Works matching IS 03051048 AND DT 2006 AND VI 34 AND IP 3

Results: 40

A translation control reporter system (TCRS) for the analysis of translationally controlled processes in the vertebrate cell.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e23, doi. 10.1093/nar/gnj029

By:

Wiesenthal, Volker;
Leutz, Achim;
Calkhoven, Cornelis F.

Publication type:

Article

High-throughput trapping of secretory pathway genes in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e25, doi. 10.1093/nar/gnj026

By:

De-Zolt, Silke;
Schnütgen, Frank;
Seisenberger, Claudia;
Hansen, Jens;
Hollatz, Melanie;
Floss, Thomas;
Ruiz, Patricia;
Wurst, Wolfgang;
von Melchner, Harald

Publication type:

Article

Affinity selection of DNA-binding protein complexes using mRNA display.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e27, doi. 10.1093/nar/gnj025

By:

Tateyama, Seiji;
Horisawa, Kenichi;
Takashima, Hideaki;
Miyamoto-Sato, Etsuko;
Doi, Nobuhide;
Yanagawa, Hiroshi

Publication type:

Article

On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e26, doi. 10.1093/nar/gnj024

By:

Wick, Lukas M.;
Rouillard, Jean Marie;
Whittam, Thomas S.;
Gulari, Erdogan;
Tiedje, James M.;
Hashsham, Syed A.

Publication type:

Article

BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e22, doi. 10.1093/nar/gnj023

By:

Fedurco, Milan;
Romieu, Anthony;
Williams, Scott;
Lawrence, Isabelle;
Turcatti, Gerardo

Publication type:

Article

Combination of methylated-DNA precipitation and methylation-sensitive restriction enzymes (COMPARE-MS) for the rapid, sensitive and quantitative detection of DNA methylation.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e19, doi. 10.1093/nar/gnj022

By:

Yegnasubramanian, Srinivasan;
Lin, Xiaohui;
Haffner, Michael C.;
DeMarzo, Angelo M.;
Nelson, William G.

Publication type:

Article

SNP genotyping using alkali cleavage of RNA/DNA chimeras and MALDI time-of-flight mass spectrometry.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e18, doi. 10.1093/nar/gnj021

By:

Mauger, Florence;
Jaunay, Olivier;
Chamblain, Valérie;
Reichert, Fred;
Bauer, Keith;
Gut, Ivo G.;
Gelfand, David H.

Publication type:

Article

Diels-Alder cycloadditions in water for the straightforward preparation of peptide–oligonucleotide conjugates.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e24, doi. 10.1093/nar/gnj020

By:

Marchán, Vicente;
Ortega, Samuel;
Pulido, Daniel;
Pedroso, Enrique;
Grandas, Anna

Publication type:

Article

Expression of Cre recombinase during transient phage infection permits efficient marker removal in Streptomyces.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e20, doi. 10.1093/nar/gnj019

By:

Khodakaramian, Gholam;
Lissenden, Sarah;
Gust, Bertolt;
Moir, Laura;
Hoskisson, Paul A.;
Chater, Keith F.;
Smith, Margaret C. M.

Publication type:

Article

Isolation of a site-specifically modified RNA from an unmodified transcript.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e21, doi. 10.1093/nar/gnj018

By:

Hou, Ya-Ming;
Li, Zhi;
Gamper, Howard

Publication type:

Article

Accurate quantification of DNA methylation using combined bisulfite restriction analysis coupled with the Agilent 2100 Bioanalyzer platform.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. e17, doi. 10.1093/nar/gnj017

By:

Brena, Romulo Martin;
Auer, Herbert;
Kornacker, Karl;
Hackanson, Björn;
Raval, Aparna;
Byrd, John C.;
Plass, Christoph

Publication type:

Article

Structure-specific binding of MeCP2 to four-way junction DNA through its methyl CpG-binding domain.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 1081, doi. 10.1093/nar/gkj513

By:

Galvão, Teca Calcagno;
Thomas, Jean O.

