Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 17

Results: 44

Systematic minimization of RNA ligase ribozyme through large-scale design-synthesis-sequence cycles.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 8950, doi. 10.1093/nar/gkz729

By:

Nomura, Yoko;
Yokobayashi, Yohei

Publication type:

Article

Structural characterization of Class 2 OLD family nucleases supports a two-metal catalysis mechanism for cleavage.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9448, doi. 10.1093/nar/gkz703

By:

Schiltz, Carl J;
Lee, April;
Partlow, Edward A;
Hosford, Christopher J;
Chappie, Joshua S

Publication type:

Article

RNA degradomes reveal substrates and importance for dark and nitrogen stress responses of Arabidopsis XRN4.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9216, doi. 10.1093/nar/gkz712

By:

Nagarajan, Vinay K;
Kukulich, Patrick M;
von Hagel, Bryan;
Green, Pamela J

Publication type:

Article

eRF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9243, doi. 10.1093/nar/gkz710

By:

Yang, Qian;
Yu, Chien-Hung;
Zhao, Fangzhou;
Dang, Yunkun;
Wu, Cheng;
Xie, Pancheng;
Sachs, Matthew S;
Liu, Yi

Publication type:

Article

DNA polymerase activity on synthetic N3′→P5′ phosphoramidate DNA templates.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 8941, doi. 10.1093/nar/gkz707

By:

Lelyveld, Victor S;
O'Flaherty, Derek K;
Zhou, Lijun;
Izgu, Enver Cagri;
Szostak, Jack W

Publication type:

Article

Reconstructing complex lineage trees from scRNA-seq data using MERLoT.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 8961, doi. 10.1093/nar/gkz706

By:

Parra, R Gonzalo;
Papadopoulos, Nikolaos;
Ahumada-Arranz, Laura;
Kholtei, Jakob El;
Mottelson, Noah;
Horokhovsky, Yehor;
Treutlein, Barbara;
Soeding, Johannes

Publication type:

Article

The structure of the TsaB/TsaD/TsaE complex reveals an unexpected mechanism for the bacterial t<sup>6</sup>A tRNA-modification.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9464, doi. 10.1093/nar/gkz719

By:

Missoury, Sophia;
Plancqueel, Stéphane;
Li de la Sierra-Gallay, Ines;
Zhang, Wenhua;
Liger, Dominique;
Durand, Dominique;
Dammak, Raoudha;
Collinet, Bruno;
van Tilbeurgh, Herman

Publication type:

Article

TrmB, a tRNA m<sup>7</sup>G46 methyltransferase, plays a role in hydrogen peroxide resistance and positively modulates the translation of katA and katB mRNAs in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9271, doi. 10.1093/nar/gkz702

By:

Thongdee, Narumon;
Jaroensuk, Juthamas;
Atichartpongkul, Sopapan;
Chittrakanwong, Jurairat;
Chooyoung, Kamonchanok;
Srimahaeak, Thanyaporn;
Chaiyen, Pimchai;
Vattanaviboon, Paiboon;
Mongkolsuk, Skorn;
Fuangthong, Mayuree

Publication type:

Article

The MLL1 trimeric catalytic complex is a dynamic conformational ensemble stabilized by multiple weak interactions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9433, doi. 10.1093/nar/gkz697

By:

Kaustov, Lilia;
Lemak, Alexander;
Wu, Hong;
Faini, Marco;
Fan, Lixin;
Fang, Xianyang;
Zeng, Hong;
Duan, Shili;
Allali-Hassani, Abdellah;
Li, Fengling;
Wei, Yong;
Vedadi, Masoud;
Aebersold, Ruedi;
Wang, Yunxing;
Houliston, Scott;
Arrowsmith, Cheryl H

Publication type:

Article

Adenovirus major core protein condenses DNA in clusters and bundles, modulating genome release and capsid internal pressure.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9231, doi. 10.1093/nar/gkz687

By:

Martín-González, Natalia;
Hernando-Pérez, Mercedes;
Condezo, Gabriela N;
Pérez-Illana, Marta;
Šiber, Antonio;
Reguera, David;
Ostapchuk, Philomena;
Hearing, Patrick;
San Martín, Carmen;
de Pablo, Pedro J

Publication type:

Article

C6orf203 is an RNA-binding protein involved in mitochondrial protein synthesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9386, doi. 10.1093/nar/gkz684

By:

Gopalakrishna, Shreekara;
Pearce, Sarah F;
Dinan, Adam M;
Schober, Florian A;
Cipullo, Miriam;
Spåhr, Henrik;
Khawaja, Anas;
Maffezzini, Camilla;
Freyer, Christoph;
Wredenberg, Anna;
Atanassov, Ilian;
Firth, Andrew E;
Rorbach, Joanna

