Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 16

Results: 47

Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8375, doi. 10.1093/nar/gkz381

By:

Yang, Jie;
Horton, John R;
Li, Jia;
Huang, Yun;
Zhang, Xing;
Blumenthal, Robert M;
Cheng, Xiaodong

Publication type:

Article

Structural basis of specific DNA binding by the transcription factor ZBTB24.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8388, doi. 10.1093/nar/gkz557

By:

Ren, Ren;
Hardikar, Swanand;
Horton, John R;
Lu, Yue;
Zeng, Yang;
Singh, Anup K;
Lin, Kevin;
Coletta, Luis Della;
Shen, Jianjun;
Lin Kong, Celine Shuet;
Hashimoto, Hideharu;
Zhang, Xing;
Chen, Taiping;
Cheng, Xiaodong

Publication type:

Article

Super-resolution microscopy reveals how histone tail acetylation affects DNA compaction within nucleosomes in vivo.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8470, doi. 10.1093/nar/gkz593

By:

Otterstrom, Jason;
Castells-Garcia, Alvaro;
Vicario, Chiara;
Gomez-Garcia, Pablo A;
Cosma, Maria Pia;
Lakadamyali, Melike

Publication type:

Article

Complementary roles of Pif1 helicase and single stranded DNA binding proteins in stimulating DNA replication through G-quadruplexes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8595, doi. 10.1093/nar/gkz608

By:

Sparks, Melanie A;
Singh, Saurabh P;
Burgers, Peter M;
Galletto, Roberto

Publication type:

Article

Symmetric activity of DNA polymerases at and recruitment of exonuclease ExoR and of PolA to the Bacillus subtilis replication forks.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8521, doi. 10.1093/nar/gkz554

By:

Hernández-Tamayo, Rogelio;
Oviedo-Bocanegra, Luis M;
Fritz, Georg;
Graumann, Peter L

Publication type:

Article

Biogenesis of RNase P RNA from an intron requires co-assembly with cognate protein subunits.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8746, doi. 10.1093/nar/gkz572

By:

Palsule, Geeta;
Gopalan, Venkat;
Simcox, Amanda

Publication type:

Article

CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. e95, doi. 10.1093/nar/gkz543

By:

de Kanter, Jurrian K;
Lijnzaad, Philip;
Candelli, Tito;
Margaritis, Thanasis;
Holstege, Frank C P

Publication type:

Article

Citrus exocortis viroid causes ribosomal stress in tomato plants.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8649, doi. 10.1093/nar/gkz679

By:

Cottilli, Patrick;
Belda-Palazón, Borja;
Adkar-Purushothama, Charith Raj;
Perreault, Jean-Pierre;
Schleiff, Enrico;
Rodrigo, Ismael;
Ferrando, Alejandro;
Lisón, Purificación

Publication type:

Article

Cockayne syndrome group B deficiency reduces H3K9me3 chromatin remodeler SETDB1 and exacerbates cellular aging.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8548, doi. 10.1093/nar/gkz568

By:

Lee, Jong-Hyuk;
Demarest, Tyler G;
Babbar, Mansi;
Kim, Edward W;
Okur, Mustafa N;
De, Supriyo;
Croteau, Deborah L;
Bohr, Vilhelm A

Publication type:

Article

Translation-dependent unwinding of stem–loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8838, doi. 10.1093/nar/gkz628

By:

Mino, Takashi;
Iwai, Noriki;
Endo, Masayuki;
Inoue, Kentaro;
Akaki, Kotaro;
Hia, Fabian;
Uehata, Takuya;
Emura, Tomoko;
Hidaka, Kumi;
Suzuki, Yutaka;
Standley, Daron M;
Okada-Hatakeyama, Mariko;
Ohno, Shigeo;
Sugiyama, Hiroshi;
Yamashita, Akio;
Takeuchi, Osamu

Publication type:

Article

Completion of LINE integration involves an open '4-way' branched DNA intermediate.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8708, doi. 10.1093/nar/gkz673

By:

Khadgi, Brijesh B;
Govindaraju, Aruna;
Christensen, Shawn M

Publication type:

Article

Cooperative DNA binding by proteins through DNA shape complementarity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8874, doi. 10.1093/nar/gkz642

By:

