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Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7276, doi. 10.1093/nar/gkz610
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The effect of adenine protonation on RNA phosphodiester backbone bond cleavage elucidated by deaza-nucleobase modifications and mass spectrometry.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7223, doi. 10.1093/nar/gkz574
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Structural intermediates of a DNA–ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7147, doi. 10.1093/nar/gkz596
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An E2F7-dependent transcriptional program modulates DNA damage repair and genomic stability.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7716, doi. 10.1093/nar/gkz587
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Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7182, doi. 10.1093/nar/gkz586
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A map of direct TF–DNA interactions in the human genome.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7715, doi. 10.1093/nar/gkz582
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Visualization and analysis of RNA-Seq assembly graphs.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7262, doi. 10.1093/nar/gkz599
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Stability of an RNA•DNA–DNA triple helix depends on base triplet composition and length of the RNA third strand.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7213, doi. 10.1093/nar/gkz573
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Single-molecule analysis of i-motif within self-assembled DNA duplexes and nanocircles.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7199, doi. 10.1093/nar/gkz565
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Toxin–antitoxin operon kacAT of Klebsiella pneumoniae is regulated by conditional cooperativity via a W-shaped KacA–KacT complex.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7690, doi. 10.1093/nar/gkz563
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Mapping of scaffold/matrix attachment regions in human genome: a data mining exercise.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7247, doi. 10.1093/nar/gkz562
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Noise-reducing optogenetic negative-feedback gene circuits in human cells.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7703, doi. 10.1093/nar/gkz556
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Transcriptome signature of cellular senescence.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7294, doi. 10.1093/nar/gkz555
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Mechanism for APOBEC3G catalytic exclusion of RNA and non-substrate DNA.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7676, doi. 10.1093/nar/gkz550
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CRISPR repeat sequences and relative spacing specify DNA integration by Pyrococcus furiosus Cas1 and Cas2.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7518, doi. 10.1093/nar/gkz548
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Quantitative proteomics revealed C6orf203/MTRES1 as a factor preventing stress-induced transcription deficiency in human mitochondria.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7502, doi. 10.1093/nar/gkz542
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Direct quantification of the translocation activities of Saccharomyces cerevisiae Pif1 helicase.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7494, doi. 10.1093/nar/gkz541
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Structure and ligand binding of the glutamine-II riboswitch.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7666, doi. 10.1093/nar/gkz539
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Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7235, doi. 10.1093/nar/gkz538
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TRAF6 mediates human DNA2 polyubiquitination and nuclear localization to maintain nuclear genome integrity.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7564, doi. 10.1093/nar/gkz537
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DNA damage tolerance in stem cells, ageing, mutagenesis, disease and cancer therapy.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7163, doi. 10.1093/nar/gkz531
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The DEAH-box RNA helicase Dhr1 contains a remarkable carboxyl terminal domain essential for small ribosomal subunit biogenesis.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7548, doi. 10.1093/nar/gkz529
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Metal sensing and regulation of adaptive responses to manganese limitation by MtsR is critical for group A streptococcus virulence.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7476, doi. 10.1093/nar/gkz524
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DNMT3B shapes the mCA landscape and regulates mCG for promoter bivalency in human embryonic stem cells.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7460, doi. 10.1093/nar/gkz520
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A Fanci knockout mouse model reveals common and distinct functions for FANCI and FANCD2.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7532, doi. 10.1093/nar/gkz514
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Two factor authentication: Asf1 mediates crosstalk between H3 K14 and K56 acetylation.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7380, doi. 10.1093/nar/gkz508
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Characterization of the pleiotropic LysR-type transcription regulator LeuO of Escherichia coli.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7363, doi. 10.1093/nar/gkz506
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Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7648, doi. 10.1093/nar/gkz505
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Boundaries of eliminated heterochromatin of Tetrahymena are positioned by the DNA-binding protein Ltl1.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7348, doi. 10.1093/nar/gkz504
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A CRISPR/Cas9 screen identifies the histone demethylase MINA53 as a novel HIV-1 latency-promoting gene (LPG).
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7333, doi. 10.1093/nar/gkz493
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Highly efficient silencing of microRNA by heteroduplex oligonucleotides.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7321, doi. 10.1093/nar/gkz492
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Identification of LARK as a novel and conserved G-quadruplex binding protein in invertebrates and vertebrates.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7306, doi. 10.1093/nar/gkz484
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Pseudouridines on Trypanosoma brucei spliceosomal small nuclear RNAs and their implication for RNA and protein interactions.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7633, doi. 10.1093/nar/gkz477
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A Drosophila cell-free system that senses DNA breaks and triggers phosphorylation signalling.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7444, doi. 10.1093/nar/gkz473
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Understanding mitochondrial DNA maintenance disorders at the single muscle fibre level.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7430, doi. 10.1093/nar/gkz472
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Rescue of spinal muscular atrophy mouse models with AAV9-Exon-specific U1 snRNA.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7618, doi. 10.1093/nar/gkz469
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A group II intron-encoded protein interacts with the cellular replicative machinery through the β-sliding clamp.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7605, doi. 10.1093/nar/gkz468
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Maintenance of translational elongation rate underlies the survival of Escherichia coli during oxidative stress.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7592, doi. 10.1093/nar/gkz467
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Restriction of AID activity and somatic hypermutation by PARP-1.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7418, doi. 10.1093/nar/gkz466
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hnRNPC regulates cancer-specific alternative cleavage and polyadenylation profiles.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7580, doi. 10.1093/nar/gkz461
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Microhomologies are prevalent at Cas9-induced larger deletions.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7402, doi. 10.1093/nar/gkz459
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Histone H4 H75E mutation attenuates global genomic and Rad26-independent transcription-coupled nucleotide excision repair.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7392, doi. 10.1093/nar/gkz453
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CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. e84, doi. 10.1093/nar/gkz425
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FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. e83, doi. 10.1093/nar/gkz418
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Regulostat Inferelator: a novel network biology platform to uncover molecular devices that predetermine cellular response phenotypes.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. e82, doi. 10.1093/nar/gkz417
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MethylCal: Bayesian calibration of methylation levels.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. e81, doi. 10.1093/nar/gkz325
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MOSClip: multi-omic and survival pathway analysis for the identification of survival associated gene and modules.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. e80, doi. 10.1093/nar/gkz324
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TAGOOS: genome-wide supervised learning of non-coding loci associated to complex phenotypes.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. e79, doi. 10.1093/nar/gkz320
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