Works matching IS 03051048 AND DT 2019 AND VI 47 AND IP 14

Results: 48

Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7276, doi. 10.1093/nar/gkz610

By:

Stadlbauer, Petr;
Kührová, Petra;
Vicherek, Lukáš;
Banáš, Pavel;
Otyepka, Michal;
Trantírek, Lukáš;
Šponer, Jiří

Publication type:

Article

Visualization and analysis of RNA-Seq assembly graphs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7262, doi. 10.1093/nar/gkz599

By:

Nazarie, Fahmi W;
Shih, Barbara;
Angus, Tim;
Barnett, Mark W;
Chen, Sz-Hau;
Summers, Kim M;
Klein, Karsten;
Faulkner, Geoffrey J;
Saini, Harpreet K;
Watson, Mick;
Dongen, Stijn van;
Enright, Anton J;
Freeman, Tom C

Publication type:

Article

Structural intermediates of a DNA–ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7147, doi. 10.1093/nar/gkz596

By:

Williamson, Adele;
Leiros, Hanna-Kirsti S

Publication type:

Article

An E2F7-dependent transcriptional program modulates DNA damage repair and genomic stability.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7716, doi. 10.1093/nar/gkz587

By:

Mitxelena, Jone;
Apraiz, Aintzane;
Vallejo-Rodríguez, Jon;
García-Santisteban, Iraia;
Fullaondo, Asier;
Alvarez-Fernández, Mónica;
Malumbres, Marcos;
Zubiaga, Ana M

Publication type:

Article

Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7182, doi. 10.1093/nar/gkz586

By:

Schvartzman, Jorge B;
Hernández, Pablo;
Krimer, Dora B;
Dorier, Julien;
Stasiak, Andrzej

Publication type:

Article

A map of direct TF–DNA interactions in the human genome.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7715, doi. 10.1093/nar/gkz582

By:

Gheorghe, Marius;
Sandve, Geir Kjetil;
Khan, Aziz;
Chèneby, Jeanne;
Ballester, Benoit;
Mathelier, Anthony

Publication type:

Article

The effect of adenine protonation on RNA phosphodiester backbone bond cleavage elucidated by deaza-nucleobase modifications and mass spectrometry.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7223, doi. 10.1093/nar/gkz574

By:

Fuchs, Elisabeth;
Falschlunger, Christoph;
Micura, Ronald;
Breuker, Kathrin

Publication type:

Article

Stability of an RNA•DNA–DNA triple helix depends on base triplet composition and length of the RNA third strand.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7213, doi. 10.1093/nar/gkz573

By:

Kunkler, Charlotte N;
Hulewicz, Jacob P;
Hickman, Sarah C;
Wang, Matthew C;
McCown, Phillip J;
Brown, Jessica A

Publication type:

Article

Toxin–antitoxin operon kacAT of Klebsiella pneumoniae is regulated by conditional cooperativity via a W-shaped KacA–KacT complex.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7690, doi. 10.1093/nar/gkz563

By:

Qian, Hongliang;
Yu, Hao;
Li, Peifei;
Zhu, E;
Yao, Qingqing;
Tai, Cui;
Deng, Zixin;
Gerdes, Kenn;
He, Xinyi;
Gan, Jianhua;
Ou, Hong-Yu

Publication type:

Article

Single-molecule analysis of i-motif within self-assembled DNA duplexes and nanocircles.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7199, doi. 10.1093/nar/gkz565

By:

Megalathan, Anoja;
Cox, Bobby D;
Wilkerson, Peter D;
Kaur, Anisa;
Sapkota, Kumar;
Reiner, Joseph E;
Dhakal, Soma

Publication type:

Article

Mapping of scaffold/matrix attachment regions in human genome: a data mining exercise.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7247, doi. 10.1093/nar/gkz562

By:

Narwade, Nitin;
Patel, Sonal;
Alam, Aftab;
Chattopadhyay, Samit;
Mittal, Smriti;
Kulkarni, Abhijeet

Publication type:

Article

Noise-reducing optogenetic negative-feedback gene circuits in human cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7703, doi. 10.1093/nar/gkz556

By:

Guinn, Michael Tyler;
Balázsi, Gábor

Publication type:

Article

Transcriptome signature of cellular senescence.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7294, doi. 10.1093/nar/gkz555

By:

Casella, Gabriel;
Munk, Rachel;
Kim, Kyoung Mi;
Piao, Yulan;
De, Supriyo;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article

Mechanism for APOBEC3G catalytic exclusion of RNA and non-substrate DNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7676, doi. 10.1093/nar/gkz550

By:

