Works matching IS 03051048 AND DT 2003 AND VI 31 AND IP 23

Results: 44

Expression profiling via novel multiplex assay allows rapid assessment of gene regulation in defined signalling pathways.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. e153, doi. 10.1093/nar/gng153

By:

Eldering, Eric;
Spek, C. Arnold;
Aberson, Hella L.;
Grummels, Annette;
Derks, Ingrid A.;
de Vos, Alex F.;
McElgunn, Cathal J.;
Schouten, Jan P.

Publication type:

Article

Suppression of gene expression by a cell‐permeable Tet repressor.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. e152, doi. 10.1093/nar/gng152

By:

Mortlock, Alison;
Low, Walter;
Crisanti, Andrea

Publication type:

Article

Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. e151, doi. 10.1093/nar/gng151

By:

Baum, Michael;
Bielau, Simone;
Rittner, Nicole;
Schmid, Kathrin;
Eggelbusch, Kathrin;
Dahms, Michael;
Schlauersbach, Andrea;
Tahedl, Harald;
Beier, Markus;
Güimil, Ramon;
Scheffler, Matthias;
Hermann, Carsten;
Funk, Jörg‐Michael;
Wixmerten, Anke;
Rebscher, Hans;
Hönig, Matthias;
Andreae, Claas;
Büchner, Daniel;
Moschel, Erich;
Glathe, Andreas

Publication type:

Article

Direct measurement of the melting temperature of supported DNA by electrochemical method.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. e150

By:

Meunier‐Prest, Rita;
Raveau, Suzanne;
Finot, Eric;
Legay, Guillaume;
Cherkaoui‐Malki, Mustapha;
Latruffe, Norbert

Publication type:

Article

Improved detection of differentially expressed genes in microarray experiments through multiple scanning and image integration.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. e149, doi. 10.1093/nar/gng149

By:

Romualdi, Chiara;
Trevisan, Silvia;
Celegato, Barbara;
Costa, Germano;
Lanfranchi, Gerolamo

Publication type:

Article

Real‐time monitoring of nucleic acid ligation in homogenous solutions using molecular beacons.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. e148, doi. 10.1093/nar/gng146

By:

Tang, Zhiwen;
Wang, Kemin;
Tan, Weihong;
Li, Jun;
Liu, Lingfeng;
Guo, Qiuping;
Meng, Xiangxian;
Ma, Changbei;
Huang, Shasheng

Publication type:

Article

Corrigenda.

Published in:: Nucleic Acids Research, 2003, v. 31, n. 23, p. 7057, doi. 10.1093/nar/gkg940
Publication type:: Article

Interleukin‐6 represses the transcription of the CCAAT/enhancer binding protein‐α gene in hepatoma cells by inhibiting its ability to autoactivate the proximal promoter region.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6722, doi. 10.1093/nar/gkg861

By:

Foka, Pelagia;
Irvine, Scott A.;
Kockar, Feray;
Ramji, Dipak P.

Publication type:

Article

Structure‐specific binding of the proto‐oncogene protein DEK to DNA.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 7003, doi. 10.1093/nar/gkg864

By:

Waldmann, Tanja;
Baack, Martina;
Richter, Nicole;
Gruss, Claudia

Publication type:

Article

Improving gene annotation of complete viral genomes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 7041, doi. 10.1093/nar/gkg878

By:

Mills, Ryan;
Rozanov, Michael;
Lomsadze, Alexandre;
Tatusova, Tatiana;
Borodovsky, Mark

Publication type:

Article

Computational identification of the Spo0A‐phosphate regulon that is essential for the cellular differentiation and development in Gram‐positive spore‐forming bacteria.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6891, doi. 10.1093/nar/gkg879

By:

Liu, Jiajian;
Tan, Kai;
Stormo, Gary D.

Publication type:

Article

Molecular dynamics simulations of RNA kissing–loop motifs reveal structural dynamics and formation of cation‐binding pockets.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6942, doi. 10.1093/nar/gkg880

By:

Réblová, Kamila;
Špačková, Nad’a;
Šponer, Judit E.;
Koča, Jaroslav;
Šponer, Jiří

Publication type:

Article

Two‐metal ion mechanism of RNA cleavage by HIV RNase H and mechanism‐based design of selective HIV RNase H inhibitors.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6852, doi. 10.1093/nar/gkg881

By:

Klumpp, Klaus;
Hang, Julie Qi;
Rajendran, Surendran;
Yang, Yanli;
Derosier, Andre;
Wong Kai In, Philippe;
Overton, Hilary;
Parkes, Kevin E. B.;
Cammack, Nick;
Martin, Joseph A.