Hancock, Stephen P;
Cascio, Duilio;
Johnson, Reid C

Publication type:

Article

Mammalian NSUN2 introduces 5-methylcytidines into mitochondrial tRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8734, doi. 10.1093/nar/gkz575

By:

Shinoda, Saori;
Kitagawa, Sho;
Nakagawa, Shinichi;
Wei, Fan-Yan;
Tomizawa, Kazuhito;
Araki, Kimi;
Araki, Masatake;
Suzuki, Takeo;
Suzuki, Tsutomu

Publication type:

Article

Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. e94, doi. 10.1093/nar/gkz536

By:

Kim, Donghyo;
Han, Seong Kyu;
Lee, Kwanghwan;
Kim, Inhae;
Kong, JungHo;
Kim, Sanguk

Publication type:

Article

Extensive transcriptional responses are co-ordinated by microRNAs as revealed by Exon–Intron Split Analysis (EISA).

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8606, doi. 10.1093/nar/gkz664

By:

Pillman, Katherine A;
Scheer, Kaitlin G;
Hackett-Jones, Emily;
Saunders, Klay;
Bert, Andrew G;
Toubia, John;
Whitfield, Holly J;
Sapkota, Sunil;
Sourdin, Laura;
Pham, Hoang;
Le, Thuc D;
Cursons, Joseph;
Davis, Melissa J;
Gregory, Philip A;
Goodall, Gregory J;
Bracken, Cameron P

Publication type:

Article

Functional interplay between DEAD-box RNA helicases Ded1 and Dbp1 in preinitiation complex attachment and scanning on structured mRNAs in vivo.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8785, doi. 10.1093/nar/gkz595

By:

Sen, Neelam Dabas;
Gupta, Neha;
K. Archer, Stuart;
Preiss, Thomas;
Lorsch, Jon R;
Hinnebusch, Alan G

Publication type:

Article

CRISPR DNA elements controlling site-specific spacer integration and proper repeat length by a Type II CRISPR–Cas system.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8632, doi. 10.1093/nar/gkz677

By:

Kim, Jenny G;
Garrett, Sandra;
Wei, Yunzhou;
Graveley, Brenton R;
Terns, Michael P

Publication type:

Article

Engineering DNA recognition and allosteric response properties of TetR family proteins by using a module-swapping strategy.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8913, doi. 10.1093/nar/gkz666

By:

Dimas, Rey P;
Jordan, Benjamin R;
Jiang, Xian-Li;
Martini, Catherine;
Glavy, Joseph S;
Patterson, Dustin P;
Morcos, Faruck;
Chan, Clement T Y

Publication type:

Article

WITER: a powerful method for estimation of cancer-driver genes using a weighted iterative regression modelling background mutation counts.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. e96, doi. 10.1093/nar/gkz566

By:

Jiang, Lin;
Zheng, Jingjing;
Kwan, Johnny S H;
Dai, Sheng;
Li, Cong;
Li, Mulin Jun;
Yu, Bolan;
TO, Ka F;
Sham, Pak C;
Zhu, Yonghong;
Li, Miaoxin

Publication type:

Article

Deconvolution of nucleic-acid length distributions: a gel electrophoresis analysis tool and applications.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. e92, doi. 10.1093/nar/gkz534

By:

Ziraldo, Riccardo;
Shoura, Massa J;
Fire, Andrew Z;
Levene, Stephen D

Publication type:

Article

Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8770, doi. 10.1093/nar/gkz583

By:

Qiu, Chen;
Dutcher, Robert C;
Porter, Douglas F;
Arava, Yoav;
Wickens, Marvin;
Hall, Traci M Tanaka

Publication type:

Article

DNA polymerase ζ in DNA replication and repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8348, doi. 10.1093/nar/gkz705

By:

Martin, Sara K;
Wood, Richard D

Publication type:

Article

Gcn5-mediated acetylation at MBF-regulated promoters induces the G1/S transcriptional wave.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8439, doi. 10.1093/nar/gkz561

By:

González-Medina, Alberto;
Hidalgo, Elena;
Ayté, José

Publication type:

Article

Enhancer-mediated enrichment of interacting JMJD3–DDX21 to ENPP2 locus prevents R-loop formation and promotes transcription.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8424, doi. 10.1093/nar/gkz560

By:

Argaud, Deborah;
Boulanger, Marie-Chloé;
Chignon, Arnaud;
Mkannez, Ghada;
Mathieu, Patrick

Publication type:

Article

The general mRNA exporters Mex67 and Mtr2 play distinct roles in nuclear export of tRNAs in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8620, doi. 10.1093/nar/gkz671

By:

Hegedűsová, Eva;
Kulkarni, Sneha;
Burgman, Brandon;
Alfonzo, Juan D;
Paris, Zdeněk

Publication type:

Article

HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. e91, doi. 10.1093/nar/gkz533

By:

Tarbell, Evan D;
Liu, Tao

Publication type:

Article

An improved method for circular RNA purification using RNase R that efficiently removes linear RNAs containing G-quadruplexes or structured 3′ ends.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8755, doi. 10.1093/nar/gkz576

By:

Xiao, Mei-Sheng;
Wilusz, Jeremy E

Publication type:

Article

Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3′ processing and transcription termination.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8452, doi. 10.1093/nar/gkz567

By:

Sanchez, Ana M;
Garg, Angad;
Shuman, Stewart;
Schwer, Beate

Publication type:

Article

Zika virus NS3 is a canonical RNA helicase stimulated by NS5 RNA polymerase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8693, doi. 10.1093/nar/gkz650

By:

Xu, Shan;
Ci, Yali;
Wang, Leijie;
Yang, Yang;
Zhang, Leiliang;
Xu, Caimin;
Qin, Chengfeng;
Shi, Lei

Publication type:

Article

Mechanism of allosteric activation of human mRNA cap methyltransferase (RNMT) by RAM: insights from accelerated molecular dynamics simulations.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8675, doi. 10.1093/nar/gkz613

By:

Bueren-Calabuig, Juan A;
G. Bage, Marcus;
Cowling, Victoria H;
Pisliakov, Andrei V

Publication type:

Article

Molecular affinity rulers: systematic evaluation of DNA aptamers for their applicabilities in ELISA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8362, doi. 10.1093/nar/gkz688

By:

Kimoto, Michiko;
Shermane Lim, Yun Wei;
Hirao, Ichiro

Publication type:

Article

MORC2 regulates DNA damage response through a PARP1-dependent pathway.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8502, doi. 10.1093/nar/gkz545

By:

Zhang, Lin;
Li, Da-Qiang

Publication type:

Article

Newly acquired N-terminal extension targets threonyl-tRNA synthetase-like protein into the multiple tRNA synthetase complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8662, doi. 10.1093/nar/gkz588

By:

Zhou, Xiao-Long;
Chen, Yun;
Zeng, Qi-Yu;
Ruan, Zhi-Rong;
Fang, Pengfei;
Wang, En-Duo

Publication type:

Article

A novel histone H4 variant H4G regulates rDNA transcription in breast cancer.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8399, doi. 10.1093/nar/gkz547

By:

Long, Mengping;
Sun, Xulun;
Shi, Wenjin;
Yanru, An;
Leung, Sophia T C;
Ding, Dongbo;
Cheema, Manjinder S;
MacPherson, Nicol;
Nelson, Christopher J;
Ausio, Juan;
Yan, Yan;
Ishibashi, Toyotaka

Publication type:

Article

NSUN2 introduces 5-methylcytosines in mammalian mitochondrial tRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8720, doi. 10.1093/nar/gkz559

By:

Van Haute, Lindsey;
Lee, Song-Yi;
McCann, Beverly J;
Powell, Christopher A;
Bansal, Dhiru;
Vasiliauskaitė, Lina;
Garone, Caterina;
Shin, Sanghee;
Kim, Jong-Seo;
Frye, Michaela;
Gleeson, Joseph G;
Miska, Eric A;
Rhee, Hyun-Woo;
Minczuk, Michal

Publication type:

Article

Polynucleotide phosphorylase promotes the stability and function of Hfq-binding sRNAs by degrading target mRNA-derived fragments.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8821, doi. 10.1093/nar/gkz616

By:

Cameron, Todd A;
Matz, Lisa M;
Sinha, Dhriti;
De Lay, Nicholas R

Publication type:

Article

The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8410, doi. 10.1093/nar/gkz549

By:

Cucinotta, Christine E;
Hildreth, A Elizabeth;
McShane, Brendan M;
Shirra, Margaret K;
Arndt, Karen M

