Works matching DE "METABOLIC flux analysis"

Results: 555

Designer Micelles Accelerate Flux Through Engineered Metabolism in E. coli and Support Biocompatible Chemistry.

Published in:

Angewandte Chemie, 2016, v. 128, n. 20, p. 6127, doi. 10.1002/ange.201600966

By:

Wallace, Stephen;
Balskus, Emily P.

Publication type:

Article

Krebs Cycle Metabolon: Structural Evidence of Substrate Channeling Revealed by Cross-Linking and Mass Spectrometry.

Published in:

Angewandte Chemie, 2015, v. 127, n. 6, p. 1871, doi. 10.1002/ange.201409336

By:

Wu, Fei;
Minteer, Shelley

Publication type:

Article

C flux analysis of cyanobacterial metabolism.

Published in:

Photosynthesis Research, 2015, v. 126, n. 1, p. 19, doi. 10.1007/s11120-014-0045-1

By:

Adebiyi, Adeola;
Jazmin, Lara;
Young, Jamey

Publication type:

Article

Metabolic flux analysis of Cyanothece sp. ATCC 51142 under mixotrophic conditions.

Published in:

Photosynthesis Research, 2013, v. 117, n. 1-3, p. 191, doi. 10.1007/s11120-013-9911-5

By:

Alagesan, Swathi;
Gaudana, Sandeep B.;
Sinha, Avinash;
Wangikar, Pramod P.

Publication type:

Article

Carbon metabolism and energy conversion of Synechococcus sp. PCC 7942 under mixotrophic conditions: comparison with photoautotrophic condition.

Published in:

Journal of Applied Phycology, 2012, v. 24, n. 4, p. 657, doi. 10.1007/s10811-011-9683-2

By:

Yan, Riming;
Zhu, Du;
Zhang, Zhibin;
Zeng, Qingui;
Chu, Ju

Publication type:

Article

A continuous flow bioreactor system for high‐throughput hyperpolarized metabolic flux analysis.

Published in:

NMR in Biomedicine, 2024, v. 37, n. 5, p. 1, doi. 10.1002/nbm.5107

By:

Christensen, Nichlas Vous;
Holm, Rikke;
Sanchez, Juan D.;
Hansen, Esben S. S.;
Lerche, Mathilde H.;
Ardenkjær‐Larsen, Jan Henrik;
Laustsen, Christoffer;
Bertelsen, Lotte Bonde

Publication type:

Article

Uncertainty quantification in flux balance analysis of spatially lumped and distributed models of neuron-astrocyte metabolism.

Published in:

Journal of Mathematical Biology, 2016, v. 73, n. 6/7, p. 1823, doi. 10.1007/s00285-016-1011-7

By:

Calvetti, Daniela;
Cheng, Yougan;
Somersalo, Erkki

Publication type:

Article

On dynamically generating relevant elementary flux modes in a metabolic network using optimization.

Published in:

Journal of Mathematical Biology, 2015, v. 71, n. 4, p. 903, doi. 10.1007/s00285-014-0844-1

By:

Oddsdóttir, Hildur;
Hagrot, Erika;
Chotteau, Véronique;
Forsgren, Anders

Publication type:

Article

Flux modules in metabolic networks.

Published in:

Journal of Mathematical Biology, 2014, v. 69, n. 5, p. 1151, doi. 10.1007/s00285-013-0731-1

By:

Müller, Arne;
Bockmayr, Alexander

Publication type:

Article

Modulation of polyamine metabolic flux in adipose tissue alters the accumulation of body fat by affecting glucose homeostasis.

Published in:

Amino Acids, 2014, v. 46, n. 3, p. 701, doi. 10.1007/s00726-013-1548-3

By:

Liu, Chunli;
Perez-Leal, Oscar;
Barrero, Carlos;
Zahedi, Kamyar;
Soleimani, Manoocher;
Porter, Carl;
Merali, Salim

Publication type:

Article

Improving flux predictions by integrating data from multiple strains.

Published in:

Bioinformatics, 2017, v. 33, n. 6, p. 893, doi. 10.1093/bioinformatics/btw706

By:

Long, Matthew R.;
Reed, Jennifer L.

Publication type:

Article

Visual workflows for 13C-metabolic flux analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 346, doi. 10.1093/bioinformatics/btu585

By:

Nöh, Katharina;
Droste, Peter;
Wiechert, Wolfgang

Publication type:

Article

Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property.