Publication type:

Article

KSHV RNA-binding protein ORF57 inhibits P-body formation to promote viral multiplication by interaction with Ago2 and GW182.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9368, doi. 10.1093/nar/gkz683

By:

Sharma, Nishi R;
Majerciak, Vladimir;
Kruhlak, Michael J;
Yu, Lulu;
Kang, Jeong Gu;
Yang, Acong;
Gu, Shuo;
Fritzler, Marvin J;
Zheng, Zhi-Ming

Publication type:

Article

Structural basis of σ appropriation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9423, doi. 10.1093/nar/gkz682

By:

Shi, Jing;
Wen, Aijia;
Zhao, Minxing;
You, Linlin;
Zhang, Yu;
Feng, Yu

Publication type:

Article

Impacts of uORF codon identity and position on translation regulation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9358, doi. 10.1093/nar/gkz681

By:

Lin, Yizhu;
May, Gemma E;
Kready, Hunter;
Nazzaro, Lauren;
Mao, Mao;
Spealman, Pieter;
Creeger, Yehuda;
McManus, C Joel

Publication type:

Article

Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2′-guanosine.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9410, doi. 10.1093/nar/gkz680

By:

Kaminski, Andrea M;
Chiruvella, Kishore K;
Ramsden, Dale A;
Kunkel, Thomas A;
Bebenek, Katarzyna;
Pedersen, Lars C

Publication type:

Article

Highly efficacious antiviral protection of plants by small interfering RNAs identified in vitro.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9343, doi. 10.1093/nar/gkz678

By:

Gago-Zachert, Selma;
Schuck, Jana;
Weinholdt, Claus;
Knoblich, Marie;
Pantaleo, Vitantonio;
Grosse, Ivo;
Gursinsky, Torsten;
Behrens, Sven-Erik

Publication type:

Article

Cyclic oligoadenylate signalling mediates Mycobacterium tuberculosis CRISPR defence.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9259, doi. 10.1093/nar/gkz676

By:

Grüschow, Sabine;
Athukoralage, Januka S;
Graham, Shirley;
Hoogeboom, Tess;
White, Malcolm F

Publication type:

Article

Structure of the primed state of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9400, doi. 10.1093/nar/gkz670

By:

Chittori, Sagar;
Hong, Jingjun;
Bai, Yawen;
Subramaniam, Sriram

Publication type:

Article

A 212-nt long RNA structure in the Tobacco necrosis virus-D RNA genome is resistant to Xrn degradation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9329, doi. 10.1093/nar/gkz668

By:

Gunawardene, Chaminda D;
Newburn, Laura R;
White, K Andrew

Publication type:

Article

CtIP is essential for telomere replication.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 8927, doi. 10.1093/nar/gkz652

By:

Stroik, Susanna;
Kurtz, Kevin;
Hendrickson, Eric A

Publication type:

Article

SIRT6 transcriptionally regulates global protein synthesis through transcription factor Sp1 independent of its deacetylase activity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9115, doi. 10.1093/nar/gkz648

By:

Ravi, Venkatraman;
Jain, Aditi;
Khan, Danish;
Ahamed, Faiz;
Mishra, Sneha;
Giri, Malyasree;
Inbaraj, Meena;
Krishna, Swati;
Sarikhani, Mohsen;
Maity, Sangeeta;
Kumar, Shweta;
Shah, Riyaz Ahmad;
Dave, Pratik;
Pandit, Anwit S;
Rajendran, Rajprabu;
Desingu, Perumal A;
Varshney, Umesh;
Das, Saumitra;
Kolthur-Seetharam, Ullas;
Rajakumari, Sona

Publication type:

Article

Bacillus subtilis RecA interacts with and loads RadA/Sms to unwind recombination intermediates during natural chromosomal transformation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9198, doi. 10.1093/nar/gkz647

By:

Torres, Rubén;
Serrano, Ester;
Alonso, Juan C

Publication type:

Article

Staufen1 and UPF1 exert opposite actions on the replacement of the nuclear cap-binding complex by eIF4E at the 5′ end of mRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9313, doi. 10.1093/nar/gkz643

By:

Jeong, Kwon;
Ryu, Incheol;
Park, Joori;
Hwang, Hyun Jung;
Ha, Hongseok;
Park, Yeonkyoung;
Oh, Sang Taek;
Kim, Yoon Ki

Publication type:

Article

Trypanosoma brucei ribonuclease H2A is an essential R-loop processing enzyme whose loss causes DNA damage during transcription initiation and antigenic variation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9180, doi. 10.1093/nar/gkz644

By:

Briggs, Emma;
Crouch, Kathryn;
Lemgruber, Leandro;
Hamilton, Graham;
Lapsley, Craig;
McCulloch, Richard

Publication type:

Article

Structural and phenotypic analysis of Chikungunya virus RNA replication elements.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9296, doi. 10.1093/nar/gkz640

By:

Kendall, Catherine;
Khalid, Henna;
Müller, Marietta;
Banda, Dominic H;
Kohl, Alain;
Merits, Andres;
Stonehouse, Nicola J;
Tuplin, Andrew

Publication type:

Article

CTCF cooperates with CtIP to drive homologous recombination repair of double-strand breaks.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9160, doi. 10.1093/nar/gkz639

By:

Hwang, Soon Young;
Kang, Mi Ae;
Baik, Chul Joon;
Lee, Yejin;
Hang, Ngo Thanh;
Kim, Byung-Gyu;
Han, Joo Seok;
Jeong, Jae-Hoon;
Park, Daechan;
Myung, Kyungjae;
Lee, Jong-Soo

Publication type:

Article

Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9104, doi. 10.1093/nar/gkz636

By:

Taochy, Christelle;
Yu, Agnès;
Bouché, Nicolas;
Bouteiller, Nathalie;
Elmayan, Taline;
Dressel, Uwe;
Carroll, Bernard J;
Vaucheret, Hervé

Publication type:

Article

DREAM and RB cooperate to induce gene repression and cell-cycle arrest in response to p53 activation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9087, doi. 10.1093/nar/gkz635

By:

Uxa, Sigrid;
Bernhart, Stephan H;
Mages, Christina F S;
Fischer, Martin;
Kohler, Robin;
Hoffmann, Steve;
Stadler, Peter F;
Engeland, Kurt;
Müller, Gerd A

Publication type:

Article

Functional interplay between Mediator and RNA polymerase II in Rad2/XPG loading to the chromatin.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 8988, doi. 10.1093/nar/gkz598

By:

Georges, Adrien;
Gopaul, Diyavarshini;
Denby Wilkes, Cyril;
Giordanengo Aiach, Nathalie;
Novikova, Elizaveta;
Barrault, Marie-Bénédicte;
Alibert, Olivier;
Soutourina, Julie

Publication type:

Article

RNA polymerase II plays an active role in the formation of gene loops through the Rpb4 subunit.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 8975, doi. 10.1093/nar/gkz597

By:

Allepuz-Fuster, Paula;
O'Brien, Michael J;
González-Polo, Noelia;
Pereira, Bianca;
Dhoondia, Zuzer;
Ansari, Athar;
Calvo, Olga

Publication type:

Article

A low-complexity region in human XRN1 directly recruits deadenylation and decapping factors in 5′–3′ messenger RNA decay.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9282, doi. 10.1093/nar/gkz633

By:

Chang, Chung-Te;
Muthukumar, Sowndarya;
Weber, Ramona;
Levdansky, Yevgen;
Chen, Ying;
Bhandari, Dipankar;
Igreja, Catia;
Wohlbold, Lara;
Valkov, Eugene;
Izaurralde, Elisa

Publication type:

Article

SET8 prevents excessive DNA methylation by methylation-mediated degradation of UHRF1 and DNMT1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9053, doi. 10.1093/nar/gkz626

By:

Zhang, Huifang;
Gao, Qinqin;
Tan, Shuo;
You, Jia;
Lyu, Cong;
Zhang, Yunpeng;
Han, Mengmeng;
Chen, Zhaosu;
Li, Jialun;
Wang, Hailin;
Liao, Lujian;
Qin, Jun;
Li, Jiwen;
Wong, Jiemin

Publication type:

Article

Synthetic lethality between BRCA1 deficiency and poly(ADP-ribose) polymerase inhibition is modulated by processing of endogenous oxidative DNA damage.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9132, doi. 10.1093/nar/gkz624

By:

Giovannini, Sara;
Weller, Marie-Christine;
Repmann, Simone;
Moch, Holger;
Jiricny, Josef

Publication type:

Article

The NRPD1 N-terminus contains a Pol IV-specific motif that is critical for genome surveillance in Arabidopsis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9037, doi. 10.1093/nar/gkz618

By:

Ferrafiat, Laura;
Pflieger, David;
Singh, Jasleen;
Thieme, Michael;
Böhrer, Marcel;
Himber, Christophe;
Gerbaud, Aude;
Bucher, Etienne;
Pikaard, Craig S;
Blevins, Todd