Publication type:

Article

Poly(ADP-RIBOSE) polymerase-1 (Parp-1) antagonizes topoisomerase I-dependent recombination stimulation by P53.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 1036, doi. 10.1093/nar/gkj509

By:

Baumann, Cindy;
Boehden, Gisa S.;
Bürkle, Alexander;
Wiesmüller, Lisa

Publication type:

Article

Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 1082, doi. 10.1093/nar/gkj506

By:

Fisher, Robert J.;
Fivash, Matthew J.;
Stephen, Andrew G.;
Hagan, Nathan A.;
Shenoy, Shilpa R.;
Medaglia, Maxine V.;
Smith, Lindsey R.;
Worthy, Karen M.;
Simpson, John T.;
Shoemaker, Robert;
McNitt, Karen L.;
Johnson, Donald G.;
Hixson, Catherine V.;
Gorelick, Robert J.;
Fabris, Daniele;
Henderson, Louis E.;
Rein, Alan

Publication type:

Article

Roles for Gcn5p and Ada2p in transcription and nucleotide excision repair at the Saccharomyces cerevisiae MET16 gene.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 976, doi. 10.1093/nar/gkj501

By:

Ferreiro, J. A.;
Powell, N. G.;
Karabetsou, N.;
Mellor, J.;
Waters, R.

Publication type:

Article

Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 996, doi. 10.1093/nar/gkj499

By:

Nygaard, Vigdis;
Hovig, Eivind

Publication type:

Article

Changes in DNA bending and flexing due to tethered cations detected by fluorescence resonance energy transfer.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 1028, doi. 10.1093/nar/gkj498

By:

Williams, Sarah L.;
Parkhurst, Laura K.;
Parkhurst, Lawrence J.

Publication type:

Article

Core requirements for glmS ribozyme self-cleavage reveal a putative pseudoknot structure.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 968, doi. 10.1093/nar/gkj497

By:

Soukup, Garrett A.

Publication type:

Article

Computational inference and experimental validation of the nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH 8102.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 1050

By:

Su, Zhengchang;
Mao, Fenglou;
Dam, Phuongan;
Wu, Hongwei;
Olman, Victor;
Paulsen, Ian T.;
Palenik, Brian;
Xu, Ying

Publication type:

Article

Haploinsufficiency of the Mus81–Eme1 endonuclease activates the intra-S-phase and G2/M checkpoints and promotes rereplication in human cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 880, doi. 10.1093/nar/gkj495

By:

Hiyama, Takashi;
Katsura, Mari;
Yoshihara, Takashi;
Ishida, Mari;
Kinomura, Aiko;
Tonda, Tetsuji;
Asahara, Toshimasa;
Miyagawa, Kiyoshi

Publication type:

Article

Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 1066, doi. 10.1093/nar/gkj494

By:

Marsden, Russell L.;
Lee, David;
Maibaum, Michael;
Yeats, Corin;
Orengo, Christine A.

Publication type:

Article

Transcriptional activators in yeast.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 955, doi. 10.1093/nar/gkj493

By:

Titz, Björn;
Thomas, Sindhu;
Rajagopala, Seesandra V.;
Chiba, Tomoko;
Ito, Takashi;
Uetz, Peter

Publication type:

Article

Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 986, doi. 10.1093/nar/gkj492

By:

Graindorge, Antoine;
Thuret, Raphaël;
Pollet, Nicolas;
Osborne, H. Beverley;
Audic, Yann

Publication type:

Article

Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 865, doi. 10.1093/nar/gkj491

By:

Oliva, Romina;
Cavallo, Luigi;
Tramontano, Anna

Publication type:

Article

The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: implications for retrotransposition.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 853

By:

Li, Patrick Wai-Lun;
Li, Jinfang;
Timmerman, Stephanie L.;
Krushel, Les A.;
Martin, Sandra L.