Published in:

Bioinformatics, 2014, v. 30, n. 22, p. 3232, doi. 10.1093/bioinformatics/btu529

By:

Chan, Siu Hung Joshua;
Solem, Christian;
Jensen, Peter Ruhdal;
Ji, Ping

Publication type:

Article

Derivative processes for modelling metabolic fluxes.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1892

By:

Žurauskienė, Justina;
Kirk, Paul;
Thorne, Thomas;
Pinney, John;
Stumpf, Michael

Publication type:

Article

Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition.

Published in:

Bioinformatics, 2014, v. 30, n. 11, p. 1569, doi. 10.1093/bioinformatics/btu021

By:

Hunt, Kristopher A.;
Folsom, James P.;
Taffs, Reed L.;
Carlson, Ross P.

Publication type:

Article

INCA: a computational platform for isotopically non-stationary metabolic flux analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1333, doi. 10.1093/bioinformatics/btu015

By:

Young, Jamey D.

Publication type:

Article

Refining carbon flux paths using atomic trace data.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 975, doi. 10.1093/bioinformatics/btt653

By:

Pey, Jon;
Planes, Francisco J.;
Beasley, John E.

Publication type:

Article

FastPros: screening of reaction knockout strategies for metabolic engineering.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 981, doi. 10.1093/bioinformatics/btt672

By:

Ohno, Satoshi;
Shimizu, Hiroshi;
Furusawa, Chikara

Publication type:

Article

An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3045, doi. 10.1093/bioinformatics/btt516

By:

Tepper, Naama;
Shlomi, Tomer

Publication type:

Article

NTFD—a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1226, doi. 10.1093/bioinformatics/btt119

By:

Hiller, Karsten;
Wegner, André;
Weindl, Daniel;
Cordes, Thekla;
Metallo, Christian M.;
Kelleher, Joanne K.;
Stephanopoulos, Gregory

Publication type:

Article

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.

Published in:

Bioinformatics, 2013, v. 29, n. 6, p. 815, doi. 10.1093/bioinformatics/btt036

By:

Ganter, Mathias;
Bernard, Thomas;
Moretti, Sébastien;
Stelling, Joerg;
Pagni, Marco

Publication type:

Article

13CFLUX2—high-performance software suite for 13C-metabolic flux analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 143, doi. 10.1093/bioinformatics/bts646

By:

Weitzel, Michael;
Nöh, Katharina;
Dalman, Tolga;
Niedenführ, Sebastian;
Stute, Birgit;
Wiechert, Wolfgang

Publication type:

Article

IsoCor: correcting MS data in isotope labeling experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 9, p. 1294, doi. 10.1093/bioinformatics/bts127

By:

Millard, Pierre;
Letisse, Fabien;
Sokol, Serguei;
Portais, Jean-Charles

Publication type:

Article

CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 891, doi. 10.1093/bioinformatics/btr719

By:

DeJongh, Matthew;
Bockstege, Benjamin;
Frybarger, Paul;
Hazekamp, Nicholas;
Kammeraad, Joshua;
McGeehan, Travis

Publication type:

Article

influx_s: increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 687

By:

Sokol, Serguei;
Millard, Pierre;
Portais, Jean-Charles

Publication type:

Article

Deciphering Metabolic Pathways in High-Seeding-Density Fed-Batch Processes for Monoclonal Antibody Production: A Computational Modeling Perspective.

Published in:

Bioengineering (Basel), 2024, v. 11, n. 4, p. 331, doi. 10.3390/bioengineering11040331

By:

Bokelmann, Carolin;
Ehsani, Alireza;
Schaub, Jochen;
Stiefel, Fabian

Publication type:

Article

Micro-Slab Coil Design for Hyperpolarized Metabolic Flux Analysis in Multiple Samples.

Published in:

Bioengineering (Basel), 2023, v. 10, n. 1, p. 14, doi. 10.3390/bioengineering10010014

By:

Lee, Geonhui;
Ruan, Thomas;
Wong, Claudia;
Deh, Kofi;
Abolarin, Alli;
Correa, Alexander;
Keshari, Kayvan R.;
Jeong, Sangmoo

Publication type:

Article

Exploiting stoichiometric redundancies for computational efficiency and network reduction.