Publication type:

Article

Rad5 dysregulation drives hyperactive recombination at replication forks resulting in cisplatin sensitivity and genome instability.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9144, doi. 10.1093/nar/gkz631

By:

Bryant, Eric E;
Šunjevarić, Ivana;
Berchowitz, Luke;
Rothstein, Rodney;
Reid, Robert J D

Publication type:

Article

Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9069, doi. 10.1093/nar/gkz627

By:

Cernilogar, Filippo M;
Hasenöder, Stefan;
Wang, Zeyang;
Scheibner, Katharina;
Burtscher, Ingo;
Sterr, Michael;
Smialowski, Pawel;
Groh, Sophia;
Evenroed, Ida M;
Gilfillan, Gregor D;
Lickert, Heiko;
Schotta, Gunnar

Publication type:

Article

The Pol IV largest subunit CTD quantitatively affects siRNA levels guiding RNA-directed DNA methylation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9024, doi. 10.1093/nar/gkz615

By:

Wendte, Jered M;
Haag, Jeremy R;
Pontes, Olga M;
Singh, Jasleen;
Metcalf, Sara;
Pikaard, Craig S

Publication type:

Article

Ultra-soft X-ray system for imaging the early cellular responses to X-ray induced DNA damage.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. e100, doi. 10.1093/nar/gkz609

By:

Kochan, Jakub A;
van den Belt, Matthias;
von der Lippe, Julia;
Desclos, Emilie C B;
Steurer, Barbara;
Hoebe, Ron A;
Scutigliani, Enzo M;
Verhoeven, Jan;
Stap, Jan;
Bosch, Ruben;
Rijpkema, Meindert;
van Oven, Carel;
van Veen, Henk A;
Stellingwerf, Irene;
Vriend, Lianne E M;
Marteijn, Jurgen A;
Aten, Jacob A;
Krawczyk, Przemek M

Publication type:

Article

KDM2 proteins constrain transcription from CpG island gene promoters independently of their histone demethylase activity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. 9005, doi. 10.1093/nar/gkz607

By:

Turberfield, Anne H;
Kondo, Takashi;
Nakayama, Manabu;
Koseki, Yoko;
King, Hamish W;
Koseki, Haruhiko;
Klose, Robert J

Publication type:

Article

Delivering Cas9/sgRNA ribonucleoprotein (RNP) by lentiviral capsid-based bionanoparticles for efficient 'hit-and-run' genome editing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. e99, doi. 10.1093/nar/gkz605

By:

Lyu, Pin;
Javidi-Parsijani, Parisa;
Atala, Anthony;
Lu, Baisong

Publication type:

Article

Novel enzymatic single-nucleotide modification of DNA oligomer: prevention of incessant incorporation of nucleotidyl transferase by ribonucleotide-borate complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. e102, doi. 10.1093/nar/gkz612

By:

Jang, Eui Kyoung;
Son, Ryeo Gang;
Pack, Seung Pil

Publication type:

Article

Single-molecule detection of deoxyribonucleoside triphosphates in microdroplets.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. e101, doi. 10.1093/nar/gkz611

By:

Breiner, Boris;
Johnson, Kerr;
Stolarek, Magdalena;
Silva, Ana-Luisa;
Negrea, Aurel;
Bell, Neil M;
Isaac, Tom H;
Dethlefsen, Mark;
Chana, Jasmin;
Ibbotson, Lindsey A;
Palmer, Rebecca N;
Bush, James;
Dunning, Alexander J;
Love, David M;
Pachoumi, Olympia;
Kelly, Douglas J;
Shibahara, Aya;
Wu, Mei;
Sosna, Maciej;
Dear, Paul H

Publication type:

Article

coMethDMR: accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies with continuous phenotypes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. e98, doi. 10.1093/nar/gkz590

By:

Gomez, Lissette;
Odom, Gabriel J;
Young, Juan I;
Martin, Eden R;
Liu, Lizhong;
Chen, Xi;
Griswold, Anthony J;
Gao, Zhen;
Zhang, Lanyu;
Wang, Lily

Publication type:

Article

Achieving tight control of a photoactivatable Cre recombinase gene switch: new design strategies and functional characterization in mammalian cells and rodent.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 17, p. e97, doi. 10.1093/nar/gkz585

By:

Meador, Kyle;
Wysoczynski, Christina L;
Norris, Aaron J;
Aoto, Jason;
Bruchas, Michael R;
Tucker, Chandra L

Publication type:

Article