Publication type:

Article

Conservation of DNA curvature signals in regulatory regions of prokaryotic genes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6770, doi. 10.1093/nar/gkg882

By:

Jáuregui, Ruy;
Abreu‐Goodger, Cei;
Moreno‐Hagelsieb, Gabriel;
Collado‐Vides, Julio;
Merino, Enrique

Publication type:

Article

High mobility group A2 protein and its derivatives bind a specific region of the promoter of DNA repair gene ERCC1 and modulate its activity.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6841, doi. 10.1093/nar/gkg884

By:

Borrmann, Lars;
Schwanbeck, Ralf;
Heyduk, Tomasz;
Seebeck, Birte;
Rogalla, Piere;
Bullerdiek, Jörn;
Wiśniewski, Jacek R.

Publication type:

Article

A key role for the mRNA leader structure in translational control of ribosomal protein S1 synthesis in γ‐proteobacteria.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6996, doi. 10.1093/nar/gkg883

By:

Tchufistova, Ludmila S.;
Komarova, Anastassia V.;
Boni, Irina V.

Publication type:

Article

Mastering seeds for genomic size nucleotide BLAST searches.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6935, doi. 10.1093/nar/gkg886

By:

Gotea, Valer;
Veeramachaneni, Vamsi;
Makałowski, Wojciech

Publication type:

Article

Hairpin–duplex equilibrium reflected in the A→B transition in an undecamer quasi‐palindrome present in the locus control region of the human β‐globin gene cluster.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6904, doi. 10.1093/nar/gkg887

By:

Kaushik, Mahima;
Kukreti, Ritushree;
Grover, Deepak;
Brahmachari, Samir K.;
Kukreti, Shrikant

Publication type:

Article

Exhaustive identification of interaction domains using a high‐throughput method based on two‐hybrid screening and PCR‐convergence: molecular dissection of a kinetochore subunit Spc34p.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6953, doi. 10.1093/nar/gkg888

By:

Ikeuchi, Akinori;
Sasaki, Yoko;
Kawarasaki, Yasuaki;
Yamane, Tsuneo

Publication type:

Article

Solution structure and DNA binding of the effector domain from the global regulator PrrA (RegA) from Rhodobacter sphaeroides: insights into DNA binding specificity.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6778, doi. 10.1093/nar/gkg891

By:

Laguri, Cédric;
Phillips‐Jones, Mary K.;
Williamson, Michael P.

Publication type:

Article

Sensing DNA damage by PARP‐like fingers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6689, doi. 10.1093/nar/gkg890

By:

Petrucco, Stefania

Publication type:

Article

Repair of single‐strand DNA interruptions by redundant pathways and its implication in cellular sensitivity to DNA‐damaging agents.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 7032

By:

Ho, Erick L. Y.;
Satoh, Masahiko S.

Publication type:

Article

L‐nucleotides and 8‐methylguanine of d(C1m8G2C3G4C5LG6LC7G8C9G10)2 act cooperatively to promote a left‐handed helix under physiological salt conditions.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6986, doi. 10.1093/nar/gkg893

By:

Cherrak, Ilham;
Mauffret, Olivier;
Santamaria, Fanny;
Hocquet, Alexandre;
Ghomi, Mahmoud;
Rayner, Bernard;
Fermandjian, Serge

Publication type:

Article

Identifying cooperativity among transcription factors controlling the cell cycle in yeast.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 7024, doi. 10.1093/nar/gkg894

By:

Banerjee, Nilanjana;
Zhang, Michael Q.

Publication type:

Article

Functional characterization of Helicobacter pylori DnaB helicase.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6828, doi. 10.1093/nar/gkg895

By:

Soni, Rajesh K.;
Mehra, Parul;
Choudhury, Nirupam Roy;
Mukhopadhyay, Gauranga;
Dhar, Suman Kumar

Publication type:

Article

Mutagenesis of human DNA polymerase λ: essential roles of Tyr505 and Phe506 for both DNA polymerase and terminal transferase activities.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6916, doi. 10.1093/nar/gkg896

By:

Shevelev, Igor;
Blanca, Giuseppina;
Villani, Giuseppe;
Ramadan, Kristijan;
Spadari, Silvio;
Hübscher, Ulrich;
Maga, Giovanni

Publication type:

Article

Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K‐12 genome.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6976, doi. 10.1093/nar/gkg897

By:

dos Reis, Mario;
Wernisch, Lorenz;
Savva, Renos

Publication type:

Article

Mutagenic stress modulates the dynamics of CTG repeat instability associated with myotonic dystrophy type 1.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6733, doi. 10.1093/nar/gkg898

By:

Piñeiro, Elisabeth;
Fernàndez‐López, Laura;
Gamez, Josep;
Marcos, Ricard;
Surrallés, Jordi;
Velázquez, Antonia

Publication type:

Article

Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6748, doi. 10.1093/nar/gkg900

By:

Rodionov, Dmitry A.;
Vitreschak, Alexey G.;
Mironov, Andrey A.;
Gelfand, Mikhail S.

Publication type:

Article

Ribosomal proteins Rps0 and Rps21 of Saccharomyces cerevisiae have overlapping functions in the maturation of the 3′ end of 18S rRNA.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6798

By:

Tabb‐Massey, Amy;
Caffrey, Jacqueline M.;
Logsden, Paula;
Taylor, Stephen;
Trent, John O.;
Ellis, Steven R.