Published in:

In Silico Biology, 2012, v. 12, n. 1/2, p. 55, doi. 10.3233/ISB-140464

By:

Ingalls, Brian P.;
Bembenek, Eric

Publication type:

Article

md_harmonize: A Python Package for Atom-Level Harmonization of Public Metabolic Databases.

Published in:

Metabolites (2218-1989), 2023, v. 13, n. 12, p. 1199, doi. 10.3390/metabo13121199

By:

Jin, Huan;
Moseley, Hunter N. B.

Publication type:

Article

Multiparametric Magnetic Resonance Imaging and Metabolic Characterization of Patient-Derived Xenograft Models of Clear Cell Renal Cell Carcinoma.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 11, p. 1117, doi. 10.3390/metabo12111117

By:

Agudelo, Joao Piraquive;
Upadhyay, Deepti;
Zhang, Dalin;
Zhao, Hongjuan;
Nolley, Rosalie;
Sun, Jinny;
Agarwal, Shubhangi;
Bok, Robert A.;
Vigneron, Daniel B.;
Brooks, James D.;
Kurhanewicz, John;
Peehl, Donna M.;
Sriram, Renuka

Publication type:

Article

Isotope-Assisted Metabolic Flux Analysis: A Powerful Technique to Gain New Insights into the Human Metabolome in Health and Disease.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 11, p. 1066, doi. 10.3390/metabo12111066

By:

Moiz, Bilal;
Li, Andrew;
Padmanabhan, Surya;
Sriram, Ganesh;
Clyne, Alisa Morss

Publication type:

Article

Analyzing and Resolving Infeasibility in Flux Balance Analysis of Metabolic Networks.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 7, p. N.PAG, doi. 10.3390/metabo12070585

By:

Klamt, Steffen;
von Kamp, Axel

Publication type:

Article

Reconstruction of the Genome-Scale Metabolic Model of Saccharopolyspora erythraea and Its Application in the Overproduction of Erythromycin.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 6, p. 509, doi. 10.3390/metabo12060509

By:

Xu, Feng;
Lu, Ju;
Ke, Xiang;
Shao, Minghao;
Huang, Mingzhi;
Chu, Ju

Publication type:

Article

MetAMDB: Metabolic Atom Mapping Database.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 2, p. N.PAG, doi. 10.3390/metabo12020122

By:

Starke, Collin;
Wegner, Andre

Publication type:

Article

Correcting for Naturally Occurring Mass Isotopologue Abundances in Stable-Isotope Tracing Experiments with PolyMID.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 5, p. 310, doi. 10.3390/metabo11050310

By:

Jeong, Heesoo;
Yu, Yan;
Johansson, Henrik J.;
Schroeder, Frank C.;
Lehtiö, Janne;
Vacanti, Nathaniel M.;
Divakaruni, Ajit;
Wallace, Martina

Publication type:

Article

In Vivo Estimation of Ketogenesis Using Metabolic Flux Analysis—Technical Aspects and Model Interpretation.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 5, p. 279, doi. 10.3390/metabo11050279

By:

Deja, Stanislaw;
Kucejova, Blanka;
Fu, Xiaorong;
Browning, Jeffrey D.;
Young, Jamey D.;
Burgess, Shawn;
Lorkiewicz, Pawel

Publication type:

Article

13 C Metabolic Flux Analysis Indicates Endothelial Cells Attenuate Metabolic Perturbations by Modulating TCA Activity.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 4, p. 226, doi. 10.3390/metabo11040226

By:

Moiz, Bilal;
Garcia, Jonathan;
Basehore, Sarah;
Sun, Angela;
Li, Andrew;
Padmanabhan, Surya;
Albus, Kaitlyn;
Jang, Cholsoon;
Sriram, Ganesh;
Clyne, Alisa Morss

Publication type:

Article

In Vivo Metabolism of [1,6- 13 C 2 ]Glucose Reveals Distinct Neuroenergetic Functionality between Mouse Hippocampus and Hypothalamus.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 1, p. 50, doi. 10.3390/metabo11010050

By:

Cherix, Antoine;
Sonti, Rajesh;
Lanz, Bernard;
Lei, Hongxia

Publication type:

Article

Metabolic Flux Analysis—Linking Isotope Labeling and Metabolic Fluxes.