Publication type:

Article

Nucleotide excision repair of abasic DNA lesions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8537, doi. 10.1093/nar/gkz558

By:

Kitsera, Nataliya;
Rodriguez-Alvarez, Marta;
Emmert, Steffen;
Carell, Thomas;
Khobta, Andriy

Publication type:

Article

Single-molecule visualization reveals the damage search mechanism for the human NER protein XPC-RAD23B.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8337, doi. 10.1093/nar/gkz629

By:

Cheon, Na Young;
Kim, Hyun-Suk;
Yeo, Jung-Eun;
Schärer, Orlando D;
Lee, Ja Yil

Publication type:

Article

Polymorphic G:G mismatches act as hotspots for inducing right-handed Z DNA by DNA intercalation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8899, doi. 10.1093/nar/gkz653

By:

Satange, Roshan;
Chuang, Chien-Ying;
Neidle, Stephen;
Hou, Ming-Hon

Publication type:

Article

Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8485, doi. 10.1093/nar/gkz594

By:

Zhang, Weiyu;
Chen, Fuquan;
Chen, Ruiqing;
Xie, Dan;
Yang, Jiao;
Zhao, Xin;
Guo, Renpeng;
Zhang, Yongwang;
Shen, Yang;
Göke, Jonathan;
Liu, Lin;
Lu, Xinyi

Publication type:

Article

A role for the Saccharomyces cerevisiae ABCF protein New1 in translation termination/recycling.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8807, doi. 10.1093/nar/gkz600

By:

Kasari, Villu;
Pochopien, Agnieszka A;
Margus, Tõnu;
Murina, Victoriia;
Turnbull, Kathryn;
Zhou, Yang;
Nissan, Tracy;
Graf, Michael;
Nováček, Jiří;
Atkinson, Gemma C;
Johansson, Marcus J O;
Wilson, Daniel N;
Hauryliuk, Vasili

Publication type:

Article

Sharp kinking of a coiled-coil in MutS allows DNA binding and release.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8888, doi. 10.1093/nar/gkz649

By:

Bhairosing-Kok, Doreth;
Groothuizen, Flora S;
Fish, Alexander;
Dharadhar, Shreya;
Winterwerp, Herrie H K;
Sixma, Titia K

Publication type:

Article

A PARP1–BRG1–SIRT1 axis promotes HR repair by reducing nucleosome density at DNA damage sites.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8563, doi. 10.1093/nar/gkz592

By:

Chen, Yu;
Zhang, Haiping;
Xu, Zhu;
Tang, Huanyin;
Geng, Anke;
Cai, Bailian;
Su, Tao;
Shi, Jiejun;
Jiang, Cizhong;
Tian, Xiao;
Seluanov, Andrei;
Huang, Jun;
Wan, Xiaoping;
Jiang, Ying;
Gorbunova, Vera;
Mao, Zhiyong

Publication type:

Article

SMARTer single cell total RNA sequencing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. e93, doi. 10.1093/nar/gkz535

By:

Verboom, Karen;
Everaert, Celine;
Bolduc, Nathalie;
Livak, Kenneth J;
Yigit, Nurten;
Rombaut, Dries;
Anckaert, Jasper;
Lee, Simon;
Venø, Morten T;
Kjems, Jørgen;
Speleman, Frank;
Mestdagh, Pieter;
Vandesompele, Jo

Publication type:

Article

Specificity of protein–DNA interactions in hypersaline environment: structural studies on complexes of Halobacterium salinarum oxidative stress-dependent protein hsRosR.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8860, doi. 10.1093/nar/gkz604

By:

Kutnowski, Nitzan;
Shmulevich, Fania;
Davidov, Geula;
Shahar, Anat;
Bar-Zvi, Dudy;
Eichler, Jerry;
Zarivach, Raz;
Shaanan, Boaz

Publication type:

Article

Are the intrinsically disordered linkers involved in SSB binding to accessory proteins?

Published in:

Nucleic Acids Research, 2019, v. 47, n. 16, p. 8581, doi. 10.1093/nar/gkz606

By:

Shinn, Min Kyung;
Kozlov, Alexander G;
Nguyen, Binh;
Bujalowski, Wlodek M;
Lohman, Timothy M

Publication type:

Article