Solomon, William C;
Myint, Wazo;
Hou, Shurong;
Kanai, Tapan;
Tripathi, Rashmi;
Kurt Yilmaz, Nese;
Schiffer, Celia A;
Matsuo, Hiroshi

Publication type:

Article

CRISPR repeat sequences and relative spacing specify DNA integration by Pyrococcus furiosus Cas1 and Cas2.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7518, doi. 10.1093/nar/gkz548

By:

Grainy, Julie;
Garrett, Sandra;
Graveley, Brenton R;
P. Terns, Michael

Publication type:

Article

Quantitative proteomics revealed C6orf203/MTRES1 as a factor preventing stress-induced transcription deficiency in human mitochondria.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7502, doi. 10.1093/nar/gkz542

By:

Kotrys, Anna V;
Cysewski, Dominik;
Czarnomska, Sylwia D;
Pietras, Zbigniew;
Borowski, Lukasz S;
Dziembowski, Andrzej;
Szczesny, Roman J

Publication type:

Article

Direct quantification of the translocation activities of Saccharomyces cerevisiae Pif1 helicase.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7494, doi. 10.1093/nar/gkz541

By:

Lu, Chen;
Le, Shimin;
Chen, Jin;
Byrd, Alicia K;
Rhodes, Daniela;
Raney, Kevin D;
Yan, Jie

Publication type:

Article

Structure and ligand binding of the glutamine-II riboswitch.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7666, doi. 10.1093/nar/gkz539

By:

Huang, Lin;
Wang, Jia;
Watkins, Andrew M;
Das, Rhiju;
Lilley, David M J

Publication type:

Article

TRAF6 mediates human DNA2 polyubiquitination and nuclear localization to maintain nuclear genome integrity.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7564, doi. 10.1093/nar/gkz537

By:

Meng, Yuan;
Liu, Changwei;
Shen, Lei;
Zhou, Mian;
Liu, Wenpeng;
Kowolik, Claudia;
Campbell, Judith L;
Zheng, Li;
Shen, Binghui

Publication type:

Article

Boundaries of eliminated heterochromatin of Tetrahymena are positioned by the DNA-binding protein Ltl1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7348, doi. 10.1093/nar/gkz504

By:

Jaspan, Vita N;
Taye, Marta E;
Carle, Christine M;
Chung, Joyce J;
Chalker, Douglas L

Publication type:

Article

DNA damage tolerance in stem cells, ageing, mutagenesis, disease and cancer therapy.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7163, doi. 10.1093/nar/gkz531

By:

Pilzecker, Bas;
Buoninfante, Olimpia Alessandra;
Jacobs, Heinz

Publication type:

Article

The DEAH-box RNA helicase Dhr1 contains a remarkable carboxyl terminal domain essential for small ribosomal subunit biogenesis.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7548, doi. 10.1093/nar/gkz529

By:

Roychowdhury, Amlan;
Joret, Clément;
Bourgeois, Gabrielle;
Heurgué-Hamard, Valérie;
Lafontaine, Denis L J;
Graille, Marc

Publication type:

Article

Metal sensing and regulation of adaptive responses to manganese limitation by MtsR is critical for group A streptococcus virulence.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7476, doi. 10.1093/nar/gkz524

By:

Do, Hackwon;
Makthal, Nishanth;
Chandrangsu, Pete;
Olsen, Randall J;
Helmann, John D;
Musser, James M;
Kumaraswami, Muthiah

Publication type:

Article

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7235, doi. 10.1093/nar/gkz538

By:

Liu, Dianbo;
Davila-Velderrain, Jose;
Zhang, Zhizhuo;
Kellis, Manolis

Publication type:

Article

DNMT3B shapes the mCA landscape and regulates mCG for promoter bivalency in human embryonic stem cells.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7460, doi. 10.1093/nar/gkz520

By:

Tan, Hong Kee;
Wu, Chan-Shuo;
Li, Jia;
Tan, Zi Hui;
Hoffman, Jordan R;
Fry, Christopher J;
Yang, Henry;
Di Ruscio, Annalisa;
Tenen, Daniel G

Publication type:

Article

Two factor authentication: Asf1 mediates crosstalk between H3 K14 and K56 acetylation.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7380, doi. 10.1093/nar/gkz508

By:

Cote, Joy M;
Kuo, Yin-Ming;
Henry, Ryan A;
Scherman, Hataichanok;
Krzizike, Daniel D;
Andrews, Andrew J

Publication type:

Article

Characterization of the pleiotropic LysR-type transcription regulator LeuO of Escherichia coli.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7363, doi. 10.1093/nar/gkz506

By:

Fragel, Susann M;
Montada, Anna;
Heermann, Ralf;
Baumann, Ulrich;
Schacherl, Magdalena;
Schnetz, Karin

Publication type:

Article

Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7648, doi. 10.1093/nar/gkz505

By:

Liu, Xiaodan;
Shen, Shengqi;
Wu, Pengzhi;
Li, Fudong;
Liu, Xing;
Wang, Chongyuan;
Gong, Qingguo;
Wu, Jihui;
Yao, Xuebiao;
Zhang, Huafeng;
Shi, Yunyu

Publication type:

Article

A CRISPR/Cas9 screen identifies the histone demethylase MINA53 as a novel HIV-1 latency-promoting gene (LPG).