Published in:

Metabolites (2218-1989), 2020, v. 10, n. 11, p. 447, doi. 10.3390/metabo10110447

By:

Wang, Yujue;
Wondisford, Fredric E.;
Song, Chi;
Zhang, Teng;
Su, Xiaoyang

Publication type:

Article

Atom Identifiers Generated by a Neighborhood-Specific Graph Coloring Method Enable Compound Harmonization across Metabolic Databases.

Published in:

Metabolites (2218-1989), 2020, v. 10, n. 9, p. 368, doi. 10.3390/metabo10090368

By:

Jin, Huan;
Mitchell, Joshua M.;
Moseley, Hunter N. B.

Publication type:

Article

Sink/Source Balance of Leaves Influences Amino Acid Pools and Their Associated Metabolic Fluxes in Winter Oilseed Rape (Brassica napus L.).

Published in:

Metabolites (2218-1989), 2020, v. 10, n. 4, p. 150, doi. 10.3390/metabo10040150

By:

Dellero, Younès;
Heuillet, Maud;
Marnet, Nathalie;
Bellvert, Floriant;
Millard, Pierre;
Bouchereau, Alain

Publication type:

Article

Robust Moiety Model Selection Using Mass Spectrometry Measured Isotopologues.

Published in:

Metabolites (2218-1989), 2020, v. 10, n. 3, p. 118, doi. 10.3390/metabo10030118

By:

Jin, Huan;
Moseley, Hunter N.B.

Publication type:

Article

13C-Metabolic Flux Analysis in Developing Flax (Linum usitatissinum L.) Embryos to Understand Storage Lipid Biosynthesis.

Published in:

Metabolites (2218-1989), 2020, v. 10, n. 1, p. 14, doi. 10.3390/metabo10010014

By:

Acket, Sébastien;
Degournay, Anthony;
Rossez, Yannick;
Mottelet, Stéphane;
Villon, Pierre;
Troncoso-Ponce, Adrian;
Thomasset, Brigitte

Publication type:

Article

Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis.

Published in:

Metabolites (2218-1989), 2018, v. 8, n. 1, p. 3, doi. 10.3390/metabo8010003

By:

Backman, Tyler W. H.;
Ando, David;
Singh, Jahnavi;
Keasling, Jay D.;
García Martín, Héctor

Publication type:

Article

Cell-Type Specific Metabolic Flux Analysis: A Challenge for Metabolic Phenotyping and a Potential Solution in Plants.

Published in:

Metabolites (2218-1989), 2017, v. 7, n. 4, p. 59, doi. 10.3390/metabo7040059

By:

Rossi, Merja T.;
Kalde, Monika;
Srisakvaraku, Chaiyakorn;
Kruger, Nicholas J.;
Ratcliffe, R. George

Publication type:

Article

Hypoxia-Inducible Factor–Prolyl Hydroxylase Inhibitor Improves Leukocyte Energy Metabolism in Hereditary Hemorrhagic Telangiectasia.

Published in:

Life (2075-1729), 2023, v. 13, n. 8, p. 1708, doi. 10.3390/life13081708

By:

Schild, Yves;
Bosserhoff, Jonah;
Droege, Freya;
Littwitz-Salomon, Elisabeth;
Fandrey, Joachim;
Wrobeln, Anna

Publication type:

Article

Sphingolipid Long-Chain Base Phosphate Degradation Can Be a Rate-Limiting Step in Long-Chain Base Homeostasis.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.911073

By:

Lambour, Benjamin;
Glenz, René;
Forner, Carmen;
Krischke, Markus;
Mueller, Martin J.;
Fekete, Agnes;
Waller, Frank

Publication type:

Article

Probing Light-Dependent Regulation of the Calvin Cycle Using a Multi-Omics Approach.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.733122

By:

Yu King Hing, Nathaphon;
Aryal, Uma K.;
Morgan, John A.

Publication type:

Article

Entner-Doudoroff pathway in Synechocystis PCC 6803: Proposed regulatory roles and enzyme multifunctionalities.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.967545

By:

Bachhar, Anushree;
Jablonsky, Jiri

Publication type:

Article

Metabolic engineering of E. coli for the production of O-succinyl-L-homoserine with high yield.

Published in:

3 Biotech, 2018, v. 8, n. 7, p. 1, doi. 10.1007/s13205-018-1332-x

By:

Huang, Jian-Feng;
Zhang, Bo;
Shen, Zhen-Yang;
Liu, Zhi-Qiang;
Zheng, Yu-Guo

Publication type:

Article