Publication type:

Article

Molecular models for the tissue specificity of DNA mismatch repair-deficient carcinogenesis.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 840, doi. 10.1093/nar/gkj489

By:

Chao, Elizabeth C.;
Lipkin, Steven M.

Publication type:

Article

tRNA properties help shape codon pair preferences in open reading frames.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 1015, doi. 10.1093/nar/gkj488

By:

Buchan, J. Ross;
Aucott, Lorna S.;
Stansfield, Ian

Publication type:

Article

Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 917

By:

Yu, Xueping;
Lin, Jimmy;
Masuda, Tomohiro;
Esumi, Noriko;
Zack, Donald J.;
Qian, Jiang

Publication type:

Article

Dimerization of the bacterial RsrI N6-adenine DNA methyltransferase.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 806, doi. 10.1093/nar/gkj486

By:

Thomas, Chad B.;
Gumport, Richard I.

Publication type:

Article

Formation of the G-quadruplex and i-motif structures in retinoblastoma susceptibility genes (Rb).

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 949

By:

Xu, Yan;
Sugiyama, Hiroshi

Publication type:

Article

DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 939, doi. 10.1093/nar/gkj484

By:

Horton, John R.;
Zhang, Xing;
Maunus, Robert;
Yang, Zhe;
Wilson, Geoffrey G.;
Roberts, Richard J.;
Cheng, Xiaodong

Publication type:

Article

Engineering a rare-cutting restriction enzyme: genetic screening and selection of NotI variants.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 796, doi. 10.1093/nar/gkj483

By:

Samuelson, James C.;
Morgan, Richard D.;
Benner, Jack S.;
Claus, Toby E.;
Packard, Stephanie L.;
Xu, Shuang-yong

Publication type:

Article

Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5–aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 826, doi. 10.1093/nar/gkj482

By:

Manival, Xavier;
Charron, Christophe;
Fourmann, Jean-Baptiste;
Godard, François;
Charpentier, Bruno;
Branlant, Christiane

Publication type:

Article

Structure of the Tetrahymena thermophila telomerase RNA helix II template boundary element.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 816, doi. 10.1093/nar/gkj481

By:

Richards, Rebecca J.;
Theimer, Carla A.;
Finger, L. David;
Feigon, Juli

Publication type:

Article

A new anti conformation for N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (AAF-dG) allows Watson–Crick pairing in the Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4).

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 785, doi. 10.1093/nar/gkj479

By:

Wang, Lihua;
Broyde, Suse

Publication type:

Article

Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 905, doi. 10.1093/nar/gkj478

By:

Freyhult, Eva;
Moulton, Vincent;
Ardell, David H.

Publication type:

Article

Mechanisms of transcriptional repression of cell-cycle G2/M promoters by p63.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 928, doi. 10.1093/nar/gkj477

By:

Testoni, Barbara;
Mantovani, Roberto

Publication type:

Article

HelF, a putative RNA helicase acts as a nuclear suppressor of RNAi but not antisense mediated gene silencing.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 773, doi. 10.1093/nar/gkj465

By:

Popova, Blagovesta;
Kuhlmann, Markus;
Hinas, Andrea;
Söderbom, Fredrik;
Nellen, Wolfgang

Publication type:

Article

Coordinated changes of histone modifications and HDAC mobilization regulate the induction of MHC class II genes by Trichostatin A.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 765, doi. 10.1093/nar/gkj462

By:

Gialitakis, Manolis;
Kretsovali, Androniki;
Spilianakis, Charalampos;
Kravariti, Lara;
Mages, Jörg;
Hoffmann, Reinhard;
Hatzopoulos, Antonis K.;
Papamatheakis, Joseph

Publication type:

Article

TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 893, doi. 10.1093/nar/gkj449

By:

Ardell, David H.;
Andersson, Siv G. E.

Publication type:

Article