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Intra-Host Citrus Tristeza Virus Populations during Prolonged Infection Initiated by a Well-Defined Sequence Variant in Nicotiana benthamiana.
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- Viruses (1999-4915), 2024, v. 16, n. 9, p. 1385, doi. 10.3390/v16091385
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- Article
Viral Fitness Determines the Magnitude of Transcriptomic and Epigenomic Reprograming of Defense Responses in Plants.
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- Molecular Biology & Evolution, 2020, v. 37, n. 7, p. 1866, doi. 10.1093/molbev/msaa091
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- Article
Molecular Evolution of the Plant Virus Family Bromoviridae Based on RNA3-Encoded Proteins.
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- Journal of Molecular Evolution, 2005, v. 61, n. 5, p. 697, doi. 10.1007/s00239-005-0021-7
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- Article
A Sliding Window-Based Method to Detect Selective Constraints in Protein-Coding Genes and Its Application to RNA Viruses.
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- Journal of Molecular Evolution, 2002, v. 55, n. 5, p. 509, doi. 10.1007/s00239-002-2346-9
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- Article
Phylogenetic Analysis of Viroid and Viroid-Like Satellite RNAs from Plants: A Reassessment.
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- Journal of Molecular Evolution, 2001, v. 53, n. 2, p. 155, doi. 10.1007/s002390010203
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- Article
Revisiting Orthotospovirus phylogeny using full-genome data and testing the contribution of selection, recombination and segment reassortment in the origin of members of new species.
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- Archives of Virology, 2021, v. 166, n. 2, p. 491, doi. 10.1007/s00705-020-04902-1
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- Article
Viroids: an Ariadne's thread into the RNA labyrinth.
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- EMBO Reports, 2006, v. 7, n. 6, p. 593, doi. 10.1038/sj.embor.7400706
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- Article
Mechanisms of genetic robustness in RNA viruses.
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- EMBO Reports, 2006, v. 7, n. 2, p. 168, doi. 10.1038/sj.embor.7400636
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- Article
Multiple Barriers to the Evolution of Alternative Gene Orders in a Positive-Strand RNA Virus.
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- Genetics, 2016, v. 202, n. 4, p. 1503, doi. 10.1534/genetics.115.185017
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- Article
Measuring Selection Coefficients Below 1023: Method, Questions, and Prospects.
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- Genetics, 2012, v. 190, n. 1, p. 175, doi. 10.1534/genetics.111.133454
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- Article
Dynamics of a Plant RNA Virus Intracellular Accumulation: Stamping Machine vs. Geometric Replication.
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- Genetics, 2011, v. 188, n. 3, p. 637, doi. 10.1534/genetics.111.129114
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- Article
Rate of deleterious mutation and the distribution of its effects on fitness in vesicular stomatitis virus.
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- Journal of Evolutionary Biology, 1999, v. 12, n. 6, p. 1078, doi. 10.1046/j.1420-9101.1999.00110.x
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- Article
Mutagenesis Scanning Uncovers Evolutionary Constraints on Tobacco Etch Potyvirus Membrane-Associated 6K2 Protein.
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- Genome Biology & Evolution, 2019, v. 11, n. 4, p. 1207, doi. 10.1093/gbe/evz069
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- Article
Engineered Functional Redundancy Relaxes Selective Constraints upon Endogenous Genes in Viral RNA Genomes.
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- Genome Biology & Evolution, 2018, v. 10, n. 7, p. 1823, doi. 10.1093/gbe/evy141
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- Article
2b or Not 2b: Experimental Evolution of Functional Exogenous Sequences in a Plant RNA Virus.
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- Genome Biology & Evolution, 2017, v. 9, n. 2, p. 297, doi. 10.1093/gbe/evw300
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- Article
Predicting the Stability of Homologous Gene Duplications in a Plant RNA Virus.
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- Genome Biology & Evolution, 2016, v. 8, n. 9, p. 3065, doi. 10.1093/gbe/evw219
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- Article
Shrinkage of Genome Size in a Plant RNA Virus upon Transfer of an Essential Viral Gene into the Host Genome.
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- Genome Biology & Evolution, 2014, v. 6, n. 3, p. 538, doi. 10.1093/gbe/evu036
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- Article
MicroRNA Precursors Are Not Structurally Robust but Plastic.
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- Genome Biology & Evolution, 2013, v. 5, n. 1, p. 181, doi. 10.1093/gbe/evs132
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- Article
The Rate and Spectrum of Spontaneous Mutations in a Plant RNA Virus.
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- Genetics, 2010, v. 185, n. 3, p. 983, doi. 10.1534/genetics.110.115915
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- Article
From Hypo- to Hypersuppression: Effect of Amino Acid Substitutions on the RNA-Silencing Suppressor Activity of the Tobacco etch potyvirus HC-Pro.
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- Genetics, 2008, v. 180, n. 2, p. 1039, doi. 10.1534/genetics.108.091363
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- Article
Epistasis and the Adaptability of an RNA Virus.
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- Genetics, 2005, v. 170, n. 3, p. 1001, doi. 10.1534/genetics.105.040741
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- Article
Molecular Basis of Adaptive Convergence in Experimental Populations of RNA Viruses.
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- Genetics, 2002, v. 162, n. 2, p. 533, doi. 10.1093/genetics/162.2.533
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- Article
Cost of Host Radiation in an RNA Virus.
