type:
Article
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool.
Published in:
Virus Evolution, 2021, v. 7, n. 2, p. 1, doi. 10.1093/ve/veab064
By:
- O'Toole, Áine;
- Scher, Emily;
- Underwood, Anthony;
- Jackson, Ben;
- Hill, Verity;
- McCrone, John T;
- Colquhoun, Rachel;
- Ruis, Chris;
- Abu-Dahab, Khalil;
- Taylor, Ben;
- Yeats, Corin;
- Plessis, Louis du;
- Maloney, Daniel;
- Medd, Nathan;
- Attwood, Stephen W;
- Aanensen, David M;
- Holmes, Edward C;
- Pybus, Oliver G;
- Rambaut, Andrew
Publication type:
Article
Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25985-7
By:
- Butera, Yvan;
- Mukantwari, Enatha;
- Artesi, Maria;
- Umuringa, Jeanne d'arc;
- O'Toole, Áine Niamh;
- Hill, Verity;
- Rooke, Stefan;
- Hong, Samuel Leandro;
- Dellicour, Simon;
- Majyambere, Onesphore;
- Bontems, Sebastien;
- Boujemla, Bouchra;
- Quick, Josh;
- Resende, Paola Cristina;
- Loman, Nick;
- Umumararungu, Esperance;
- Kabanda, Alice;
- Murindahabi, Marylin Milumbu;
- Tuyisenge, Patrick;
- Gashegu, Misbah
Publication type:
Article
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08358-2
By:
- O'Toole, Áine;
- Pybus, Oliver G.;
- Abram, Michael E.;
- Kelly, Elizabeth J.;
- Rambaut, Andrew
Publication type:
Article
Publication-ready single nucleotide polymorphism visualization with snipit.
Published in:
Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae510
By:
- O'Toole, Áine;
- Aziz, Ammar;
- Maloney, Daniel
Publication type:
Article
SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.
Published in:
Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad575
By:
- Colquhoun, Rachel;
- Jackson, Ben;
- O'Toole, Áine;
- Rambaut, Andrew
Publication type:
Article
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Published in:
2021
By:
- Nicholls, Samuel M.;
- Poplawski, Radoslaw;
- Bull, Matthew J.;
- Underwood, Anthony;
- Chapman, Michael;
- Abu-Dahab, Khalil;
- Taylor, Ben;
- Colquhoun, Rachel M.;
- Rowe, Will P. M.;
- Jackson, Ben;
- Hill, Verity;
- O'Toole, Áine;
- Rey, Sara;
- Southgate, Joel;
- Amato, Roberto;
- Livett, Rich;
- Gonçalves, Sónia;
- Harrison, Ewan M.;
- Peacock, Sharon J.;
- Aanensen, David M.
Publication type:
Editorial
Faster Evolving Primate Genes Are More Likely to Duplicate.
Published in:
Molecular Biology & Evolution, 2018, v. 35, n. 1, p. 107, doi. 10.1093/molbev/msx270
By:
- O'Toole, Áine N;
- Hurst, Laurence D;
- McLysaght, Aoife
Publication type:
Article
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus.
Published in:
PLoS Biology, 2022, v. 20, n. 8, p. 1, doi. 10.1371/journal.pbio.3001769
By:
- Happi, Christian;
- Adetifa, Ifedayo;
- Mbala, Placide;
- Njouom, Richard;
- Nakoune, Emmanuel;
- Happi, Anise;
- Ndodo, Nnaemeka;
- Ayansola, Oyeronke;
- Mboowa, Gerald;
- Bedford, Trevor;
- Neher, Richard A.;
- Roemer, Cornelius;
- Hodcroft, Emma;
- Tegally, Houriiyah;
- O'Toole, Áine;
- Rambaut, Andrew;
- Pybus, Oliver;
- Kraemer, Moritz U. G.;
- Wilkinson, Eduan;
- Isidro, Joana
Publication type:
Article
Epigenetic age estimation of wild mice using faecal samples.
Published in:
Molecular Ecology, 2024, v. 33, n. 8, p. 1, doi. 10.1111/mec.17330
By:
- Hanski, Eveliina;
- Joseph, Susan;
- Raulo, Aura;
- Wanelik, Klara M.;
- O'Toole, Áine;
- Knowles, Sarah C. L.;
- Little, Tom J.
Publication type:
Article
Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics.
Published in:
PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0220225
By:
- Imrie, Lisa;
- Le Bihan, Thierry;
- O'Toole, Áine;
- Hickner, Paul V.;
- Dunn, W. Augustine;
- Weise, Benjamin;
- Rund, Samuel S. C.
Publication type:
Article
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-18877-9
By:
- Lemey, Philippe;
- Hong, Samuel L.;
- Hill, Verity;
- Baele, Guy;
- Poletto, Chiara;
- Colizza, Vittoria;
- O'Toole, Áine;
- McCrone, John T.;
- Andersen, Kristian G.;
- Worobey, Michael;
- Nelson, Martha I.;
- Rambaut, Andrew;
- Suchard, Marc A.
Publication type:
Article

Found: 13