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7333, doi. 10.1093/nar/gkz493

By:

Huang, Huachao;
Kong, Weili;
Jean, Maxime;
Fiches, Guillaume;
Zhou, Dawei;
Hayashi, Tsuyoshi;
Que, Jianwen;
Santoso, Netty;
Zhu, Jian

Publication type:

Article

A Fanci knockout mouse model reveals common and distinct functions for FANCI and FANCD2.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7532, doi. 10.1093/nar/gkz514

By:

Dubois, Emilie L;
Guitton-Sert, Laure;
Béliveau, Mariline;
Parmar, Kalindi;
Chagraoui, Jalila;
Vignard, Julien;
Pauty, Joris;
Caron, Marie-Christine;
Coulombe, Yan;
Buisson, Rémi;
Jacquet, Karine;
Gamblin, Clémence;
Gao, Yuandi;
Laprise, Patrick;
Lebel, Michel;
Sauvageau, Guy;
D. d'Andrea, Alan;
Masson, Jean-Yves

Publication type:

Article

Highly efficient silencing of microRNA by heteroduplex oligonucleotides.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7321, doi. 10.1093/nar/gkz492

By:

Yoshioka, Kotaro;
Kunieda, Taiki;
Asami, Yutaro;
Guo, Huijia;
Miyata, Haruka;
Yoshida-Tanaka, Kie;
Sujino, Yumiko;
Piao, Wenying;
Kuwahara, Hiroya;
Nishina, Kazutaka;
Hara, Rintaro Iwata;
Nagata, Tetsuya;
Wada, Takeshi;
Obika, Satoshi;
Yokota, Takanori

Publication type:

Article

Identification of LARK as a novel and conserved G-quadruplex binding protein in invertebrates and vertebrates.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7306, doi. 10.1093/nar/gkz484

By:

Niu, Kangkang;
Xiang, Lijun;
Jin, Ying;
Peng, Yuling;
Wu, Feng;
Tang, Wenhuan;
Zhang, Xiaojuan;
Deng, Huimin;
Xiang, Hui;
Li, Sheng;
Wang, Jian;
Song, Qisheng;
Feng, Qili

Publication type:

Article

Pseudouridines on Trypanosoma brucei spliceosomal small nuclear RNAs and their implication for RNA and protein interactions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7633, doi. 10.1093/nar/gkz477

By:

Rajan, K Shanmugha;
Doniger, Tirza;
Cohen-Chalamish, Smadar;
Chen, Dana;
Semo, Oz;
Aryal, Saurav;
Glick Saar, Efrat;
Chikne, Vaibhav;
Gerber, Doron;
Unger, Ron;
Tschudi, Christian;
Michaeli, Shulamit

Publication type:

Article

Understanding mitochondrial DNA maintenance disorders at the single muscle fibre level.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7430, doi. 10.1093/nar/gkz472

By:

Lehmann, Diana;
Tuppen, Helen A L;
Campbell, Georgia E;
Alston, Charlotte L;
Lawless, Conor;
Rosa, Hannah S;
Rocha, Mariana C;
Reeve, Amy K;
Nicholls, Thomas J;
Deschauer, Marcus;
Zierz, Stephan;
Taylor, Robert W;
Turnbull, Doug M;
Vincent, Amy E

Publication type:

Article

A Drosophila cell-free system that senses DNA breaks and triggers phosphorylation signalling.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7444, doi. 10.1093/nar/gkz473

By:

Harpprecht, Lisa;
Baldi, Sandro;
Schauer, Tamas;
Schmidt, Andreas;
Bange, Tanja;
Robles, Maria S;
Kremmer, Elisabeth;
Imhof, Axel;
Becker, Peter B

Publication type:

Article

Rescue of spinal muscular atrophy mouse models with AAV9-Exon-specific U1 snRNA.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7618, doi. 10.1093/nar/gkz469

By:

Donadon, Irving;
Bussani, Erica;
Riccardi, Federico;
Licastro, Danilo;
Romano, Giulia;
Pianigiani, Giulia;
Pinotti, Mirko;
Konstantinova, Pavlina;
Evers, Melvin;
Lin, Shuo;
Rüegg, Markus A;
Pagani, Franco

Publication type:

Article

A group II intron-encoded protein interacts with the cellular replicative machinery through the β-sliding clamp.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7605, doi. 10.1093/nar/gkz468

By:

García-Rodríguez, Fernando M;
Neira, José L;
Marcia, Marco;
Molina-Sánchez, María D;
Toro, Nicolás

Publication type:

Article

Maintenance of translational elongation rate underlies the survival of Escherichia coli during oxidative stress.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7592, doi. 10.1093/nar/gkz467

By:

Zhu, Manlu;
Dai, Xiongfeng

Publication type:

Article

Restriction of AID activity and somatic hypermutation by PARP-1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7418, doi. 10.1093/nar/gkz466

By:

Tepper, Sandra;
Mortusewicz, Oliver;
Członka, Ewelina;
Bello, Amanda;
Schmidt, Angelika;
Jeschke, Julia;
Fischbach, Arthur;
Pfeil, Ines;
Petersen-Mahrt, Svend K;
Mangerich, Aswin;
Helleday, Thomas;
Leonhardt, Heinrich;
Jungnickel, Berit

Publication type:

Article

hnRNPC regulates cancer-specific alternative cleavage and polyadenylation profiles.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7580, doi. 10.1093/nar/gkz461

By:

Fischl, Harry;
Neve, Jonathan;
Wang, Zhiqiao;
Patel, Radhika;
Louey, Alastair;
Tian, Bin;
Furger, Andre

Publication type:

Article

Microhomologies are prevalent at Cas9-induced larger deletions.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7402, doi. 10.1093/nar/gkz459

By:

Owens, Dominic D G;
Caulder, Adam;
Frontera, Vincent;
Harman, Joe R;
Allan, Alasdair J;
Bucakci, Akin;
Greder, Lucas;
Codner, Gemma F;
Hublitz, Philip;
McHugh, Peter J;
Teboul, Lydia;
de Bruijn, Marella F T R

Publication type:

Article

Histone H4 H75E mutation attenuates global genomic and Rad26-independent transcription-coupled nucleotide excision repair.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. 7392, doi. 10.1093/nar/gkz453

By:

Selvam, Kathiresan;
Rahman, Sheikh Arafatur;
Li, Shisheng

Publication type:

Article

CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. e84, doi. 10.1093/nar/gkz425

By:

A. Hardigan, Andrew;
Roberts, Brian S;
Moore, Dianna E;
Ramaker, Ryne C;
Jones, Angela L;
Myers, Richard M

Publication type:

Article

FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. e83, doi. 10.1093/nar/gkz418

By:

Quan, Jenai;
Langelier, Charles;
Kuchta, Alison;
Batson, Joshua;
Teyssier, Noam;
Lyden, Amy;
Caldera, Saharai;
McGeever, Aaron;
Dimitrov, Boris;
King, Ryan;
Wilheim, Jordan;
Murphy, Maxwell;
Ares, Lara Pesce;
Travisano, Katherine A;
Sit, Rene;
Amato, Roberto;
Mumbengegwi, Davis R;
Smith, Jennifer L;
Bennett, Adam;
Gosling, Roly

Publication type:

Article

Regulostat Inferelator: a novel network biology platform to uncover molecular devices that predetermine cellular response phenotypes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. e82, doi. 10.1093/nar/gkz417

By:

Ung, Choong Yong;
Ghanat Bari, Mehrab;
Zhang, Cheng;
Liang, Jingjing;
Correia, Cristina;
Li, Hu

Publication type:

Article

MethylCal: Bayesian calibration of methylation levels.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. e81, doi. 10.1093/nar/gkz325

By:

Ochoa, Eguzkine;
Zuber, Verena;
Fernandez-Jimenez, Nora;
Bilbao, Jose Ramon;
Clark, Graeme R;
Maher, Eamonn R;
Bottolo, Leonardo

Publication type:

Article

MOSClip: multi-omic and survival pathway analysis for the identification of survival associated gene and modules.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. e80, doi. 10.1093/nar/gkz324

By:

Martini, Paolo;
Chiogna, Monica;
Calura, Enrica;
Romualdi, Chiara

Publication type:

Article

TAGOOS: genome-wide supervised learning of non-coding loci associated to complex phenotypes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 14, p. e79, doi. 10.1093/nar/gkz320

By:

González, Aitor;
Artufel, Marie;
Rihet, Pascal

Publication type:

Article