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- Genetics, 2000, v. 156, n. 4, p. 1465, doi. 10.1093/genetics/156.4.1465
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- Article
Evolution of fitness in experimental populations of vesicular...
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- Genetics, 1996, v. 142, n. 3, p. 673, doi. 10.1093/genetics/142.3.673
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- Article
Approximate Variance of Nucleotide Divergence Between Two Sequences Estimated From Restriction Fragment Data.
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- Genetics, 1995, v. 140, n. 4, p. 1443
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- Article
Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations.
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- Scientific Reports, 2014, p. 1, doi. 10.1038/srep04625
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- Article
Effect of defective interfering RNAs on the vertical transmission of Tomato black ring virus.
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- Plant Protection Science, 2020, v. 56, n. 4, p. 261, doi. 10.17221/54/2020-PPS
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- Article
Effect of defective interfering RNAs on the vertical transmission of Tomato black ring virus.
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- Plant Protection Science, 2020, v. 56, n. 4, p. 261, doi. 10.17221/54/2020-PPS
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- Article
An assessment of the transmission rate of the Tomato black ring virus through tomato seeds.
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- Plant Protection Science, 2020, v. 56, n. 1, p. 9, doi. 10.17221/33/2019-PPS
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- Article
Topology analysis and visualization of Potyvirus protein-protein interaction network
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 129, doi. 10.1186/s12918-014-0129-8
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- Article
Tridimensional model structure and patterns of molecular evolution of Pepino mosaic virus TGBp3 protein.
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- Virology Journal, 2011, v. 8, n. 1, p. 318, doi. 10.1186/1743-422X-8-318
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- Article
Changes in the gene expression profile of Arabidopsis thaliana after infection with Tobacco etch virus.
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- Virology Journal, 2008, v. 5, p. 1, doi. 10.1186/1743-422X-5-92
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- Article
Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance.
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- BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-04866-3
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- Article
Changes in the composition of the RNA virome mark evolutionary transitions in green plants.
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- BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0288-8
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- Article
Why are viral genomes so fragile? The bottleneck hypothesis.
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- PLoS Computational Biology, 2021, v. 17, n. 7, p. 1, doi. 10.1371/journal.pcbi.1009128
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- Article
Genetic variability and evolutionary dynamics of tomato black ring virus population.
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- Plant Pathology, 2021, v. 70, n. 6, p. 1521, doi. 10.1111/ppa.13382
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Molecular evolution of tomato black ring virus and de novo generation of a new type of defective RNAs during long‐term passaging in different hosts.
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- Plant Pathology, 2020, v. 69, n. 9, p. 1767, doi. 10.1111/ppa.13258
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- Article
Phenotypic and genomic changes during Turnip mosaic virus adaptation to Arabidopsis thaliana mutants lacking epigenetic regulatory factors.
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- Evolution, 2024, v. 78, n. 1, p. 69, doi. 10.1093/evolut/qpad192
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- Article
EXPERIMENTAL EVOLUTION OF AN EMERGING PLANT VIRUS IN HOST GENOTYPES THAT DIFFER IN THEIR SUSCEPTIBILITY TO INFECTION.
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- Evolution, 2014, v. 68, n. 9, p. 2467, doi. 10.1111/evo.12458
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- Article
THE CAUSES OF EPISTASIS IN GENETIC NETWORKS.
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- Evolution, 2012, v. 66, n. 2, p. 586, doi. 10.1111/j.1558-5646.2011.01451.x
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- Article
EFFECTS OF POPULATION SIZE AND MUTATION RATE ON THE EVOLUTION OF MUTATIONAL ROBUSTNESS.
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- Evolution, 2007, v. 61, n. 3, p. 666, doi. 10.1111/j.1558-5646.2007.00064.x
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- Article
Accumulation Dynamics of Defective Genomes during Experimental Evolution of Two Betacoronaviruses.
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- Viruses (1999-4915), 2024, v. 16, n. 4, p. 644, doi. 10.3390/v16040644
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- Article
The International Virus Bioinformatics Meeting 2023.
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- Viruses (1999-4915), 2023, v. 15, n. 10, p. 2031, doi. 10.3390/v15102031
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- Article
Transmission of Diverse Variants of Strawberry Viruses Is Governed by a Vector Species.
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- Viruses (1999-4915), 2022, v. 14, n. 7, p. N.PAG, doi. 10.3390/v14071362
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- Article
DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data.
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- Viruses (1999-4915), 2022, v. 14, n. 5, p. 1114, doi. 10.3390/v14051114
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- Article
Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers.
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- Viruses (1999-4915), 2020, v. 12, n. 1, p. 16, doi. 10.3390/v12010016
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- Article
Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo.
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- Viruses (1999-4915), 2019, v. 11, n. 5, p. 425, doi. 10.3390/v11050425
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- Article
One Is Enough: In Vivo Effective Population Size Is Dose-Dependent for a Plant RNA Virus.
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- PLoS Pathogens, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.ppat.1002122
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- Article
Molecular Evolution of a Viral Non-Coding Sequence under the Selective Pressure of amiRNA-Mediated Silencing.
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- PLoS Pathogens, 2009, v. 5, n. 2, p. 1, doi. 10.1371/journal.ppat.1000312
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The Fittest versus the Flattest: Experimental Confirmation of the Quasispecies Effect with Subviral Pathogens.
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- PLoS Pathogens, 2006, v. 2, n. 12, p. 1187, doi. 10.1371/journal.ppat.0020136
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- Article