Publication type:

Article

A novel approach to describe a U1 snRNA binding site.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6963, doi. 10.1093/nar/gkg901

By:

Freund, Marcel;
Asang, Corinna;
Kammler, Susanne;
Konermann, Carolin;
Krummheuer, Jörg;
Hipp, Marianne;
Meyer, Imke;
Gierling, Wolfram;
Theiss, Stephan;
Preuss, Thorsten;
Schindler, Detlev;
Kjems, Jørgen;
Schaal, Heiner

Publication type:

Article

An archaebacteria‐derived glutamyl‐tRNA synthetase and tRNA pair for unnatural amino acid mutagenesis of proteins in Escherichia coli.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6700, doi. 10.1093/nar/gkg903

By:

Santoro, Stephen W.;
Anderson, J. Christopher;
Lakshman, Vishva;
Schultz, Peter G.

Publication type:

Article

Genome‐wide analysis of gene expression regulated by the HAT cofactor Trrap in conditional knockout cells.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 7011, doi. 10.1093/nar/gkg902

By:

Herceg, Zdenko;
Li, Hai;
Cuenin, Cyrille;
Shukla, Vivek;
Radolf, Martin;
Steinlein, Peter;
Wang, Zhao‐Qi

Publication type:

Article

A complex pathway for 3′ processing of the yeast U3 snoRNA.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6788, doi. 10.1093/nar/gkg904

By:

Kufel, Joanna;
Allmang, Christine;
Verdone, Loredana;
Beggs, Jean;
Tollervey, David

Publication type:

Article

Synergistic activation of the human orphan nuclear receptor SHP gene promoter by basic helix–loop–helix protein E2A and orphan nuclear receptor SF‐1.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6860, doi. 10.1093/nar/gkg906

By:

Kim, Han‐Jong;
Kim, Joon‐Young;
Park, Yun‐Yong;
Choi, Hueng‐Sik

Publication type:

Article

Chromatin acetylation and remodeling at the Cis promoter during STAT5‐induced transcription.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6882, doi. 10.1093/nar/gkg907

By:

Rascle, Anne;
Lees, Emma

Publication type:

Article

The common and the distinctive features of the bulged‐G motif based on a 1.04 Å resolution RNA structure.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6806, doi. 10.1093/nar/gkg908

By:

Correll, Carl C.;
Beneken, Jutta;
Plantinga, Matthew J.;
Lubbers, Melissa;
Chan, Yuen‐Ling

Publication type:

Article

Dynamic methylation of histone H3 at lysine 4 in transcriptional regulation by the androgen receptor.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6741, doi. 10.1093/nar/gkg909

By:

Kim, Joshua;
Jia, Li;
Tilley, Wayne D.;
Coetzee, Gerhard A.

Publication type:

Article

The Frog Prince: a reconstructed transposon from Rana pipiens with high transpositional activity in vertebrate cells.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6873, doi. 10.1093/nar/gkg910

By:

Miskey, Csaba;
Izsvák, Zsuzsanna;
Plasterk, Ronald H.;
Ivics, Zoltán

Publication type:

Article

Cleavage of DNA without loss of genetic information by incorporation of a disaccharide nucleoside.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6758, doi. 10.1093/nar/gkg911

By:

Nauwelaerts, Koen;
Vastmans, Karen;
Froeyen, Matheus;
Kempeneers, Veerle;
Rozenski, Jef;
Rosemeyer, Helmut;
Van Aerschot, Arthur;
Busson, Roger;
Lacey, Jeffrey C.;
Efimtseva, Ekaterina;
Mikhailov, Sergey;
Lescrinier, Eveline;
Herdewijn, Piet

Publication type:

Article

Transient XylR binding to the UAS of the Pseudomonas putida σ54 promoter Pu revealed with high intensity UV footprinting in vivo.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6926, doi. 10.1093/nar/gkg912

By:

Valls, Marc;
de Lorenzo, Víctor

Publication type:

Article

Dynamics of the metal‐dependent transcription factor complex in vivo at the mouse metallothionein‐I promoter.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6710, doi. 10.1093/nar/gkg913

By:

Daniels, Patrick J.;
Andrews, Glen K.

Publication type:

Article

Corrigenda.

Published in:: Nucleic Acids Research, 2003, v. 31, n. 23, p. 7056, doi. 10.1093/nar/gkg939
Publication type:: Article

DNA‐PK is activated by nucleosomes and phosphorylates H2AX within the nucleosomes in an acetylation‐dependent manner.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 23, p. 6819, doi. 10.1093/nar/gkg921

By:

Park, Eun‐Jung;
Chan, Doug W.;
Park, Ji‐Hye;
Oettinger, Marjorie A.;
Kwon, Jongbum

Publication type:

Article